Clone Sequence Records
BO01468.3prime Sequence
844 bp (778 high quality bases) assembled on 2005-11-30
> BO01468.3prime
ATGGTCTAGAAAGCTTGCTGAGCGCGGATTATCCCGATCCTGACTGGCTG
GCCTGTAATCCAGCAGTGCCACCTGTGCGGGCAGCTGAACTCCATGAATT
TTCTTTAAGTGAGCCCTCAGATTGCTACTGGTACTAAAGTTGTTGGAGCA
GACAACGCACTGGTGATGCGGATGCTTCTGCCGAATATGCTCATTGAGAT
CGCGAACCTTGGCGAAGGCGGTGGTGCAGTACTTGCAGACGTGCGAATTG
CGCACGTGGGTTTTCAGATATTGAGGCGAGGCATAAGCCAGTGGGCAGTA
CTGGCACTTGTAGATGGCCTGGCTGCCACTGGGCTCCACGTCCAGCAGGC
GATTGGCCTCGTTGTACTCGTCCAGGTTGTAGTGTTTCAGTTCGACGGCA
GCATAGTCCACGGTGCGCATCTCGTATGCTGGGGATTCCAGTTGCTCCAG
CTGAGAGTCGGATAGATCCAGTCGTGGTTGGGCTGTGGTGGCAGGTAAAA
ACTCGGAGACAATCAGCGAATCTTGGTTGGCCAGCCTTTGAGAGGGTTTC
GTACAGCTATCCGTCCTTCTCCTCGTTTGTCTTGTTTCTGTAGGACGATC
GGGGTCTAAAACCACATAATCCAGTGGTATCCTCCTGAATTCCTCCAGTA
TCTCGAATTCATCACTAGCCTGGTTTTCGGGCTCTTCCTCCGTTGCGTCC
ATCTTAACTTGGCACATTTCTACCTCCGCCTCGTTGTAGAGCTGCAGTAG
CTGCTGATTGGCGAACGTTAGCTTCCTGAAGAAGGCGTACTGCTGCAGGC
AATCTTCCAAGCAATCATTACAGATCATGGGCAGCTCCTCAGTA
BO01468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-PA | 972 | CG13123-RA | 144..969 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RC | 1087 | CG13123-RC | 238..1063 | 844..19 | 4130 | 100 | Minus |
CG13123-RB | 996 | CG13123-RB | 147..972 | 844..19 | 4130 | 100 | Minus |
CG13123-RA | 1094 | CG13123-RA | 245..1070 | 844..19 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9791985..9792810 | 19..844 | 4130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:50:29 has no hits.
BO01468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:03 Download gff for
BO01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 145..972 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:20 Download gff for
BO01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 145..972 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:20 Download gff for
BO01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 246..1073 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:57:32 Download gff for
BO01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 246..1073 | 15..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:57:32 Download gff for
BO01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9791982..9792809 | 15..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:20 Download gff for
BO01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9791982..9792809 | 15..843 | 99 | | Plus |
BO01468.5prime Sequence
869 bp (737 high quality bases) assembled on 2005-11-30
> BO01468.5prime
GAAGTTATCAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCG
TGGACAGCGCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCG
GATCAGACAGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGC
ACTTAATCTTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAG
ATTGCCTGCAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAG
CAGCTACTGCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAA
GATGGACGCAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCG
AGATACTGGAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGAC
CCCGATCGTCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTG
TACGAAACCCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCG
AGTTTTTACCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCT
CAGCTGGAGCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTA
TGCTGCCGTCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCA
ATCGCCTGCTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGC
CAGTACTGCCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGT
GCGCAATTCGCACGTCTGCAAGTACTGCACCACCGCCTTCGCCAAGGTTC
GCGATCTCAATGAGCATATTCGGCAGAAGCATCCGCATCACCAGTGCGTT
GTCTGCTCCNACAACTTTA
BO01468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-PA | 972 | CG13123-RA | 1..853 | 17..869 | 4246 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 18:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RA | 1094 | CG13123-RA | 101..954 | 16..869 | 4259 | 99.9 | Plus |
CG13123-RC | 1087 | CG13123-RC | 101..947 | 16..869 | 4144 | 99.1 | Plus |
CG13123-RB | 996 | CG13123-RB | 45..856 | 58..869 | 4049 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 18:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9792101..9792828 | 869..142 | 3629 | 99.9 | Minus |
2L | 23513712 | 2L | 9792881..9793007 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 18:54:24 has no hits.
