Clone Sequence Records
BO01488.3prime Sequence
845 bp (762 high quality bases) assembled on 2005-11-30
> BO01488.3prime
ATGGTCTAGAAAGCTTGCGTCGATCTCCACATTCTCGTCAACATCCTCCG
CCGCCGAGTGAACGCTCTCCGCTCCGCTCTCGACGCTCATCATCTGGCCA
TTGGGACTGGGACACGGCGTTCGCTGGGGACGCACTGCACCCGGGATGGG
GATGGGAACTGGCGATGAGGACGCCGAGGATGCAGTCACAAAGCTGGAAC
TCTGGGTTGGTGGCGGTATGGGTTGCGGCACCTTGTGTTGCGGGTAGAAG
TACGGGAATGGCATCTGCATCTGTGGCAGCGGAAGTCCGCCGTAGGCCAG
CTGCAGCTGATGGCGGTAGATGTTGATCAGGGCGGGATCGAGGCCGTGTC
CAGCACCGGGAGCAGCCATGTGAGCGTAGGTGGTGCTGCCATCCTCTCGC
ACCAAGACTTGGACGGGAACCCTCTTGCTGGCACCCAAAAGGGCGGCCTC
GTGCTGCTGGATCTGCTTGCGCTTGGTCTTGTAGCGGCGGTTTTGGAACC
AGATCTTCACCTGGGTCTCCGTCAGGCGCAGGCTCTTGGCCATCTCGCTG
CGTTCCGGACCGGACAAGTAGCGCTGTTGGGCAAAGCGGCGCTCCAACTC
GAAGACCTGGGCGTGGCTGAAGGCGGCACGCGACCGCTTCTTGCGGCTCA
ATCCACTGCCGTCGTGGGATAGCGGCGACTCCGAGGGGGAACTGCTCAAT
GGCGGTGGTGAGTCGCAGTCGGAATCGTTGCTGGTGCAGCGTCTCATGTC
CAAAGGAGCAGCGAGGGTGGATCCAAAATAGGCCAATTTGCGCTGCATGT
AGTCGGCGGCACTGGAGTTCGATGTGCCCCGTGCCTGGTGATGGT
BO01488.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7902-PA | 1149 | bap-RA | 320..1146 | 845..19 | 4085 | 99.7 | Minus |
CG1897-PA | 1548 | Dr-RA | 1372..1415 | 531..488 | 145 | 93.1 | Minus |
CG6172-PB | 1734 | vnd-RB | 1309..1367 | 528..470 | 145 | 89.8 | Minus |
CG6172-PA | 2172 | vnd-RA | 1747..1805 | 528..470 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1449 | CG7902-RA | 455..1281 | 845..19 | 4105 | 99.8 | Minus |
vnd-RB | 3412 | CG6172-RB | 2147..2205 | 528..470 | 205 | 89.8 | Minus |
vnd-RA | 3033 | CG6172-RA | 2100..2158 | 528..470 | 205 | 89.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21389580..21390281 | 720..19 | 3510 | 100 | Minus |
3R | 32079331 | 3R | 21389334..21389459 | 845..720 | 600 | 98.4 | Minus |
X | 23542271 | X | 596886..596944 | 528..470 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:40:50 has no hits.
