Clone BO01474 Report

Search the DGRC for BO01474

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:14
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG17359-RA
Protein status:BO01474.pep: full length peptide match
Sequenced Size:1051

Clone Sequence Records

BO01474.3prime Sequence

819 bp (813 high quality bases) assembled on 2005-11-30

> BO01474.3prime
ATGGTCTAGAAAGCTTGCTTTAAACTTATTTCTTTTTGTTTCTTGGCTGC
TCGTCCGTCGCTTCCCTCGCGTGTGTGCTGACATGTGTTTTTGTAGGCCG
TTTAGTTGCTTGAAGCTTTGCTGACATTTGGAACATTTGAACGGCTGTTC
GCCAGTATGAGTCCGGGTGTGGACTTGCAGTTGCCCAACTTGCCGGAAGC
GCTTGGGGCAGTTCGGACAACCGAAGGGACGCTCGCCGGTGTGACAACGT
GTGTGGCTCTGCAGGTTGCCCTTCTGGGCAAAGGATCGCGGACATAGGGA
GCACTTGTAGGGTCGCTCGCCAGTATGTATGCGCATGTGAATCTCTAGGT
TTTGTTTTTGGGTGAACGACTGTGTGCAGAGCTTGCACCGATATGGTCCG
GGAACCCTTTTCGGTTTGCCCCGTTTTGAGGCGTTCCAGATTTTATCATC
ATCTTCGTGTTCAAGCTCACTATCCGGGCTCCATGAGTCATTGTCCGAGT
AGGATCTCGCCCTCCTCTTGGACTTATTGTGTGGCGTCTTTGCTGGAGAA
TAACTTTGCGCGAGCTTATGCTCATTGTTGTCTGGAAGAGGAGAAGATAT
TGGCTTCGGCTCTGGAGGCATGTACTTAACCTGCACAAGCTCAACTAANA
GAGGTTCGGATGTCTCCGGCGTTTTACCAGCTTCCATTACCGAGACCGGC
ATCTGTGGTTCTATGTTATCCCCTATATTCAGGCAATACTCTATATCGTC
CAGCTCCTTCATCATCAGACGCAGCTGTTCAAAGTACTGATGGCTCTTTC
GGCATTGCCGTCTTAGCCG

BO01474.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-PA 1020 CG17359-RA 217..1017 819..19 3986 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1352 CG17359-RA 286..1086 819..19 3994 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13998166..13998966 19..819 3994 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 01:13:15 has no hits.

BO01474.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:14 Download gff for BO01474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-PA 217..1020 18..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:38 Download gff for BO01474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-PA 217..1020 18..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:30 Download gff for BO01474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 286..1091 11..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:42 Download gff for BO01474.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 286..1091 11..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:42 Download gff for BO01474.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13998161..13998966 11..819 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:30 Download gff for BO01474.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13991261..13992066 11..819 99   Plus

BO01474.5prime Sequence

742 bp (741 high quality bases) assembled on 2005-11-30

> BO01474.5prime
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAAAAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCC

BO01474.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-PA 1020 CG17359-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1352 CG17359-RA 70..795 17..742 3630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13998457..13999182 742..17 3630 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:03:50 has no hits.

BO01474.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:15 Download gff for BO01474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:39 Download gff for BO01474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:50:24 Download gff for BO01474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 61..795 8..742 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:44 Download gff for BO01474.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 61..795 8..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:44 Download gff for BO01474.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13998457..13999191 8..742 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:50:24 Download gff for BO01474.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13991557..13992291 8..742 99   Minus

