Clone Sequence Records
BO01470.3prime Sequence
862 bp (744 high quality bases) assembled on 2005-11-30
> BO01470.3prime
ATGGTCTAGAAAGCTTGCATTGAATAACTCGCTTTCGTTTTCGTCCTCTG
CAAATATGGCAGTCATCTTGCCGGTGTTCGAAAATTGTGAATTCTCCAGG
TATCCTGCGCTGTCGAGGGCGTCAACTCCTTTCAGCCATTGGAGCTCCTC
GTCCTGGGACTCGTCTATTGCGCTTCTCTGGCTTCGATTCTTCGCAGCAA
GGGCCGGACTAAACTGCGGTTTTTGGCGGACAATCGGATCGTTGTGGTGG
CCACTGGCCAAGCCATGGCGTATCAACTGATTGCGCCGCATATAATCTGC
TCCGCAGACGGAGCATATATAGGCCTTACAGATACTATGGACGAAGAGAT
GAACATCCCTGTTTTCGGGCCGTCCGAAGAGCTTTCCACAGATCGGACAG
CCGTAGCTCTTCGCGGAGCCATGGGACGCCAAGTGCTTTCTATAATTTAC
AGGATGGCTGAAGCGGGCACTGCAGGTGTCGCAAACGAGGTTCCGCTCAT
TCTGGTGGACCGTCTTCACATGCTGATCACACTCCCGCCTCTGCTGGAAA
CGCTTCTTGCAGCCCGGTTCTGGACAGGAGTGCAGGTACACCTTCCGATG
AACGTTCTTCAGGTGACACTCCCTATTGCTGCGCTGCACAAAGCGCGCCG
GACACTCGGGACACGGATAGTTCCGCACGTCGTTGTGGGCATTCATGTGA
TCCACAAGGGCGTTGTGCTTTTGGAAGACCCTTCCACACGCGTCGCAGGC
ATGCTCCGACGCGGGCGTTTGCTGTCCACCCTGGTATCGGTGTGTGGGCC
GATGGGGCGCCAACTCCTCCCTGGTGAGGAATAGCGCTGGACAGCGTCTG
CAGACGAAGGAC
BO01470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11398-PA | 990 | CG11398-RA | 144..987 | 862..19 | 4170 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11398-RD | 3018 | CG11398-RD | 222..1065 | 862..19 | 4190 | 99.8 | Minus |
CG11398-RA | 1487 | CG11398-RA | 222..1065 | 862..19 | 4190 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1213942..1214785 | 19..862 | 4190 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:04:40 has no hits.
BO01470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:06 Download gff for
BO01470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-PA | 144..990 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:26 Download gff for
BO01470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-PA | 144..990 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:24 Download gff for
BO01470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 222..1069 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:20 Download gff for
BO01470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 222..1069 | 15..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:20 Download gff for
BO01470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1213938..1214785 | 15..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:24 Download gff for
BO01470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1107971..1108818 | 15..862 | 99 | | Plus |
BO01470.5prime Sequence
865 bp (827 high quality bases) assembled on 2005-11-30
> BO01470.5prime
GAAGTTATCAGTCGACATGACTGAAGTACAATATAAAGAGGCCGAGATCT
TGGCTCTACTACCACATACATATGAGGATGAGGAGCTGTCCTTAAACACA
GAAGAGCTACAGTTCGAGGAACTCAATGAGAGAAGCCAGCACCAGCAAGG
CGGATCTCCGTCCTTCGTCTGCAGACGCTGTCCAGCGCTATTCCTCACCA
GGGAGGAGTTGGCCGCCCATCGGCCCACACACCGATACCAGGGTGGACAG
CAAACGCCCGCGTCGGAGCATGCCTGCGACGCGTGTGGAAGGGTCTTCCA
AAAGCACAACGCCCTTGTGGATCACATGAATGCCCACAACGACGTGCGGA
ACTATCCGTGTCCCGAGTGTCCGGCGCGCTTTGTGCAGCGCAGCAATAGG
GAGTGTCACCTGAAGAACGTTCATCGGAAGGTGTACCTGCACTCCTGTCC
AGAACCGGGCTGCAAGAAGCGTTTCCAGCAGAGGCGGGAGTGTGATCAGC
ATGTGAAGACGGTCCACCAGAATGAGCGGAACCTCGTTTGCGACACCTGC
