Clone Sequence Records
BO01474.3prime Sequence
819 bp (813 high quality bases) assembled on 2005-11-30
> BO01474.3prime
ATGGTCTAGAAAGCTTGCTTTAAACTTATTTCTTTTTGTTTCTTGGCTGC
TCGTCCGTCGCTTCCCTCGCGTGTGTGCTGACATGTGTTTTTGTAGGCCG
TTTAGTTGCTTGAAGCTTTGCTGACATTTGGAACATTTGAACGGCTGTTC
GCCAGTATGAGTCCGGGTGTGGACTTGCAGTTGCCCAACTTGCCGGAAGC
GCTTGGGGCAGTTCGGACAACCGAAGGGACGCTCGCCGGTGTGACAACGT
GTGTGGCTCTGCAGGTTGCCCTTCTGGGCAAAGGATCGCGGACATAGGGA
GCACTTGTAGGGTCGCTCGCCAGTATGTATGCGCATGTGAATCTCTAGGT
TTTGTTTTTGGGTGAACGACTGTGTGCAGAGCTTGCACCGATATGGTCCG
GGAACCCTTTTCGGTTTGCCCCGTTTTGAGGCGTTCCAGATTTTATCATC
ATCTTCGTGTTCAAGCTCACTATCCGGGCTCCATGAGTCATTGTCCGAGT
AGGATCTCGCCCTCCTCTTGGACTTATTGTGTGGCGTCTTTGCTGGAGAA
TAACTTTGCGCGAGCTTATGCTCATTGTTGTCTGGAAGAGGAGAAGATAT
TGGCTTCGGCTCTGGAGGCATGTACTTAACCTGCACAAGCTCAACTAANA
GAGGTTCGGATGTCTCCGGCGTTTTACCAGCTTCCATTACCGAGACCGGC
ATCTGTGGTTCTATGTTATCCCCTATATTCAGGCAATACTCTATATCGTC
CAGCTCCTTCATCATCAGACGCAGCTGTTCAAAGTACTGATGGCTCTTTC
GGCATTGCCGTCTTAGCCG
BO01474.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-PA | 1020 | CG17359-RA | 217..1017 | 819..19 | 3986 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1352 | CG17359-RA | 286..1086 | 819..19 | 3994 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13998166..13998966 | 19..819 | 3994 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:13:15 has no hits.
BO01474.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:14 Download gff for
BO01474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-PA | 217..1020 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:38 Download gff for
BO01474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-PA | 217..1020 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:30 Download gff for
BO01474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 286..1091 | 11..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:42 Download gff for
BO01474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 286..1091 | 11..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:42 Download gff for
BO01474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13998161..13998966 | 11..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:30 Download gff for
BO01474.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13991261..13992066 | 11..819 | 99 | | Plus |
BO01474.5prime Sequence
742 bp (741 high quality bases) assembled on 2005-11-30
> BO01474.5prime
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAAAAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCC
BO01474.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-PA | 1020 | CG17359-RA | 1..726 | 17..742 | 3630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1352 | CG17359-RA | 70..795 | 17..742 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13998457..13999182 | 742..17 | 3630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:03:50 has no hits.
BO01474.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:15 Download gff for
BO01474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:39 Download gff for
BO01474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-PA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:50:24 Download gff for
BO01474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 61..795 | 8..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:44 Download gff for
BO01474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 61..795 | 8..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:44 Download gff for
BO01474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13998457..13999191 | 8..742 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:50:24 Download gff for
BO01474.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13991557..13992291 | 8..742 | 99 | | Minus |
BO01474.complete Sequence
1051 bp (1051 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629512
> BO01474.complete
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAAAAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCCTACAAGTG
CTCCCTATGTCCGCGATCCTTTGCCCAGAAGGGCAACCTGCAGAGCCACA
CACGTTGTCACACCGGCGAGCGTCCCTTCGGTTGTCCGAACTGCCCCAAG
CGCTTCCGGCAAGTTGGGCAACTGCAAGTCCACACCCGGACTCATACTGG
CGAACAGCCGTTCAAATGTTCCAAATGTCAGCAAAGCTTCAAGCAACTAA
ACGGCCTACAAAAACACATGTCAGCACACACGCGAGGGAAGCGACGGACG
AGCAGCCAAGAAACAAAAAGAAATAAGTTTAAAGCAAGCTTTCTAGACCA
T
BO01474.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1020 | CG17359-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-RA | 1352 | CG17359-RA | 70..1086 | 17..1033 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13998166..13999182 | 1033..17 | 5085 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:59:13 has no hits.
BO01474.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:59 Download gff for
BO01474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 1..1020 | 17..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:42 Download gff for
BO01474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 56..1086 | 8..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:52 Download gff for
BO01474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 70..1086 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:59 Download gff for
BO01474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 56..1086 | 8..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:53 Download gff for
BO01474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17359-RA | 70..1086 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:53 Download gff for
BO01474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13998164..13999182 | 17..1035 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:52 Download gff for
BO01474.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13991264..13992282 | 17..1035 | 99 | | Minus |
BO01474.pep Sequence
Translation from 16 to 1051
> BO01474.pep
MDISQMCRVCRDESDCLLDIYTEPYASSNRVQEQEPVLATMLRECSGCSV
HKEDGMPQFICVECAEAVRNAYRLRRQCRKSHQYFEQLRLMMKELDDIEY
CLNIGDNIEPQMPVSVMEAGKTPETSEPLLVELVQVKYMPPEPKPISSPL
PDNNEHKLAQSYSPAKTPHNKSKRRARSYSDNDSWSPDSELEHEDDDKIW
NASKRGKPKRVPGPYRCKLCTQSFTQKQNLEIHMRIHTGERPYKCSLCPR
SFAQKGNLQSHTRCHTGERPFGCPNCPKRFRQVGQLQVHTRTHTGEQPFK
CSKCQQSFKQLNGLQKHMSAHTRGKRRTSSQETKRNKFKASFLDH
BO01474.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17359-PA | 339 | CG17359-PA | 1..339 | 1..339 | 1853 | 100 | Plus |
CG44002-PA | 345 | CG44002-PA | 5..320 | 7..335 | 379 | 26.9 | Plus |
Meics-PB | 571 | CG8474-PB | 21..413 | 7..341 | 355 | 24.5 | Plus |
Meics-PA | 583 | CG8474-PA | 21..425 | 7..341 | 347 | 24.5 | Plus |
gl-PB | 557 | CG7672-PB | 392..547 | 167..325 | 320 | 37.1 | Plus |
Meics-PB | 571 | CG8474-PB | 343..474 | 214..345 | 296 | 39.4 | Plus |
Meics-PA | 583 | CG8474-PA | 355..486 | 214..345 | 296 | 39.4 | Plus |
Meics-PB | 571 | CG8474-PB | 371..484 | 214..327 | 279 | 40.4 | Plus |
Meics-PA | 583 | CG8474-PA | 383..496 | 214..327 | 279 | 40.4 | Plus |
Meics-PB | 571 | CG8474-PB | 316..423 | 215..322 | 268 | 42.6 | Plus |
Meics-PA | 583 | CG8474-PA | 328..435 | 215..322 | 268 | 42.6 | Plus |
Meics-PB | 571 | CG8474-PB | 427..571 | 214..325 | 176 | 28.1 | Plus |
Meics-PA | 583 | CG8474-PA | 439..583 | 214..325 | 176 | 28.1 | Plus |