Clone Sequence Records
BO01466.3prime Sequence
861 bp (754 high quality bases) assembled on 2005-11-30
> BO01466.3prime
ATGGTCTAGAAAGCTTGCCCTTTCTGGTGGCTTGATCGATAGGCATCTGG
CCGTGGTGCAGTCCCTGTAGAGGATGTCGAAGTCCTTGCAGCAGAGCAAC
TTGCAGCGATTGACGCCCGGCTGGATGGCGCCCAAGCCGCGTAATATGCG
CACCTGTTCCACATTGCAGACGAGCGGTACGATGTCAAGGCGCTTTAGTT
TGGTATAAACCGTATGCAGACCGCCGACCAAGTGCTTCAGGAAGAGCTCG
AAGGCCTGCGGCAGGCAGAGCATCGTTTCGTTGCTAATTATGAATGCGGC
GACCTTCTGACCCCGGTACTCCACCAGCTTGCACTCATTGGCACTGGGAT
CCGAGGTGGAGATCGGCGGCGGTGAGTTGTACGACCTTGGAGGCACATGG
TGATGGGCGGCGGCCATCAGTTCCAAGGGGGAGGCATGGTGCATCATCTG
CAGGGAGTTGAGGAGCCCCAGCGAATGGGGCGGCAGTCCATGGGGCATTC
TGGGCGGTAGGCCCGTCGGCAGTCCGTTGCCCGATGGCATTCCATGTGGC
GGGGGGCTGAGCTGATGGTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTG
TTGCTGCTGTTGCTGCATCTGCTGCATCATGGAGTGGTTGAGGGAGCTCA
CCGGACTGACGGCACTGGGATGGCGACTTGGTGAACTGGCCGGTGAGCAA
CTGGATCCTCGTCCTGTGTGCGAGCTCCGTCCATTTGGACGATCCTCGTT
GGCTCCACGCGAACTGTTGCTACCGTCGCGTCCATTGTGCTGCTGCTGTT
GCTGCTGGGCTGCTGCGGCTGCCGCTGCTGCGGCTGCCTGCTGCTGCTGC
TGGTGATGCAT
BO01466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4952-PE | 3246 | dac-RE | 121..962 | 861..20 | 4185 | 99.8 | Minus |
| CG4952-PD | 3225 | dac-RD | 121..962 | 861..20 | 4185 | 99.8 | Minus |
| CG4952-PB | 3246 | dac-RB | 121..962 | 861..20 | 4185 | 99.8 | Minus |
| CG4952-PF | 3219 | dac-RF | 121..962 | 861..20 | 4185 | 99.8 | Minus |
| CG4952-PG | 3192 | dac-RG | 121..936 | 861..46 | 4055 | 99.8 | Minus |
| CG4952-PA | 3219 | dac-RA | 121..935 | 861..47 | 4050 | 99.8 | Minus |
| CG4952-PC | 3198 | dac-RC | 121..935 | 861..47 | 4050 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dac-RF | 4955 | CG4952-RF | 748..1589 | 861..20 | 4195 | 99.9 | Minus |
| dac-RB | 4982 | CG4952-RB | 748..1589 | 861..20 | 4195 | 99.9 | Minus |
| dac-RD | 4961 | CG4952-RD | 748..1589 | 861..20 | 4195 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16483808..16484622 | 47..861 | 4060 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:24:43 has no hits.