BO01468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:04 Download gff for
BO01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:22 Download gff for
BO01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:12:15 Download gff for
BO01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 101..953 | 16..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:27:25 Download gff for
BO01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 101..953 | 16..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:27:25 Download gff for
BO01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9792102..9792827 | 143..868 | 99 | <- | Minus |
2L | 9792881..9793007 | 16..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:12:15 Download gff for
BO01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9792102..9792827 | 143..868 | 99 | <- | Minus |
arm_2L | 9792881..9793007 | 16..142 | 100 | | Minus |
BO01468.complete Sequence
1003 bp (1003 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629509
> BO01468.complete
GAAGTTATCAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCG
TGGACAGCGCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCG
GATCAGACAGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGC
ACTTAATCTTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAG
ATTGCCTGCAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAG
CAGCTACTGCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAA
GATGGACGCAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCG
AGATACTGGAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGAC
CCCGATCGTCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTG
TACGAAACCCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCG
AGTTTTTACCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCT
CAGCTGGAGCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTA
TGCTGCCGTCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCA
ATCGCCTGCTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGC
CAGTACTGCCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGT
GCGCAATTCGCACGTCTGCAAGTACTGCACCACCGCCTTCGCCAAGGTTC
GCGATCTCAATGAGCATATTCGGCAGAAGCATCCGCATCACCAGTGCGTT
GTCTGCTCCAACAACTTTAGTACCAGTAGCAATCTGAGGGCTCACTTAAA
GAAAATTCATGGAGTTCAGCTGCCCGCACAGGTGGCACTGCTGGATTACA
GGCCAGCCAGTCAGGATCGGGATAATCCGCGCTCAGCAAGCTTTCTAGAC
CAT
BO01468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RA | 972 | CG13123-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
CG13123-RC | 813 | CG13123-PC | 1..810 | 176..985 | 4050 | 100 | Plus |
CG13123-RB | 813 | CG13123-PB | 1..810 | 176..985 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RA | 1094 | CG13123-RA | 101..1070 | 16..985 | 4850 | 100 | Plus |
CG13123-RC | 1087 | CG13123-RC | 101..1063 | 16..985 | 4710 | 99.3 | Plus |
CG13123-RB | 996 | CG13123-RB | 45..972 | 58..985 | 4640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9791985..9792828 | 985..142 | 4220 | 100 | Minus |
2L | 23513712 | 2L | 9792881..9793007 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:52:15 has no hits.
BO01468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:55 Download gff for
BO01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 1..972 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:37 Download gff for
BO01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 91..1063 | 16..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:53 Download gff for
BO01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 102..1070 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:55 Download gff for
BO01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 91..1063 | 16..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:24 Download gff for
BO01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 102..1070 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:24 Download gff for
BO01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9791983..9792827 | 143..987 | 99 | <- | Minus |
2L | 9792881..9793006 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:53 Download gff for
BO01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9791983..9792827 | 143..987 | 99 | <- | Minus |
arm_2L | 9792881..9793006 | 17..142 | 100 | | Minus |
BO01468.pep Sequence
Translation from 16 to 1003
> BO01468.pep
MDLRKLCRICFVDSASVDIREHRSGGSSDQTVLQLIEAMFGWNIALNLTE
ELPMICNDCLEDCLQQYAFFRKLTFANQQLLQLYNEAEVEMCQVKMDATE
EEPENQASDEFEILEEFRRIPLDYVVLDPDRPTETRQTRRRTDSCTKPSQ
RLANQDSLIVSEFLPATTAQPRLDLSDSQLEQLESPAYEMRTVDYAAVEL
KHYNLDEYNEANRLLDVEPSGSQAIYKCQYCPLAYASPQYLKTHVRNSHV
CKYCTTAFAKVRDLNEHIRQKHPHHQCVVCSNNFSTSSNLRAHLKKIHGV
QLPAQVALLDYRPASQDRDNPRSASFLDH
BO01468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-PA | 323 | CG13123-PA | 1..323 | 1..323 | 1703 | 100 | Plus |
CG13123-PC | 270 | CG13123-PC | 1..270 | 54..323 | 1430 | 100 | Plus |
CG13123-PB | 270 | CG13123-PB | 1..270 | 54..323 | 1430 | 100 | Plus |