Clone Sequence Records
BO01486.3prime Sequence
871 bp (737 high quality bases) assembled on 2005-11-30
> BO01486.3prime
ATGGTCTAGAAAGCTTGCGGAGCCGTGCAGCGCGTTGCTCTGCGCACTGT
TGCCGCCTCCACCGCCGCCACCGCCTCCGGCGGATCCGTTAACGTTCTGC
GCCGACACCTCCGACTTGACACGCCGGGCGATGTGCGATCGTGTGTGCTT
GCGCAAGTGATCCTTGCGATAGAAACCTTTTCCACACTCAATGCAAACAT
GCTTCTTCTCGCCGGAATGGATGACAATGTGCAGAGTGAGCTGCTCCTTG
CGCTTGAAGGACTTCATGCAGATATTGCACACATGCGGCCTGTCCGGTAT
GTGGGAGAGCTTGTGCCTGGTCAGGTGGTCCTTGCGCTTCAGCGCCGCAT
TGCAGATGTCGCAGACGAAGCGCCGCTCAACGGCGTGCGAGATGACGTGC
TGCTCGATGAGGCTGCGATCCGGGTAGGCCATTTGGCACTCCGGGCAGCA
GTAGAGCGTCGAGCCATCCAGCGCCTTTGTCTCGCGGATTTCTCCCGGTT
TGGGGCGCGGCTTCTTCTCCTTTGGTGGTTTCTTCTTTTTGGTCTTCTTG
CCGCTGGCCGTGCCTGTGCCGCCGCTGGCGTTTGTTGTGCCCACAGATCC
GGAGCTCGAGACGGCGCCGGCGCCACCATTGGTCACAGTGCCGTTAGCAT
TGCCATTCACTCCGTTGCTAGCTCCGTTCGTCAGCGCCGCTCCGTTGGCG
TCCGTCATGTTGGTCATGTGACCGCCATGGTCCATGCCCACCAGTCCGTT
GTGGTGGCCGCCATTCGCACCGTTGTTGCTGGGGCGTAGGGCCACGCCCC
CCAGCGCCAGGCTGGCCAAAATTTGTGCCGTTCTTCAGGACATCGCCCGG
TGGACTCCTTCTTGATCGTCT
BO01486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6930-PA | 1143 | CG6930-RA | 376..1140 | 783..19 | 3825 | 100 | Minus |
CG6930-PB | 1344 | CG6930-RB | 577..1341 | 783..19 | 3825 | 100 | Minus |
CG6930-PC | 1344 | CG6930-RC | 577..1341 | 783..19 | 3825 | 100 | Minus |
CG6930-PA | 1143 | CG6930-RA | 339..372 | 820..787 | 170 | 100 | Minus |
CG6930-PB | 1344 | CG6930-RB | 540..573 | 820..787 | 170 | 100 | Minus |
CG6930-PC | 1344 | CG6930-RC | 540..573 | 820..787 | 170 | 100 | Minus |
CG7368-PB | 1593 | CG7368-RB | 1169..1230 | 266..205 | 160 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RL | 2247 | CG6930-RL | 1165..2015 | 871..19 | 4155 | 99.4 | Minus |
l(3)neo38-RK | 1611 | CG6930-RK | 529..1379 | 871..19 | 4155 | 99.4 | Minus |
l(3)neo38-RJ | 3691 | CG6930-RJ | 394..1244 | 871..19 | 4155 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11769370..11769965 | 274..871 | 2830 | 99 | Plus |
3R | 32079331 | 3R | 11768843..11769002 | 19..178 | 800 | 100 | Plus |
3R | 32079331 | 3R | 11769056..11769154 | 175..273 | 495 | 100 | Plus |
3L | 28110227 | 3L | 11603938..11604196 | 373..115 | 470 | 78.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:25:55 has no hits.
BO01486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:30 Download gff for
BO01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PA | 290..1143 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:02 Download gff for
BO01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PB | 491..1344 | 16..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:35:36 Download gff for
BO01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RJ | 394..1244 | 19..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:36:12 Download gff for
BO01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RJ | 394..1244 | 19..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:36:12 Download gff for
BO01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11768843..11769000 | 19..176 | 100 | <- | Plus |
3R | 11769058..11769154 | 177..273 | 100 | <- | Plus |
3R | 11769370..11769965 | 274..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:35:36 Download gff for
BO01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7594565..7594722 | 19..176 | 100 | <- | Plus |
arm_3R | 7594780..7594876 | 177..273 | 100 | <- | Plus |
arm_3R | 7595092..7595687 | 274..871 | 99 | | Plus |
BO01486.5prime Sequence
854 bp (670 high quality bases) assembled on 2005-11-30
> BO01486.5prime
GAAGTTATCAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCC
AGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTC
AATGCAGCCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGA
ACGTGACCGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACC
AATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCA
CACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTA
CTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCA
CAAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAAC
AACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGG
CGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACG
GAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGT
GGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAG
CGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCAC
CAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAG
GCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTA
CCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGC
GGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAGGACCAC
CTGA
BO01486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6930-PA | 1143 | CG6930-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
CG6930-PB | 1344 | CG6930-RB | 206..1039 | 21..854 | 4145 | 99.8 | Plus |
CG6930-PC | 1344 | CG6930-RC | 206..1039 | 21..854 | 4145 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RA | 1522 | CG6930-RA | 151..988 | 17..854 | 4175 | 99.9 | Plus |
l(3)neo38-RL | 2247 | CG6930-RL | 880..1713 | 21..854 | 4155 | 99.9 | Plus |
l(3)neo38-RK | 1611 | CG6930-RK | 244..1077 | 21..854 | 4155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11769417..11770105 | 854..166 | 3430 | 99.9 | Minus |
3R | 32079331 | 3R | 11771154..11771300 | 167..21 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:55:13 has no hits.
