Clone Sequence Records
BO01483.3prime Sequence
863 bp (770 high quality bases) assembled on 2005-11-30
> BO01483.3prime
ATGGTCTAGAAAGCTTGCGGGGCTTAGATCCTGATGGAGATTTGGGTCGT
AGCCGCCCATGCTGTTGTCGTACGGTTGCTGCTGGTCGTATCCGCCGGAG
CCCATTGGATAGCCCATGGAATCCTGTGGCGGAGCGGGTGACATCATGGG
TGTGGTTGTCCCGCTGGGTGGACCGGCCATGGAATACGGTGAAGCACCAG
CCGCCTTCTTGGCCGCATACAAATTGGCCTCCTCCTGTGCCTTACCAATG
TTCTTCTTATAGCGAATACGCTTGTTGCCAAACCAATTCGATACTTGCGA
GACCGTGATGCCACACTTTCGTGCCAACTCCTCTTTGGCCTCTTCGGATG
GATATGGGTTGCTCAAGTGACTGTAGAAGTACTCGTTGAGAATCTCGGAT
GCCTGCTTGCTGAAATTGCGGCGTTTGCGGCGTGCGTCCAGGAAACGCGA
ACGAAGTATCATTACAGCCTCGCAGGTCGACTGCTTCAGCTGCATTTGTA
TGGAACTAAACTTTTTGTGGATGATCTGCACCATTCGCTCGATTTCCTTT
GGTGTAATGGGTCTCGTGCGACTCTGTTCGCGTAGAAGATTCATGACATG
CGTGGTGAACTCGTTGCATGCCTGCTCGTACTTCTCCAATTCCTGGTGAT
ATATTTGACGGATCTGTGCCAGCTTGGCACGGTAGTCGGAATGCTCAATG
GCATTGTCAGCACCATCGATGGACAGGGAACCGCCCTGGCTGGCCGCAGC
CGCAGAGGCAGCCGCTGCTCCGCCACCGCCCTTCTCGGGTCCGGCCACGC
CCTCGGCAATCAGCATGTTGTCCAAGCGCATCAGTTTGCGATCTGGGGGC
TCCTCCTCCTGGG
BO01483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8933-PB | 1131 | exd-RB | 311..1128 | 836..19 | 4090 | 100 | Minus |
CG8933-PA | 1131 | exd-RA | 311..1128 | 836..19 | 4090 | 100 | Minus |
CG8933-PC | 1131 | exd-RC | 311..1128 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 2883 | CG8933-RE | 499..1343 | 863..19 | 4180 | 99.8 | Minus |
exd-RD | 2930 | CG8933-RD | 546..1390 | 863..19 | 4180 | 99.8 | Minus |
exd-RA | 2386 | CG8933-RA | 515..1359 | 863..19 | 4180 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15993983..15994283 | 863..563 | 1460 | 99 | Minus |
X | 23542271 | X | 15994684..15994969 | 304..19 | 1430 | 100 | Minus |
X | 23542271 | X | 15994345..15994607 | 564..302 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:06:24 has no hits.
BO01483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:26 Download gff for
BO01483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-PC | 284..1131 | 16..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:56 Download gff for
BO01483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8933-PC | 284..1131 | 16..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:30 Download gff for
BO01483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 515..1359 | 19..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:17 Download gff for
BO01483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 515..1359 | 19..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:17 Download gff for
BO01483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15993983..15994283 | 563..863 | 99 | -> | Minus |
X | 15994347..15994605 | 304..562 | 100 | -> | Minus |
X | 15994685..15994969 | 19..303 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:30 Download gff for
BO01483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15888016..15888316 | 563..863 | 99 | -> | Minus |
arm_X | 15888380..15888638 | 304..562 | 100 | -> | Minus |
arm_X | 15888718..15889002 | 19..303 | 100 | | Minus |
BO01483.5prime Sequence
824 bp (733 high quality bases) assembled on 2005-11-30
> BO01483.5prime
GAAGTTATCAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCG
GCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGC
CAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGA
GATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCC
AGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTC
TCTGTACTTTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACAC
CCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGC
TGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCG
GCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGG
TGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGA
TCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAAC
GAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAG
ACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAA
AGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTA
ATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTT
CAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGA
GCAACCCATATCCATCCGAAGAGG
BO01483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8933-PB | 1131 | exd-RB | 1..808 | 17..824 | 4040 | 100 | Plus |
CG8933-PA | 1131 | exd-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
CG8933-PC | 1131 | exd-RC | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 2883 | CG8933-RE | 215..1023 | 16..824 | 4045 | 100 | Plus |
exd-RD | 2930 | CG8933-RD | 262..1070 | 16..824 | 4045 | 100 | Plus |
exd-RA | 2386 | CG8933-RA | 231..1039 | 16..824 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15993964..15994283 | 281..600 | 1600 | 100 | Plus |
X | 23542271 | X | 15993508..15993773 | 16..281 | 1330 | 100 | Plus |
X | 23542271 | X | 15994345..15994570 | 599..824 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:12 has no hits.