BO01474.complete Sequence

1051 bp (1051 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629512

> BO01474.complete
GAAGTTATCAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGG
ACGAATCCGACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCC
AATCGGGTCCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATG
CAGCGGATGCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCG
TGGAGTGTGCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGC
CGAAAGAGCCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCT
GGACGATATAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGA
TGCCGGTCTCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCT
CTTTTAGTTGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCC
AATATCTTCTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTT
ATTCTCCAGCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCC
TACTCGGACAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGA
TGATGATAAAATCTGGAACGCCTCAAAACGGGGCAAACCGAAAAGGGTTC
CCGGACCATATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAA
AACCTAGAGATTCACATGCGCATACATACTGGCGAGCGACCCTACAAGTG
CTCCCTATGTCCGCGATCCTTTGCCCAGAAGGGCAACCTGCAGAGCCACA
CACGTTGTCACACCGGCGAGCGTCCCTTCGGTTGTCCGAACTGCCCCAAG
CGCTTCCGGCAAGTTGGGCAACTGCAAGTCCACACCCGGACTCATACTGG
CGAACAGCCGTTCAAATGTTCCAAATGTCAGCAAAGCTTCAAGCAACTAA
ACGGCCTACAAAAACACATGTCAGCACACACGCGAGGGAAGCGACGGACG
AGCAGCCAAGAAACAAAAAGAAATAAGTTTAAAGCAAGCTTTCTAGACCA
T

BO01474.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1020 CG17359-PA 1..1017 17..1033 5085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-RA 1352 CG17359-RA 70..1086 17..1033 5085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13998166..13999182 1033..17 5085 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:59:13 has no hits.

BO01474.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:59 Download gff for BO01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 1..1020 17..1034 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:42 Download gff for BO01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 56..1086 8..1041 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:52 Download gff for BO01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 70..1086 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:59 Download gff for BO01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 56..1086 8..1041 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:53 Download gff for BO01474.complete
Subject Subject Range Query Range Percent Splice Strand
CG17359-RA 70..1086 17..1035 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:53 Download gff for BO01474.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13998164..13999182 17..1035 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:52 Download gff for BO01474.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13991264..13992282 17..1035 99   Minus

BO01474.pep Sequence

Translation from 16 to 1051

> BO01474.pep
MDISQMCRVCRDESDCLLDIYTEPYASSNRVQEQEPVLATMLRECSGCSV
HKEDGMPQFICVECAEAVRNAYRLRRQCRKSHQYFEQLRLMMKELDDIEY
CLNIGDNIEPQMPVSVMEAGKTPETSEPLLVELVQVKYMPPEPKPISSPL
PDNNEHKLAQSYSPAKTPHNKSKRRARSYSDNDSWSPDSELEHEDDDKIW
NASKRGKPKRVPGPYRCKLCTQSFTQKQNLEIHMRIHTGERPYKCSLCPR
SFAQKGNLQSHTRCHTGERPFGCPNCPKRFRQVGQLQVHTRTHTGEQPFK
CSKCQQSFKQLNGLQKHMSAHTRGKRRTSSQETKRNKFKASFLDH

BO01474.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17359-PA 339 CG17359-PA 1..339 1..339 1853 100 Plus
CG44002-PA 345 CG44002-PA 5..320 7..335 379 26.9 Plus
Meics-PB 571 CG8474-PB 21..413 7..341 355 24.5 Plus
Meics-PA 583 CG8474-PA 21..425 7..341 347 24.5 Plus
gl-PB 557 CG7672-PB 392..547 167..325 320 37.1 Plus
Meics-PB 571 CG8474-PB 343..474 214..345 296 39.4 Plus
Meics-PA 583 CG8474-PA 355..486 214..345 296 39.4 Plus
Meics-PB 571 CG8474-PB 371..484 214..327 279 40.4 Plus
Meics-PA 583 CG8474-PA 383..496 214..327 279 40.4 Plus
Meics-PB 571 CG8474-PB 316..423 215..322 268 42.6 Plus
Meics-PA 583 CG8474-PA 328..435 215..322 268 42.6 Plus
Meics-PB 571 CG8474-PB 427..571 214..325 176 28.1 Plus
Meics-PA 583 CG8474-PA 439..583 214..325 176 28.1 Plus