BO01486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:31 Download gff for
BO01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:03 Download gff for
BO01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:55 Download gff for
BO01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..987 | 8..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:56 Download gff for
BO01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..987 | 8..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:56 Download gff for
BO01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11771154..11771303 | 16..167 | 98 | | Minus |
3R | 11769418..11770103 | 168..853 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:55 Download gff for
BO01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7595140..7595825 | 168..853 | 99 | <- | Minus |
arm_3R | 7596876..7597025 | 16..167 | 98 | | Minus |
BO01486.complete Sequence
1174 bp (1174 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629517
> BO01486.complete
GAAGTTATCAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCC
AGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTC
AATGCAGCCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGA
ACGTGACCGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACC
AATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCA
CACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTA
CTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCA
CAAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAAC
AACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGG
CGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACG
GAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGT
GGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAG
CGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCAC
CAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAG
GCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTA
CCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGC
GGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAGGACCAC
CTGACCAGGCACAAGCTCTCCCACATACCGGACAGGCCGCATGTGTGCAA
TATCTGCATGAAGTCCTTCAAGCGCAAGGAGCAGCTCACTCTGCACATTG
TCATCCATTCCGGCGAGAAGAAGCATGTTTGCATTGAGTGTGGAAAAGGT
TTCTATCGCAAGGATCACTTGCGCAAGCACACACGATCGCACATCGCCCG
GCGTGTCAAGTCGGAGGTGTCGGCGCAGAACGTTAACGGATCCGCCGGAG
GCGGTGGCGGCGGTGGAGGCGGCAACAGTGCGCAGAGCAACGCGCTGCAC
GGCTCCGCAAGCTTTCTAGACCAT
BO01486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RA | 1143 | CG6930-PA | 1..1140 | 17..1156 | 5685 | 99.9 | Plus |
l(3)neo38-RL | 1368 | CG6930-PL | 206..1341 | 21..1156 | 5665 | 99.9 | Plus |
l(3)neo38-RK | 1344 | CG6930-PK | 206..1341 | 21..1156 | 5665 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RA | 1522 | CG6930-RA | 151..1290 | 17..1156 | 5685 | 99.9 | Plus |
l(3)neo38-RL | 2247 | CG6930-RL | 880..2015 | 21..1156 | 5665 | 99.9 | Plus |
l(3)neo38-RK | 1611 | CG6930-RK | 244..1379 | 21..1156 | 5665 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11769370..11770105 | 901..166 | 3665 | 99.9 | Minus |
3R | 32079331 | 3R | 11768843..11769002 | 1156..997 | 800 | 100 | Minus |
3R | 32079331 | 3R | 11771154..11771300 | 167..21 | 735 | 100 | Minus |
3R | 32079331 | 3R | 11769056..11769154 | 1000..902 | 495 | 100 | Minus |
3L | 28110227 | 3L | 11603938..11604196 | 802..1060 | 470 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:44:26 has no hits.
BO01486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:50 Download gff for
BO01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 1..1143 | 17..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:30 Download gff for
BO01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..1290 | 8..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:21 Download gff for
BO01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 158..1290 | 24..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:50 Download gff for
BO01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..1290 | 8..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:44 Download gff for
BO01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 158..1290 | 24..1158 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:44 Download gff for
BO01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11768840..11769000 | 999..1158 | 98 | <- | Minus |
3R | 11769058..11769154 | 902..998 | 100 | <- | Minus |
3R | 11769370..11770103 | 168..901 | 99 | <- | Minus |
3R | 11771154..11771297 | 24..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:21 Download gff for
BO01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7594562..7594722 | 999..1158 | 98 | <- | Minus |
arm_3R | 7594780..7594876 | 902..998 | 100 | <- | Minus |
arm_3R | 7595092..7595825 | 168..901 | 99 | <- | Minus |
arm_3R | 7596876..7597019 | 24..167 | 100 | | Minus |
BO01486.pep Sequence
Translation from 16 to 1174
> BO01486.pep
MFSAANNMQYGQNISIPYSQPQGDLNFLNAAAAADHKGKIHPKIERDREE
VLNQQILQNVNQSWQTLANTANTVDYSSHLLSATLPISIQHFLKYSETIK
KESTGDVLKNGTNLASLALGGVALTPSNNGANGGHHNGLVGMDHGGHMTN
MTDANGAALTNGASNGVNGNANGTVTNGGAGAVSSSGSVGTTNASGGTGT
ASGKKTKKKKPPKEKKPRPKPGEIRETKALDGSTLYCCPECQMAYPDRSL
IEQHVISHAVERRFVCDICNAALKRKDHLTRHKLSHIPDRPHVCNICMKS
FKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDHLRKHTRSHIARRVKSE
VSAQNVNGSAGGGGGGGGGNSAQSNALHGSASFLDH
BO01486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-PA | 380 | CG6930-PA | 1..380 | 1..380 | 2013 | 100 | Plus |
l(3)neo38-PK | 447 | CG6930-PK | 70..447 | 3..380 | 2002 | 100 | Plus |
l(3)neo38-PC | 447 | CG6930-PC | 70..447 | 3..380 | 2002 | 100 | Plus |
l(3)neo38-PB | 447 | CG6930-PB | 70..447 | 3..380 | 2002 | 100 | Plus |
l(3)neo38-PL | 455 | CG6930-PL | 70..447 | 3..380 | 2002 | 100 | Plus |