BO01483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:27 Download gff for
BO01483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-PC | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:29:58 Download gff for
BO01483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8933-PC | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:11 Download gff for
BO01483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 231..1039 | 16..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:28 Download gff for
BO01483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 231..1039 | 16..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:28 Download gff for
BO01483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15993508..15993773 | 16..281 | 100 | -> | Plus |
X | 15993965..15994283 | 282..600 | 100 | -> | Plus |
X | 15994347..15994570 | 601..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:11 Download gff for
BO01483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15887541..15887806 | 16..281 | 100 | -> | Plus |
arm_X | 15887998..15888316 | 282..600 | 100 | -> | Plus |
arm_X | 15888380..15888603 | 601..824 | 100 | | Plus |
BO01483.complete Sequence
1162 bp (1162 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629516
> BO01483.complete
GAAGTTATCAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCG
GCGGCATGATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGC
CAGAATGCCGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGA
GATATTGCAACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCC
AGGCCAGAAAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTC
TCTGTACTTTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACAC
CCAGGAGGAGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGC
TGATTGCCGAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCG
GCTGCCTCTGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGG
TGCTGACAATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGA
TCCGTCAAATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAAC
GAGTTCACCACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAG
ACCCATTACACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAA
AGTTTAGTTCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTA
ATGATACTTCGTTCGCGTTTCCTGGACGCACGCCGCAAACGCCGCAATTT
CAGCAAGCAGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGA
GCAACCCATATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGT
GGCATCACGGTCTCGCAAGTATCGAATTGGTTTGGCAACAAGCGTATTCG
CTATAAGAAGAACATTGGTAAGGCACAGGAGGAGGCCAATTTGTATGCGG
CCAAGAAGGCGGCTGGTGCTTCACCGTATTCCATGGCCGGTCCACCCAGC
GGGACAACCACACCCATGATGTCACCCGCTCCGCCACAGGATTCCATGGG
CTATCCAATGGGCTCCGGCGGATACGACCAGCAGCAACCGTACGACAACA
GCATGGGCGGCTACGACCCAAATCTCCATCAGGATCTAAGCCCCGCAAGC
TTTCTAGACCAT
BO01483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 1131 | CG8933-PE | 1..1128 | 17..1144 | 5640 | 100 | Plus |
exd-RD | 1131 | CG8933-PD | 1..1128 | 17..1144 | 5640 | 100 | Plus |
exd-RA | 1131 | CG8933-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 2883 | CG8933-RE | 215..1343 | 16..1144 | 5645 | 100 | Plus |
exd-RD | 2930 | CG8933-RD | 262..1390 | 16..1144 | 5645 | 100 | Plus |
exd-RA | 2386 | CG8933-RA | 231..1359 | 16..1144 | 5645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15993964..15994283 | 281..600 | 1600 | 100 | Plus |
X | 23542271 | X | 15994684..15994969 | 859..1144 | 1430 | 100 | Plus |
X | 23542271 | X | 15993508..15993773 | 16..281 | 1330 | 100 | Plus |
X | 23542271 | X | 15994345..15994607 | 599..861 | 1315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:53:31 has no hits.
BO01483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:48 Download gff for
BO01483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RC | 1..1131 | 17..1147 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:28 Download gff for
BO01483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RC | 256..1384 | 16..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:52 Download gff for
BO01483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 232..1359 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:49 Download gff for
BO01483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RC | 256..1384 | 16..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:00 Download gff for
BO01483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 232..1359 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:00 Download gff for
BO01483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15994685..15994969 | 860..1146 | 99 | | Plus |
X | 15993509..15993773 | 17..281 | 100 | -> | Plus |
X | 15993965..15994283 | 282..600 | 100 | -> | Plus |
X | 15994347..15994605 | 601..859 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:52 Download gff for
BO01483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15887542..15887806 | 17..281 | 100 | -> | Plus |
arm_X | 15887998..15888316 | 282..600 | 100 | -> | Plus |
arm_X | 15888380..15888638 | 601..859 | 100 | -> | Plus |
arm_X | 15888718..15889002 | 860..1146 | 99 | | Plus |
BO01483.pep Sequence
Translation from 16 to 1162
> BO01483.pep
MEDPNRMLAHTGGMMAPQGYGLSGQDDGQNAGSENEVRKQKDIGEILQQI
MSISEQSLDEAQARKHTLNCHRMKPALFSVLCEIKEKTVLSIRNTQEEEP
PDPQLMRLDNMLIAEGVAGPEKGGGGAAAASAAAASQGGSLSIDGADNAI
EHSDYRAKLAQIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPK
EIERMVQIIHKKFSSIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQAS
EILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKKNI
GKAQEEANLYAAKKAAGASPYSMAGPPSGTTTPMMSPAPPQDSMGYPMGS
GGYDQQQPYDNSMGGYDPNLHQDLSPASFLDH
BO01483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-PE | 376 | CG8933-PE | 1..376 | 1..376 | 1953 | 100 | Plus |
exd-PD | 376 | CG8933-PD | 1..376 | 1..376 | 1953 | 100 | Plus |
exd-PA | 376 | CG8933-PA | 1..376 | 1..376 | 1953 | 100 | Plus |
exd-PB | 376 | CG8933-PB | 1..376 | 1..376 | 1953 | 100 | Plus |
hth-PA | 472 | CG17117-PA | 351..457 | 239..372 | 155 | 30.6 | Plus |