Clone Sequence Records
BO01476.3prime Sequence
892 bp (793 high quality bases) assembled on 2005-11-30
> BO01476.3prime
ATGGTCTAGAAAGCTTGCCGTGTCAATCTCGCCCTGCATGCTCTTGATGT
ACTCGCATGCCTTGATCAGGATCTGCGATTTGGAGTCATTGGGCGGCGCT
CGTCCGCTGGAACTGCTGGCATTGCCTTTGGAATGGCTACTTCCGTTGGT
ACTCGTACTTCCGCTGGTGCTGGGACTCGTGCTGGCCTCGCTGAAACTGG
AGCTGGAGCTCAGACTGGGCAGCATCTCCTTGAGCTTGAAGATCCAGCTG
TTGATCTTGTCGCGGCGCCGGCGTTCGACCTCGTTGTGCGTGGCACGACG
TTTATCATCGCGTTTCTTGTACGCCTCCAGTTTGCTGGATGGTGTTTGGC
CAGCTGATTCTGGCTGGGATCGGGCTTGGGCGTGAGCATGGCCATGGCCA
TGACCATTGCCATGGGAGCCATACAGGACACTGGTGGTGGTGGTGGTGCT
AGTGGTGCTGGTGGTGGTGTTGATGTTACCTGGAATGGGAGGATTCACGG
TCTGGGCGGTTATTACCGCGGACTGTGTGCTGGAGGAAGTTGTAACAGAT
GGAAGGAGCGGCTTTTCGCTTAGCGTATCTAGTTCCAGCTTGATGGCCGC
CTTCGTCGGCGGCTCACCCATTAAGCTGCCGGTTTCCTTGACCAAATATA
TCTCACAGCCAGTGGGCAGCTGCAGATTGTTGGGCAGCTGCAAATTGCTA
GGCAGCAGCGAATGGATATCTAGATCACATCCCGGTTCCTGTTTAATCGT
ATAGTACTCCTGCGAATCGTCCGAGTTCTCGTCTCCGCAAATGGTGAGAA
ATATCTGAGCACCTTGGCTATTCATCAGCGGATTTCCCGTGTCGCTGGTG
AGAATCAGACTTTGCTGACCATTGGCAAGGAACTGTGGACCA
BO01476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17592-PA | 1047 | Usf-RA | 185..1044 | 878..19 | 4300 | 100 | Minus |
| CG17592-PB | 1314 | Usf-RB | 185..1044 | 878..19 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Usf-RC | 3617 | CG17592-RC | 536..1410 | 892..19 | 4350 | 99.9 | Minus |
| Usf-RB | 2954 | CG17592-RB | 536..1410 | 892..19 | 4350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4547385..4548259 | 19..892 | 4325 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:05:40 has no hits.
BO01476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:17 Download gff for
BO01476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-PA | 171..1047 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:43 Download gff for
BO01476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17592-PB | 171..1048 | 13..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:29 Download gff for
BO01476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 512..1389 | 13..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:57 Download gff for
BO01476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 537..1414 | 13..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:57 Download gff for
BO01476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4547385..4548258 | 19..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:29 Download gff for
BO01476.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4441418..4442291 | 19..891 | 99 | | Plus |
BO01476.5prime Sequence
869 bp (743 high quality bases) assembled on 2005-11-30
> BO01476.5prime
GAAGTTATCAGTCGACATGAATGTTCACAAGCGGCCACGTCTGAATATGG
AATTCGGCTCCTCCACCAGCAATACCAACACTTCCACATCCCCGTCCTCC
GTAAATATCAGCAATGCGAATCCAACAGCTGGACCTGGCCTCATGACCAT
TACCAATCACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCT
TTGCCAATGGTCAGCAAAGTCTGATTCTCACCAGCGACACGGGAAATCCG
CTGATGAATAGCCAAGGTGCTCAGATATTTCTCACCATTTGCGGAGACGA
GAACTCGGACGATTCGCAGGAGTACTATACGATTAAACAGGAACCGGGAT
GTGATCTAGATATCCATTCGCTGCTGCCTAGCAATTTGCAGCTGCCCAAC
AATCTGCAGCTGCCCACTGGCTGTGAGATATATTTGGTCAAGGAAACCGG
CAGCTTAATGGGTGAGCCGCCGACGAAGGCGGCCATCAAGCTGGAACTAG
ATACGCTAAGCGAAAAGCCGCTCCTTCCATCTGTTACAACTTCCTCCAGC
ACACAGTCCGCGGTAATAACCGCCCAGACCGTGAATCCTCCCATTCCAGG
TAACATCAACACCACCACCAGCACCACTAGCACCACCACCACCACCAGTG
TCCTGTATGGCTCCCATGGCAATGGTCATGGCCATGGCCATGCTCACGCC
CAAGCCCGATCCCAGCCAGAATCAGCTGGCCAAACACCATCCAGCAAACT
GGAGGCGTACAAGAAACGCGATGATAAACGTCGTGCCACGCACAACGAGG
TCGAACGCCGGCGCCGCGACAAGATCAACAGCTGGATCTTTCAGCTCAAG
GAGATGCTGCCCAGTCTGA
BO01476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17592-PA | 1047 | Usf-RA | 1..853 | 17..869 | 4215 | 99.7 | Plus |
| CG17592-PB | 1314 | Usf-RB | 1..853 | 17..869 | 4215 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Usf-RC | 3617 | CG17592-RC | 367..1219 | 17..869 | 4235 | 99.8 | Plus |
| Usf-RB | 2954 | CG17592-RB | 367..1219 | 17..869 | 4235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4547576..4548428 | 869..17 | 4235 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:18:13 has no hits.