AGTGCCCGCTTCAGCCATCCTGTAAATTATAGAAAGCACTTGGCGTCCCA
TGGCTCCGCGAAGAGCTACGGCTGTCCGATCTGTGGAAAGCTCTTCGGAC
GGCCCGAAAACAGGGATGTTCATCTCTTCGTCCATAGTATCTGTAAGGCC
TATATATGCTCCGTCTGCGGAGCAGATTATATGCGGCGCAATCAGTTGAT
ACGCCATGGCTTGGCCAGTGGCCACCACAACGATCCGATTGTCCGCCAAA
AACCGCAGTTTAGTCCGGCCCCTTGCTGCGAAGAATCGAAGCCAGAGAAG
CGCAATAGACGAGTC
BO01470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11398-PA | 990 | CG11398-RA | 1..805 | 17..821 | 4025 | 100 | Plus |
CG11398-PA | 990 | CG11398-RA | 803..848 | 820..865 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11398-RD | 3018 | CG11398-RD | 79..926 | 17..865 | 4220 | 99.9 | Plus |
CG11398-RA | 1487 | CG11398-RA | 79..926 | 17..865 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1214081..1214793 | 865..152 | 3520 | 99.9 | Minus |
X | 23542271 | X | 1214942..1215078 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:42:06 has no hits.
BO01470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:07 Download gff for
BO01470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-PA | 1..848 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:28 Download gff for
BO01470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-PA | 1..848 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:08 Download gff for
BO01470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 73..926 | 8..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:14 Download gff for
BO01470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 73..926 | 8..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:14 Download gff for
BO01470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1214943..1215084 | 8..152 | 97 | | Minus |
X | 1214081..1214792 | 153..865 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:08 Download gff for
BO01470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1108114..1108825 | 153..865 | 99 | <- | Minus |
arm_X | 1108976..1109117 | 8..152 | 97 | | Minus |
BO01470.complete Sequence
1021 bp (1021 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629510
> BO01470.complete
GAAGTTATCAGTCGACATGACTGAAGTACAATATAAAGAGGCCGAGATCT
TGGCTCTACTACCACATACATATGAGGATGAGGAGCTGTCCTTAAACACA
GAAGAGCTACAGTTCGAGGAACTCAATGAGAGAAGCCAGCACCAGCAAGG
CGGATCTCCGTCCTTCGTCTGCAGACGCTGTCCAGCGCTATTCCTCACCA
GGGAGGAGTTGGCCGCCCATCGGCCCACACACCGATACCAGGGTGGACAG
CAAACGCCCGCGTCGGAGCATGCCTGCGACGCGTGTGGAAGGGTCTTCCA
AAAGCACAACGCCCTTGTGGATCACATGAATGCCCACAACGACGTGCGGA
ACTATCCGTGTCCCGAGTGTCCGGCGCGCTTTGTGCAGCGCAGCAATAGG
GAGTGTCACCTGAAGAACGTTCATCGGAAGGTGTACCTGCACTCCTGTCC
AGAACCGGGCTGCAAGAAGCGTTTCCAGCAGAGGCGGGAGTGTGATCAGC
ATGTGAAGACGGTCCACCAGAATGAGCGGAACCTCGTTTGCGACACCTGC
AGTGCCCGCTTCAGCCATCCTGTAAATTATAGAAAGCACTTGGCGTCCCA
TGGCTCCGCGAAGAGCTACGGCTGTCCGATCTGTGGAAAGCTCTTCGGAC
GGCCCGAAAACAGGGATGTTCATCTCTTCGTCCATAGTATCTGTAAGGCC
TATATATGCTCCGTCTGCGGAGCAGATTATATGCGGCGCAATCAGTTGAT
ACGCCATGGCTTGGCCAGTGGCCACCACAACGATCCGATTGTCCGCCAAA
AACCGCAGTTTAGTCCGGCCCTTGCTGCGAAGAATCGAAGCCAGAGAAGC
GCAATAGACGAGTCCCAGGACGAGGAGCTCCAATGGCTGAAAGGAGTTGA
CGCCCTCGACAGCGCAGGATACCTGGAGAATTCACAATTTTCGAACACCG