BO01466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:30:59 Download gff for
BO01466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4952-PF | 121..962 | 20..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:15 Download gff for
BO01466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4952-PD | 121..968 | 14..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:35:22 Download gff for
BO01466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RD | 748..1595 | 14..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:35:26 Download gff for
BO01466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RD | 748..1595 | 14..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:35:26 Download gff for
BO01466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16481520..16481551 | 15..46 | 93 | <- | Plus |
| 2L | 16483808..16484622 | 47..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:35:22 Download gff for
BO01466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16481520..16481551 | 15..46 | 93 | <- | Plus |
| arm_2L | 16483808..16484622 | 47..861 | 99 | | Plus |
BO01466.5prime Sequence
840 bp (737 high quality bases) assembled on 2005-11-30
> BO01466.5prime
GAAGTTATCAGTCGACATGGATTCTGTGACAAGTGAACAGAGTGAAAATA
ACAACAATAAAGCGGGCGCAATAAATAACAATATTAATAGTGGTATTGAA
AGAGCCGCGGGCAATATGAACACCACCGCCATGTTGATGCATCACCAGCA
GCAGCAGCAGGCAGCCGCAGCAGCGGCAGCCGCAGCAGCCCAGCAGCAAC
AGCAGCAGCACAATGGACGCGACGGTAGCAACAGTTCGCGTGGAGCCAAC
GAGGATCGTCCAAATGGACGGAGCTCGCACACAGGACGAGGATCCAGTTG
CTCACCGGCCAGTTCACCAAGTCGCCATCCCAGTGCCGTCAGTCCGGTGA
GCTCCCTCAACCACTCCATGATGCAGCAGATGCAGCAACAGCAGCAACAA
CAGCAGCAGCAACAGCAGCAGCAGCAACACCATCAGCTCAGCCCCCCGCC
ACATGGAATGCCATCGGGCAACGGACTGCCGACGGGCCTACCGCCCAGAA
TGCCCCATGGACTGCCGCCCCATTCGCTGGGGCTCCTCAACTCCCTGCAG
ATGATGCACCATGCCTCCCCCTTGGAACTGATGGCCGCCGCCCATCACCA
TGTGCCTCCAAGGTCGTACAACTCACCGCCGCCGATCTCCACCTCGGATC
CCAGTGCCAATGAGTGCAAGCTGGTGGAGTACCGGGGTCAGAAGGTCGCC
GCATTCATAATTAGCAACGAAACGATGCTCTGCCTGCCGCAGGCCTTCGA
GCTCTTCCTGAAGCACTTGGTCGGCGGTCTGCATACGGTTTATACCAAAC
TAAAGCGCCTTGACATCGTACCGCTCGTCTGCAATGTGGA
BO01466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4952-PE | 3246 | dac-RE | 1..824 | 17..840 | 4095 | 99.8 | Plus |
| CG4952-PD | 3225 | dac-RD | 1..824 | 17..840 | 4095 | 99.8 | Plus |
| CG4952-PA | 3219 | dac-RA | 1..824 | 17..840 | 4095 | 99.8 | Plus |
| CG4952-PB | 3246 | dac-RB | 1..824 | 17..840 | 4095 | 99.8 | Plus |
| CG4952-PF | 3219 | dac-RF | 1..824 | 17..840 | 4095 | 99.8 | Plus |
| CG4952-PG | 3192 | dac-RG | 1..824 | 17..840 | 4095 | 99.8 | Plus |
| CG4952-PC | 3198 | dac-RC | 1..824 | 17..840 | 4095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dac-RC | 4934 | CG4952-RC | 628..1451 | 17..840 | 4105 | 99.9 | Plus |
| dac-RG | 4928 | CG4952-RG | 628..1451 | 17..840 | 4105 | 99.9 | Plus |
| dac-RF | 4955 | CG4952-RF | 628..1451 | 17..840 | 4105 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16483919..16484742 | 840..17 | 4105 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:54:59 has no hits.
BO01466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:00 Download gff for
BO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4952-PA | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:16 Download gff for
BO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4952-PC | 1..823 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:10 Download gff for
BO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RF | 625..1450 | 10..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:57 Download gff for
BO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RF | 625..1450 | 10..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:57 Download gff for
BO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16483920..16484745 | 10..839 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:10 Download gff for
