Clone Sequence Records
BO01477.3prime Sequence
878 bp (773 high quality bases) assembled on 2005-11-30
> BO01477.3prime
ATGGTCTAGAAAGCTTGCGCTTTCGTCCTTGTACTTGGCGTCCTTCAGAA
TGTTGGCGAACTCGAACTTGACCCGCTCCCGTTCCGATCTCCGCATGCTG
CGCAGTGTGTCCACCAGCGATAGGCAGTAGAGCTCGATGGGATCGTTGAA
GGACGACGTCACTTGGGTCTGAAGCGGCGCTTGGGTTGCCTTGCGCTTGA
AGGGATTGGTCAGAAAATCGCTGGGTAATGCGCGTCTGATAGCCGCAGGC
TTGTAAATGGGCTCAATGGTCACTTCTCCGTTGGACAGCGAGCTATTCTT
GAACGGCTTTTGCTCCTGTGTCTGCTGCTGTTCTAGATGCACCTCCTGGC
CATAGCCATTGCCCATTACAACCATCGGCGTTAGCAGGGGCGAGGAGGCC
GGCGAGCTGGCTTGGTCATGTTCGTGGCTGTGATTGCTGCTGCTGGTGCC
GTTCAGTGTCGTCGGCAGGGATAATTGCTGCTTGGACTCTCCCATGACCA
GCTGCAACTCGGGCACAATCTCGTTGTCGTCGCTATTTGAGCCATCGTCG
CTGTTGTCCAGCTCGATGATGTCGTAGCCCTCGGAGGCGTCGATCTTTAG
GTGCTCCGGATCGGGATACAAAAAGCTATTGCTGTCGTTGTCACTTCCCA
TTCCATTCTGTTGGGCCACGTAGCTCTGGGATTTCTTCACATTGTAGGTT
TGGGCCGTGTTCTGCAGAAAGGATAGATCCTCAGTGAAGCGCCGCTTGCG
TACGTTCGGATTCGCCTGGCCCGTCTNCATCGCCTTGACCTCCTGCAGAT
AGTTGTATCGTATGTTCTTCCATTTGGTTTGCAGAAATCGGGGAGAGGCG
CCCAGTTCGTTGGCAATGCGATCCCATA
BO01477.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12767-PA | 1047 | Dip3-RA | 185..1044 | 878..19 | 4206 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1471 | CG12767-RA | 368..1227 | 878..19 | 4244 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18129179..18130002 | 842..19 | 4094 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-11 02:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2385 | 348..292 | 116 | 69 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1121 | 348..292 | 116 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6791 | 348..292 | 109 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6812 | 348..292 | 109 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6833 | 348..292 | 109 | 68.4 | Minus |
BO01477.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:19 Download gff for
BO01477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-PA | 186..1047 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:46 Download gff for
BO01477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12767-PA | 186..1047 | 15..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:46 Download gff for
BO01477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 369..1231 | 14..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:45:19 Download gff for
BO01477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 369..1231 | 14..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:45:19 Download gff for
BO01477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18129067..18129099 | 845..877 | 100 | <- | Minus |
2R | 18129177..18130006 | 14..844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:46 Download gff for
BO01477.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14016572..14016604 | 845..877 | 100 | <- | Minus |
arm_2R | 14016682..14017511 | 14..844 | 99 | | Minus |
BO01477.5prime Sequence
764 bp (711 high quality bases) assembled on 2005-11-30
> BO01477.5prime
GAAGTTATCAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTC
CCAAGACGGAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGA
CCCGAGTTCGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCAT
CTATGATGTCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACA
TATGGGATCGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAA
ACCAAATGGAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGAT
TGAGACGGGCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGG
ATCTATCCTTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCC
CAGAGCTACGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAA
TAGCTTTTTGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGG
GCTACGACATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGAC
GACAACGAGATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCA
GCAATTATCCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACA
GCCACGAACATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACG
CCGATGGTTGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACA
GCAGCAGACACAGG
BO01477.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12767-PA | 1047 | Dip3-RA | 1..748 | 17..764 | 3740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1471 | CG12767-RA | 180..931 | 13..764 | 3745 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18129179..18129706 | 237..764 | 2640 | 100 | Plus |
2R | 25286936 | 2R | 18128975..18129101 | 110..236 | 635 | 100 | Plus |
2R | 25286936 | 2R | 18128673..18128770 | 13..110 | 475 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:22:18 has no hits.