BO01476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:18 Download gff for
BO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:44 Download gff for
BO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17592-PB | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:45 Download gff for
BO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 342..1193 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:48 Download gff for
BO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 367..1218 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:48 Download gff for
BO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4547577..4548428 | 17..868 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:45 Download gff for
BO01476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4441610..4442461 | 17..868 | 99 | | Minus |
BO01476.complete Sequence
1078 bp (1078 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629513
> BO01476.complete
GAAGTTATCAGTCGACATGAATGTTCACAAGCGGCCACGTCTGAATATGG
AATTCGGCTCCTCCACCAGCAATACCAACACTTCCACATCCCCGTCCTCC
GTAAATATCAGCAATGCGAATCCAACAGCTGGACCTGGCCTCATGACCAT
TACCAATCACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCT
TTGCCAATGGTCAGCAAAGTCTGATTCTCACCAGCGACACGGGAAATCCG
CTGATGAATAGCCAAGGTGCTCAGATATTTCTCACCATTTGCGGAGACGA
GAACTCGGACGATTCGCAGGAGTACTATACGATTAAACAGGAACCGGGAT
GTGATCTAGATATCCATTCGCTGCTGCCTAGCAATTTGCAGCTGCCCAAC
AATCTGCAGCTGCCCACTGGCTGTGAGATATATTTGGTCAAGGAAACCGG
CAGCTTAATGGGTGAGCCGCCGACGAAGGCGGCCATCAAGCTGGAACTAG
ATACGCTAAGCGAAAAGCCGCTCCTTCCATCTGTTACAACTTCCTCCAGC
ACACAGTCCGCGGTAATAACCGCCCAGACCGTGAATCCTCCCATTCCAGG
TAACATCAACACCACCACCAGCACCACTAGCACCACCACCACCACCAGTG
TCCTGTATGGCTCCCATGGCAATGGTCATGGCCATGGCCATGCTCACGCC
CAAGCCCGATCCCAGCCAGAATCAGCTGGCCAAACACCATCCAGCAAACT
GGAGGCGTACAAGAAACGCGATGATAAACGTCGTGCCACGCACAACGAGG
TCGAACGCCGGCGCCGCGACAAGATCAACAGCTGGATCTTCAAGCTCAAG
GAGATGCTGCCCAGTCTGAGCTCCAGCTCCAGTTTCAGCGAGGCCAGCAC
GAGTCCCAGCACCAGCGGAAGTACGAGTACCAACGGAAGTAGCCATTCCA
AAGGCAATGCCAGCAGTTCCAGCGGACGAGCGCCGCCCAATGACTCCAAA
TCGCAGATCCTGATCAAGGCATGCGAGTACATCAAGAGCATGCAGGGCGA
GATTGACACGGCAAGCTTTCTAGACCAT
BO01476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Usf-RC | 1314 | CG17592-PC | 1..1044 | 17..1060 | 5220 | 100 | Plus |
| Usf-RB | 1314 | CG17592-PB | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Usf-RC | 3617 | CG17592-RC | 367..1410 | 17..1060 | 5220 | 100 | Plus |
| Usf-RB | 2954 | CG17592-RB | 367..1410 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4547385..4548428 | 1060..17 | 5220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:01 has no hits.
BO01476.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:00 Download gff for
BO01476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 1..1048 | 17..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:43 Download gff for
BO01476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 831..1878 | 17..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:28 Download gff for
BO01476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 342..1386 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:00 Download gff for
BO01476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 831..1878 | 17..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:32 Download gff for
BO01476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Usf-RB | 367..1411 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:32 Download gff for
BO01476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4547382..4548428 | 17..1062 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:28 Download gff for
BO01476.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4441415..4442461 | 17..1062 | 99 | | Minus |
BO01476.pep Sequence
Translation from 16 to 1078
> BO01476.pep
MNVHKRPRLNMEFGSSTSNTNTSTSPSSVNISNANPTAGPGLMTITNHHT
ADLSEALVHSSFANGQQSLILTSDTGNPLMNSQGAQIFLTICGDENSDDS
QEYYTIKQEPGCDLDIHSLLPSNLQLPNNLQLPTGCEIYLVKETGSLMGE
PPTKAAIKLELDTLSEKPLLPSVTTSSSTQSAVITAQTVNPPIPGNINTT
TSTTSTTTTTSVLYGSHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKK
RDDKRRATHNEVERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTS
GSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIKACEYIKSMQGEIDTAS
FLDH
BO01476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Usf-PC | 437 | CG17592-PC | 1..348 | 1..348 | 1787 | 100 | Plus |
| Usf-PB | 437 | CG17592-PB | 1..348 | 1..348 | 1787 | 100 | Plus |