BO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16483920..16484745 | 10..839 | 99 | | Minus |
BO01466.complete Sequence
997 bp (997 high quality bases) assembled on 2005-06-23
> BO01466.complete
GAAGTTATCAGTCGACATGGATTCTGTGACAAGTGAACAGAGTGAAAATA
ACAACAATAAAGCGGGCGCAATAAATAACAATATTAATAGTGGTATTGAA
AGAGCCGCGGGCAATATGAACACCACCGCCATGTTGATGCATCACCAGCA
GCAGCAGCAGGCAGCCGCAGCAGCGGCAGCCGCAGCAGCCCAGCAGCAAC
AGCAGCAGCACAATGGACGCGACGGTAGCAACAGTTCGCGTGGAGCCAAC
GAGGATCGTCCAAATGGACGGAGCTCGCACACAGGACGAGGATCCAGTTG
CTCACCGGCCAGTTCACCAAGTCGCCATCCCAGTGCCGTCAGTCCGGTGA
GCTCCCTCAACCACTCCATGATGCAGCAGATGCAGCAACAGCAGCAACAA
CAGCAGCAGCAACAGCAGCAGCAGCAACACCATCAGCTCAGCCCCCCGCC
ACATGGAATGCCATCGGGCAACGGACTGCCGACGGGCCTACCGCCCAGAA
TGCCCCATGGACTGCCGCCCCATTCGCTGGGGCTCCTCAACTCCCTGCAG
ATGATGCACCATGCCTCCCCCTTGGAACTGATGGCCGCCGCCCATCACCA
TGTGCCTCCAAGGTCGTACAACTCACCGCCGCCGATCTCCACCTCGGATC
CCAGTGCCAATGAGTGCAAGCTGGTGGAGTACCGGGGTCAGAAGGTCGCC
GCATTCATAATTAGCAACGAAACGATGCTCTGCCTGCCGCAGGCCTTCGA
GCTCTTCCTGAAGCACTTGGTCGGCGGTCTGCATACGGTTTATACCAAAC
TAAAGCGCCTTGACATCGTACCGCTCGTCTGCAATGTGGAACAGGTGCGC
ATATTACGCGGCTTGGGCGCCATCCAGCCGGGCGTCAATCGCTGCAAGTT
GCTCTGCTGCAAGGACTTCGACATCCTCTACAGGGACTGCACCACGGCCA
GATGCCTATCGATCAAGCCACCAGAAAGGGCAAGCTTTCTAGACCAT
BO01466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dac-RF | 3219 | CG4952-PF | 1..962 | 17..978 | 4795 | 99.9 | Plus |
| dac-RB | 3246 | CG4952-PB | 1..962 | 17..978 | 4795 | 99.9 | Plus |
| dac-RD | 3225 | CG4952-PD | 1..962 | 17..978 | 4795 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dac-RF | 4955 | CG4952-RF | 628..1589 | 17..978 | 4795 | 99.9 | Plus |
| dac-RB | 4982 | CG4952-RB | 628..1589 | 17..978 | 4795 | 99.9 | Plus |
| dac-RD | 4961 | CG4952-RD | 628..1589 | 17..978 | 4795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16483808..16484742 | 951..17 | 4660 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:24:14 has no hits.
BO01466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:54 Download gff for
BO01466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RB | 1..967 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:36 Download gff for
BO01466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RB | 611..1580 | 10..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:34 Download gff for
BO01466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RD | 628..1592 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:54 Download gff for
BO01466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RB | 611..1580 | 10..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:50 Download gff for
BO01466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dac-RD | 628..1592 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:50 Download gff for
BO01466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16481522..16481551 | 952..981 | 93 | <- | Minus |
| 2L | 16483808..16484742 | 17..951 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:34 Download gff for
BO01466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16481522..16481551 | 952..981 | 93 | <- | Minus |
| arm_2L | 16483808..16484742 | 17..951 | 99 | | Minus |
BO01466.pep Sequence
Translation from 16 to 997
> BO01466.pep
MDSVTSEQSENNNNKAGAINNNINSGIERAAGNMNTTAMLMHHQQQQQAA
AAAAAAAAQQQQQQHNGRDGSNSSRGANEDRPNGRSSHTGRGSSCSPASS
PSRHPSAVSPVSSLNHSMMQQMQQQQQQQQQQQQQQQHHQLSPPPHGMPS
GNGLPTGLPPRMPHGLPPHSLGLLNSLQMMHHASPLELMAAAHHHVPPRS
YNSPPPISTSDPSANECKLVEYRGQKVAAFIISNETMLCLPQAFELFLKH
LVGGLHTVYTKLKRLDIVPLVCNVEQVRILRGLGAIQPGVNRCKLLCCKD
FDILYRDCTTARCLSIKPPERASFLDH
BO01466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dac-PF | 1072 | CG4952-PF | 1..321 | 1..321 | 1700 | 100 | Plus |
| dac-PB | 1081 | CG4952-PB | 1..323 | 1..323 | 1696 | 99.4 | Plus |
| dac-PD | 1074 | CG4952-PD | 1..320 | 1..320 | 1695 | 100 | Plus |
| dac-PC | 1065 | CG4952-PC | 1..321 | 1..321 | 1658 | 97.8 | Plus |
| dac-PG | 1063 | CG4952-PG | 1..319 | 1..321 | 1654 | 98.1 | Plus |
