Clone Sequence Records
BO01480.3prime Sequence
859 bp (745 high quality bases) assembled on 2005-11-30
> BO01480.3prime
ATGGTCTAGAAAGCTTGCAAAGAACGTGACGGTGGCTTCCTTGGCCTCCG
CCGACTCTGGCTTCTCGACCGGCTGGTGGACCCGCTTGTGCACCTTCAGG
GTGTACTTGTCCACGAACGATTTCTCGCAGTCGGGGCAGGGGTAGCGCGG
CCGGTCCGTCTGGTGGGTGCGCAAGTGGTGCTTGTAGGTGCGCTTGGTCT
TGAACTGCTGGTGGCACACCTCGCAGATCAGGGCGTTCTCCTCGGCGTCG
TGGCGCATCAGATGGTTGTACATCAGCCAGGAGAGCGAGAAGCGTTCGCC
GCACTTGTCGCACTGGTACTTCTTCTTGTCCCAGTGCACCTCCATGTGGC
GCAGGACGTTCCGCTTGTGCGAGAACTTTTTGTCGCAGTAGCGGCATTCA
AGTTCTGTTTTGCCCTCGTGCAAGTTCATATGCAGATCGAGTACCTCGTC
GTCCTTCACTTTCAAGCCACACACGTTGCAGGTGGCCTGCTCGCTCTTCT
GGCAGGTGTCCGCCTTGATGTGCCGCTCGAGCACCTCCTGGCTGGAAAAC
ATCTCGCCGCAGATATGGCAGGGTATCTCGGTGGTCTCGGTGAAGAACTC
CTCCTCCGACGACGGCATGCTGTCGTCCGGCTCGCTGAACTGGAACTCCT
CGTCCAGCATCTCCTCCTTCATGAATTCCTCGCACTCATCCTCCTCGCCC
GGCTGCCTTTCGGGCTCCTTGAGGGCGGTGGCCTGGACGATCTTGAAGGC
CGGCACCTGGACGCGGGCCCTCTTTGCCGCCTGTTGCTTGGTCTCCGCCT
TGCCCTCCACCTGCCTGCAGCCGAGCAGTGCGTCCGCAATCTGGCGCTGC
ACTTGGCTG
BO01480.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7938-PA | 1071 | Sry-beta-RA | 228..1068 | 859..19 | 4205 | 100 | Minus |
CG17958-PA | 1302 | Sry-delta-RA | 815..855 | 338..298 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 322..1162 | 859..19 | 4205 | 100 | Minus |
Sry-beta-RA | 1260 | CG7938-RA | 322..1162 | 859..19 | 4205 | 100 | Minus |
Sry-alpha-RB | 3353 | CG17957-RB | 375..1215 | 859..19 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30040093..30040933 | 859..19 | 4205 | 100 | Minus |
3R | 32079331 | 3R | 30044196..30044333 | 435..298 | 300 | 81.2 | Minus |
Blast to na_te.dros performed 2015-02-11 04:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 616..581 | 117 | 80.6 | Minus |
BO01480.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:24 Download gff for
BO01480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 228..1071 | 18..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:54 Download gff for
BO01480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 228..1071 | 18..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:34 Download gff for
BO01480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 322..1162 | 19..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:06:36 Download gff for
BO01480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-alpha-RB | 375..1215 | 19..859 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:06:36 Download gff for
BO01480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30040093..30040933 | 19..859 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:34 Download gff for
BO01480.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865815..25866655 | 19..859 | 100 | | Minus |
BO01480.5prime Sequence
855 bp (720 high quality bases) assembled on 2005-11-30
> BO01480.5prime
GAAGTTATCAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCG
GCAAGGAGAAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTG
CCAGGAACCTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGAT
CATAAACCAGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACT
GCCTGGAGTACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAA
GTGCAGCGCCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGG
CAAGGCGGAGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGC
CGGCCTTCAAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAG
CCGGGCGAGGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGA
CGAGGAGTTCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGG
AGGAGTTCTTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAG
ATGTTTTCCAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTG
CCAGAAGAGCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGG
ACGACGAGGTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAA
CTTGAATGCCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCT
GCGCCACATGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGT
GCGGCGAACGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGC
CACGA
BO01480.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7938-PA | 1071 | Sry-beta-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
CG17958-PA | 1302 | Sry-delta-RA | 815..855 | 765..805 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 95..933 | 17..855 | 4195 | 100 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 95..933 | 17..855 | 4195 | 100 | Plus |
Sry-alpha-RB | 3353 | CG17957-RB | 219..986 | 88..855 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30039937..30040704 | 88..855 | 3840 | 100 | Plus |
3R | 32079331 | 3R | 30039813..30039886 | 17..90 | 370 | 100 | Plus |
3R | 32079331 | 3R | 30044196..30044333 | 668..805 | 300 | 81.2 | Plus |
Blast to na_te.dros performed 2015-02-10 15:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 487..522 | 117 | 80.6 | Plus |
BO01480.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:25 Download gff for
BO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:55 Download gff for
BO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:34:57 Download gff for
BO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..932 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:54 Download gff for
