Clone Sequence Records
BO01464.3prime Sequence
925 bp (796 high quality bases) assembled on 2005-11-30
> BO01464.3prime
ATGGTCTAGAAAGCTTGCTTTTACCTCTTTCGTCCTTTTGTGTGACTTTT
CGTGGCTGTTTTTGTGGTGCAGCTGGGAGAAGGACTTCTGGCAGTACTGG
CAGCTAAATGGTCGTTCACCGGTATGGGTTTTCAGATGAACCCGGAGGAC
GTTGGAGTAGCCAAAGGACCTGCTGCAGAACTCGCATTTGTACGGTCGTT
CGTTGGTGTGGATCCTCTGATGCTTAATGCGAGTGGAGGGATCGGCGAAC
CTGGAGTCGCAATAGTCACATTTGTAGGGACGATTACCGGTGTGGGTGTT
CATGTGCCTCGCCAACTGCGGAGTCTGGCGAAAACGTTTGTGACAGATTT
CGCATTCGTGTGGTTTCTTCGCGCTGTGGACTTTCATGTGGTTGGTCAAC
TTTACGCGCTCTGAGTAGACATTGTTGCAAATGTTGCAGGTAAAGGAAGC
AGCCTGTCCGGAGTCCTCGTCTTCAAAAGTTACCGGTTTGGGACTAAGTG
AATAGACAGATTCCTCTGGAGCGGAGATGGCAGGCTCTATGCTGACCAAT
TCATCGGCACTACAGGCCACATCCTCGCTGCTCTCCAGCGTTACATCGTA
TGAGTCTAGGTACTCGTACTCCAACTCGCTGTCGCTACCGGTAGCCTCAT
TCTTGGACAGGTCTCTTGATTCAGTTTTCTTCTTCGTCTCCTGCTCATCG
TGAACAATCTCTATGTTTATCTCCTGCAGCTTCTGCTCCTTCAGATCCTT
CTCCGTCTGCTGGCAAAGGGATCTGAGTTTGAGGGCAGCTCTGAGCAGCA
GGGCGCAGCTGGTGCAGATGCGATTGGGCCAGTCGGGACTCTCACTCAAT
TTCACTCCTGTGCAGCGTTTGATTTTATCTGGAAAATCGGGCTCCGTGGG
CATGAGAGACTCATCCTTAAGCTGC
BO01464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-PA | 960 | CG4854-RA | 51..953 | 925..23 | 4440 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 1220 | CG4854-RA | 148..1054 | 925..19 | 4475 | 99.6 | Minus |
CG4936-RA | 1824 | CG4936-RA | 1311..1457 | 328..182 | 225 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20028339..20028838 | 849..350 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 20029198..20029395 | 216..19 | 975 | 99.5 | Minus |
3R | 32079331 | 3R | 20028904..20029039 | 349..214 | 680 | 100 | Minus |
3R | 32079331 | 3R | 20028205..20028276 | 925..854 | 345 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:02:35 has no hits.
BO01464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:55 Download gff for
BO01464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 51..960 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:08 Download gff for
BO01464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 51..960 | 16..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:50:13 Download gff for
BO01464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 150..1056 | 19..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:12:09 Download gff for
BO01464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 148..1054 | 19..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:12:09 Download gff for
BO01464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20028205..20028284 | 845..925 | 93 | -> | Minus |
3R | 20028344..20028838 | 350..844 | 100 | -> | Minus |
3R | 20028904..20029038 | 215..349 | 100 | -> | Minus |
3R | 20029200..20029395 | 19..214 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:50:13 Download gff for
BO01464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15854922..15855117 | 19..214 | 99 | | Minus |
arm_3R | 15853927..15854006 | 845..925 | 93 | -> | Minus |
arm_3R | 15854066..15854560 | 350..844 | 100 | -> | Minus |
arm_3R | 15854626..15854760 | 215..349 | 100 | -> | Minus |
BO01464.5prime Sequence
799 bp (772 high quality bases) assembled on 2005-11-30
> BO01464.5prime
GAAGTTATCAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGT
GTCGCATCTGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAG
CCCGATTTTCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGA
GAGTCCCGACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCA
GAGCTGCCCTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTG
AAGGAGCAGAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCA
GGAGACGAAGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTA
CCGGTAGCGACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTA
ACGCTGGAGAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAG
CATAGAGCCTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTC
CCAAACCGGTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTT
ACCTGCAACATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAA
CCACATGAAAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTC
ACAAACGTTTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCAC
ACCGGTAATCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGA
TCCCTCCACTCGCATTAAGCATCAGAGGATCCACACCAACGAACGACCG
BO01464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-PA | 960 | CG4854-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 1220 | CG4854-RA | 98..880 | 17..799 | 3915 | 100 | Plus |
CG4936-RA | 1824 | CG4936-RA | 1311..1445 | 664..798 | 210 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20028339..20028838 | 143..642 | 2500 | 100 | Plus |
3R | 32079331 | 3R | 20028904..20029039 | 643..778 | 680 | 100 | Plus |
3R | 32079331 | 3R | 20028155..20028280 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:22:03 has no hits.