BO01477.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:20 Download gff for
BO01477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-PA | 1..748 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:47 Download gff for
BO01477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12767-PA | 1..748 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:32 Download gff for
BO01477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 171..931 | 2..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:05:58 Download gff for
BO01477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 171..931 | 2..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:05:58 Download gff for
BO01477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18128664..18128770 | 2..110 | 95 | -> | Plus |
2R | 18128976..18129101 | 111..236 | 100 | -> | Plus |
2R | 18129179..18129706 | 237..764 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:32 Download gff for
BO01477.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14016169..14016275 | 2..110 | 95 | -> | Plus |
arm_2R | 14016481..14016606 | 111..236 | 100 | -> | Plus |
arm_2R | 14016684..14017211 | 237..764 | 100 | | Plus |
BO01477.complete Sequence
1078 bp (1078 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629514
> BO01477.complete
GAAGTTATCAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTC
CCAAGACGGAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGA
CCCGAGTTCGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCAT
CTATGATGTCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACA
TATGGGATCGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAA
ACCAAATGGAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGAT
TGAGACGGGCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGG
ATCTATCCTTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCC
CAGAGCTACGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAA
TAGCTTTTTGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGG
GCTACGACATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGAC
GACAACGAGATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCA
GCAATTATCCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACA
GCCACGAACATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACG
CCGATGGTTGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACA
GCAGCAGACACAGGAGCAAAAGCCGTTCAAGAATAGCTCGCTGTCCAACG
GAGAAGTGACCATTGAGCCCATTTACAAGCCTGCGGCTATCAGACGCGCA
TTACCCAGCGATTTTCTGACCAATCCCTTCAAGCGCAAGGCAACCCAAGC
GCCGCTTCAGACCCAAGTGACGTCGTCCTTCAACGATCCCATCGAGCTCT
ACTGCCTATCGCTGGTGGACACACTGCGCAGCATGCGGAGATCGGAACGG
GAGCGGGTCAAGTTCGAGTTCGCCAACATTCTGAAGGACGCCAAGTACAA
GGACGAAAGCGCAAGCTTTCTAGACCAT
BO01477.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1047 | CG12767-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1471 | CG12767-RA | 180..1227 | 13..1060 | 5225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18129179..18130002 | 237..1060 | 4120 | 100 | Plus |
2R | 25286936 | 2R | 18128975..18129101 | 110..236 | 635 | 100 | Plus |
2R | 25286936 | 2R | 18128673..18128770 | 13..110 | 475 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 01:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2385 | 731..787 | 116 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1121 | 731..787 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6791 | 731..787 | 109 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6812 | 731..787 | 109 | 68.4 | Plus |
BO01477.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:46:01 Download gff for
BO01477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 1..1047 | 17..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:45 Download gff for
BO01477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 165..1225 | 2..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:57 Download gff for
BO01477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 184..1227 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:46:01 Download gff for
BO01477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 165..1225 | 2..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:37 Download gff for
BO01477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 184..1227 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:37 Download gff for
BO01477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18128677..18128770 | 17..110 | 100 | -> | Plus |
2R | 18128976..18129101 | 111..236 | 100 | -> | Plus |
2R | 18129179..18130002 | 237..1062 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:57 Download gff for
BO01477.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14016182..14016275 | 17..110 | 100 | -> | Plus |
arm_2R | 14016481..14016606 | 111..236 | 100 | -> | Plus |
arm_2R | 14016684..14017507 | 237..1062 | 99 | | Plus |
BO01477.pep Sequence
Translation from 16 to 1078
> BO01477.pep
MSRKNGNQDTFPKTEKMQRYYAERETTGPEFDDRLIKLVRANPAIYDVSH
PHYRRNPVRVDIWDRIANELGASSRFLQTKWKNIRYNYLQEVKAIETGQA
NPNVRKRRFTEDLSFLQNTAQTYNVKKSQSYVAQQNGMGSDNDSNSFLYP
DPEHLKIDASEGYDIIELDNSDDGSNSDDNEIVPELQLVMGESKQQLSLP
TTLNGTSSSNHSHEHDQASSPASSPLLTPMVVMGNGYGQEVHLEQQQTQE
QKPFKNSSLSNGEVTIEPIYKPAAIRRALPSDFLTNPFKRKATQAPLQTQ
VTSSFNDPIELYCLSLVDTLRSMRRSERERVKFEFANILKDAKYKDESAS
FLDH
BO01477.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-PA | 348 | CG12767-PA | 1..348 | 1..348 | 1807 | 100 | Plus |