BO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..932 | 17..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:54 Download gff for
BO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30039813..30039885 | 17..89 | 100 | -> | Plus |
3R | 30039939..30040703 | 90..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:34:57 Download gff for
BO01480.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865535..25865607 | 17..89 | 100 | -> | Plus |
arm_3R | 25865661..25866425 | 90..854 | 100 | | Plus |
BO01480.complete Sequence
1102 bp (1102 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629515
> BO01480.complete
GAAGTTATCAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCG
GCAAGGAGAAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTG
CCAGGAACCTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGAT
CATAAACCAGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACT
GCCTGGAGTACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAA
GTGCAGCGCCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGG
CAAGGCGGAGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGC
CGGCCTTCAAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAG
CCGGGCGAGGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGA
CGAGGAGTTCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGG
AGGAGTTCTTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAG
ATGTTTTCCAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTG
CCAGAAGAGCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGG
ACGACGAGGTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAA
CTTGAATGCCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCT
GCGCCACATGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGT
GCGGCGAACGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGC
CACGACGCCGAGGAGAACGCCCTGATCTGCGAGGTGTGCCACCAGCAGTT
CAAGACCAAGCGCACCTACAAGCACCACTTGCGCACCCACCAGACGGACC
GGCCGCGCTACCCCTGCCCCGACTGCGAGAAATCGTTCGTGGACAAGTAC
ACCCTGAAGGTGCACAAGCGGGTCCACCAGCCGGTCGAGAAGCCAGAGTC
GGCGGAGGCCAAGGAAGCCACCGTCACGTTCTTTGCAAGCTTTCTAGACC
AT
BO01480.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 1071 | CG7938-PB | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Sry-beta-RA | 1071 | CG7938-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Sry-delta-RA | 1302 | CG17958-PA | 718..855 | 668..805 | 300 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 95..1162 | 17..1084 | 5340 | 100 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 95..1162 | 17..1084 | 5340 | 100 | Plus |
Sry-alpha-RB | 3353 | CG17957-RB | 219..1215 | 88..1084 | 4985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30039937..30040933 | 88..1084 | 4985 | 100 | Plus |
3R | 32079331 | 3R | 30039813..30039886 | 17..90 | 370 | 100 | Plus |
3R | 32079331 | 3R | 30044196..30044333 | 668..805 | 300 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-27 13:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 487..522 | 117 | 80.6 | Plus |
BO01480.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:47 Download gff for
BO01480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 1..1071 | 17..1085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:26 Download gff for
BO01480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 82..1149 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:27 Download gff for
BO01480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..1162 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:48 Download gff for
BO01480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 82..1149 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:37 Download gff for
BO01480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 95..1162 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:37 Download gff for
BO01480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30039813..30039885 | 17..89 | 100 | -> | Plus |
3R | 30039939..30040933 | 90..1086 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:27 Download gff for
BO01480.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865535..25865607 | 17..89 | 100 | -> | Plus |
arm_3R | 25865661..25866655 | 90..1086 | 99 | | Plus |
BO01480.pep Sequence
Translation from 16 to 1102
> BO01480.pep
MSSTRPFCFVCGKEKSVGVFQLIEGCIVPGTFKPIKDILKYFEKIINQRL
ELLPNSAACRDCLEYLFNYDRLVRNLSQVQRQIADALLGCRQVEGKAETK
QQAAKRARVQVPAFKIVQATALKEPERQPGEEDECEEFMKEEMLDEEFQF
SEPDDSMPSSEEEFFTETTEIPCHICGEMFSSQEVLERHIKADTCQKSEQ
ATCNVCGLKVKDDEVLDLHMNLHEGKTELECRYCDKKFSHKRNVLRHMEV
HWDKKKYQCDKCGERFSLSWLMYNHLMRHDAEENALICEVCHQQFKTKRT
YKHHLRTHQTDRPRYPCPDCEKSFVDKYTLKVHKRVHQPVEKPESAEAKE
ATVTFFASFLDH
BO01480.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-PB | 356 | CG7938-PB | 1..356 | 1..356 | 1928 | 100 | Plus |
Sry-beta-PA | 356 | CG7938-PA | 1..356 | 1..356 | 1928 | 100 | Plus |
Sry-delta-PA | 433 | CG17958-PA | 30..360 | 28..338 | 597 | 35.9 | Plus |
CG7928-PA | 457 | CG7928-PA | 195..420 | 119..338 | 295 | 30.3 | Plus |
Opbp-PA | 562 | CG30443-PA | 188..405 | 136..337 | 273 | 27.5 | Plus |
CG7928-PA | 457 | CG7928-PA | 70..367 | 44..342 | 173 | 25.6 | Plus |
CG7928-PA | 457 | CG7928-PA | 311..450 | 170..306 | 165 | 28.2 | Plus |