GCAAGATGACTGCCATATTTGCAGAGGACGAAAACGAAAGCGAGTTATTC
AATGCAAGCTTTCTAGACCAT
BO01470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11398-RD | 990 | CG11398-PD | 1..987 | 17..1003 | 4935 | 100 | Plus |
CG11398-RA | 990 | CG11398-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11398-RD | 3018 | CG11398-RD | 79..1065 | 17..1003 | 4935 | 100 | Plus |
CG11398-RA | 1487 | CG11398-RA | 79..1065 | 17..1003 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1213942..1214793 | 1003..152 | 4260 | 100 | Minus |
X | 23542271 | X | 1214942..1215078 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:13 has no hits.
BO01470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:56 Download gff for
BO01470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 1..990 | 17..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:39 Download gff for
BO01470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 48..1044 | 8..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:40 Download gff for
BO01470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 79..1065 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:56 Download gff for
BO01470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 48..1044 | 8..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:20 Download gff for
BO01470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11398-RA | 79..1065 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:20 Download gff for
BO01470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1213939..1214792 | 153..1005 | 99 | <- | Minus |
X | 1214943..1215078 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:40 Download gff for
BO01470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1107972..1108825 | 153..1005 | 99 | <- | Minus |
arm_X | 1108976..1109111 | 17..152 | 100 | | Minus |
BO01470.pep Sequence
Translation from 16 to 1021
> BO01470.pep
MTEVQYKEAEILALLPHTYEDEELSLNTEELQFEELNERSQHQQGGSPSF
VCRRCPALFLTREELAAHRPTHRYQGGQQTPASEHACDACGRVFQKHNAL
VDHMNAHNDVRNYPCPECPARFVQRSNRECHLKNVHRKVYLHSCPEPGCK
KRFQQRRECDQHVKTVHQNERNLVCDTCSARFSHPVNYRKHLASHGSAKS
YGCPICGKLFGRPENRDVHLFVHSICKAYICSVCGADYMRRNQLIRHGLA
SGHHNDPIVRQKPQFSPALAAKNRSQRSAIDESQDEELQWLKGVDALDSA
GYLENSQFSNTGKMTAIFAEDENESELFNASFLDH
BO01470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11398-PD | 329 | CG11398-PD | 1..329 | 1..329 | 1798 | 100 | Plus |
CG11398-PA | 329 | CG11398-PA | 1..329 | 1..329 | 1798 | 100 | Plus |
Meics-PB | 571 | CG8474-PB | 223..418 | 45..247 | 274 | 28.6 | Plus |
Meics-PA | 583 | CG8474-PA | 235..430 | 45..247 | 274 | 28.6 | Plus |
CG15269-PA | 587 | CG15269-PA | 297..485 | 49..247 | 269 | 29.9 | Plus |
Meics-PB | 571 | CG8474-PB | 284..483 | 46..256 | 265 | 28.9 | Plus |
Meics-PA | 583 | CG8474-PA | 296..495 | 46..256 | 265 | 28.9 | Plus |
Meics-PB | 571 | CG8474-PB | 340..563 | 46..247 | 186 | 23.3 | Plus |
Meics-PA | 583 | CG8474-PA | 352..575 | 46..247 | 186 | 23.3 | Plus |
Meics-PB | 571 | CG8474-PB | 410..571 | 33..199 | 156 | 30.1 | Plus |
Meics-PA | 583 | CG8474-PA | 422..583 | 33..199 | 156 | 30.1 | Plus |