BO01464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:57 Download gff for
BO01464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:10 Download gff for
BO01464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:28 Download gff for
BO01464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 90..882 | 6..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:04:14 Download gff for
BO01464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 88..880 | 6..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:04:14 Download gff for
BO01464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20028145..20028280 | 6..142 | 97 | -> | Plus |
3R | 20028339..20028838 | 143..642 | 100 | -> | Plus |
3R | 20028904..20029038 | 643..777 | 100 | -> | Plus |
3R | 20029200..20029221 | 778..799 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:28 Download gff for
BO01464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15853867..15854002 | 6..142 | 97 | -> | Plus |
arm_3R | 15854061..15854560 | 143..642 | 100 | -> | Plus |
arm_3R | 15854626..15854760 | 643..777 | 100 | -> | Plus |
arm_3R | 15854922..15854943 | 778..799 | 100 | | Plus |
BO01464.complete Sequence
991 bp (991 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629508
> BO01464.complete
GAAGTTATCAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGT
GTCGCATCTGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAG
CCCGATTTTCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGA
GAGTCCCGACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCA
GAGCTGCCCTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTG
AAGGAGCAGAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCA
GGAGACGAAGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTA
CCGGTAGCGACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTA
ACGCTGGAGAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAG
CATAGAGCCTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTC
CCAAACCGGTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTT
ACCTGCAACATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAA
CCACATGAAAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTC
ACAAACGTTTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCAC
ACCGGTAATCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGA
TCCCTCCACTCGCATTAAGCATCAGAGGATCCACACCAACGAACGACCGT
ACAAATGCGAGTTCTGCAGCAGGTCCTTTGGCTACTCCAACGTCCTCCGG
GTTCATCTGAAAACCCATACCGGTGAACGACCATTTAGCTGCCAGTACTG
CCAGAAGTCCTTCTCCCAGCTGCACCACAAAAACAGCCACGAAAAGTCAC
ACAAAAGGACGAAAGAGGTAAAAGCAAGCTTTCTAGACCAT
BO01464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 960 | CG4854-PA | 1..957 | 17..973 | 4770 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 1220 | CG4854-RA | 98..1054 | 17..973 | 4770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20028339..20028838 | 143..642 | 2500 | 100 | Plus |
3R | 32079331 | 3R | 20029198..20029395 | 776..973 | 975 | 99.5 | Plus |
3R | 32079331 | 3R | 20028904..20029039 | 643..778 | 680 | 100 | Plus |
3R | 32079331 | 3R | 20028155..20028280 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:23:26 has no hits.
BO01464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:12 Download gff for
BO01464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 1..960 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:17:00 Download gff for
BO01464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 90..1056 | 6..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:10 Download gff for
BO01464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 100..1052 | 17..969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:12 Download gff for
BO01464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 90..1056 | 6..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:28 Download gff for
BO01464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 98..1050 | 17..969 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:28 Download gff for
BO01464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20028155..20028280 | 17..142 | 100 | -> | Plus |
3R | 20028339..20028838 | 143..642 | 100 | -> | Plus |
3R | 20028904..20029038 | 643..777 | 100 | -> | Plus |
3R | 20029200..20029391 | 778..969 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:10 Download gff for
BO01464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15853877..15854002 | 17..142 | 100 | -> | Plus |
arm_3R | 15854061..15854560 | 143..642 | 100 | -> | Plus |
arm_3R | 15854626..15854760 | 643..777 | 100 | -> | Plus |
arm_3R | 15854922..15855113 | 778..969 | 100 | | Plus |
BO01464.pep Sequence
Translation from 16 to 991
> BO01464.pep
MHTNVDSRDLKCRICLVQPKDESLMPTEPDFPDKIKRCTGVELSESPDWP
NRICTSCALLLRAALKLRSLCQQTEKDLKEQKLQEINIEIVHDEQETKKK
TESRDLSKNEATGSDSELEYEYLDSYDVTLESSEDVACSADELVSIEPAI
SAPEESVYSLSPKPVTFEDEDSGQAASFTCNICNNVYSERVKLTNHMKVH
SAKKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRI
KHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFS
QLHHKNSHEKSHKRTKEVKASFLDH
BO01464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-PA | 319 | CG4854-PA | 1..319 | 1..319 | 1720 | 100 | Plus |
trem-PA | 439 | CG4413-PA | 173..408 | 93..314 | 471 | 41.2 | Plus |
CG4424-PA | 345 | CG4424-PA | 11..326 | 12..317 | 460 | 32.7 | Plus |
CG4936-PA | 521 | CG4936-PA | 360..496 | 178..314 | 460 | 56.2 | Plus |
CG14711-PA | 377 | CG14711-PA | 7..365 | 12..315 | 455 | 30.9 | Plus |
trem-PA | 439 | CG4413-PA | 1..354 | 1..316 | 218 | 21.1 | Plus |