BO01488.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:32 Download gff for
BO01488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-PA | 320..1149 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:05 Download gff for
BO01488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7902-PA | 320..1149 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:00 Download gff for
BO01488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 455..1287 | 11..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:57 Download gff for
BO01488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 455..1287 | 11..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:57 Download gff for
BO01488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21389334..21389459 | 720..845 | 98 | -> | Minus |
3R | 21389581..21390287 | 11..719 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:00 Download gff for
BO01488.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17215056..17215181 | 720..845 | 98 | -> | Minus |
arm_3R | 17215303..17216009 | 11..719 | 99 | | Minus |
BO01488.5prime Sequence
894 bp (765 high quality bases) assembled on 2005-11-30
> BO01488.5prime
GAAGTTATCAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTG
CGATGGCGGGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGAT
ATCCTAACGCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTC
CGAACCGGAACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGA
TCTCCAAGTCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTG
ACCCAACCCAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCT
GCAGTATTATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAA
CGGGCACATCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCC
TATTTTGGATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAG
CAACGATTCCGACTGCGACTCACCACCGCCATTGAGCAGTTCCCCCTCGG
AGTCGCCGCTATCCCACGACGGCAGTGGATTGAGCCGCAAGAAGCGGTCG
CGTGCCGCCTTCAGCCACGCCCAGGTCTTCGAGTTGGAGCGCCGCTTTGC
CCAACAGCGCTACTTGTCCGGTCCGGAACGCAGCGAGATGGCCAAGAGCC
TGCGCCTGACGGAGACCCAGGTGAAGATCTGGTTCCAAAACCGCCGCTAC
AAGACCAAGCGCAAGCAGATCCAGCAGCACGAGGCCGCCCTTTTGGGTGC
CAGCAAGAGGGTTCCCGTCCCAGTCTTGGTGCGAGAGGATGGCAGCACCA
CCTACGCTCACATGGCTGCTCCCGGTGCTGGACACGGCCTCGATCCCGCC
CTGATCCACATCTACCGCCATCAGCTGCAGCTGGCCTACGGCGG
BO01488.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7902-PA | 1149 | bap-RA | 1..878 | 17..894 | 4340 | 99.7 | Plus |
CG1897-PA | 1548 | Dr-RA | 1372..1415 | 650..693 | 145 | 93.1 | Plus |
CG6172-PB | 1734 | vnd-RB | 1309..1367 | 653..711 | 145 | 89.8 | Plus |
CG6172-PA | 2172 | vnd-RA | 1747..1805 | 653..711 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1449 | CG7902-RA | 136..1013 | 17..894 | 4360 | 99.8 | Plus |
vnd-RB | 3412 | CG6172-RB | 2147..2205 | 653..711 | 205 | 89.8 | Plus |
vnd-RA | 3033 | CG6172-RA | 2100..2158 | 653..711 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21389015..21389459 | 17..461 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 21389580..21390013 | 461..894 | 2140 | 99.5 | Plus |
X | 23542271 | X | 596886..596944 | 653..711 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:26:52 has no hits.
BO01488.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:33 Download gff for
BO01488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:06 Download gff for
BO01488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7902-PA | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:35:42 Download gff for
BO01488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..1013 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:36:44 Download gff for
BO01488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..1013 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:36:44 Download gff for
BO01488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21389015..21389459 | 17..461 | 100 | -> | Plus |
3R | 21389581..21390013 | 462..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:35:42 Download gff for
BO01488.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17214737..17215181 | 17..461 | 100 | -> | Plus |
arm_3R | 17215303..17215735 | 462..894 | 99 | | Plus |
BO01488.complete Sequence
1180 bp (1180 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629518
> BO01488.complete
GAAGTTATCAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTG
CGATGGCGGGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGAT
ATCCTAACGCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTC
CGAACCGGAACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGA
TCTCCAAGTCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTG
ACCCAACCCAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCT
GCAGTATTATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAA
CGGGCACATCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCC
TATTTTGGATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAG
CAACGATTCCGACTGCGACTCACCACCGCCATTGAGCAGTTCCCCCTCGG
AGTCGCCGCTATCCCACGACGGCAGTGGATTGAGCCGCAAGAAGCGGTCG
CGTGCCGCCTTCAGCCACGCCCAGGTCTTCGAGTTGGAGCGCCGCTTTGC
CCAACAGCGCTACTTGTCCGGTCCGGAACGCAGCGAGATGGCCAAGAGCC
TGCGCCTGACGGAGACCCAGGTGAAGATCTGGTTCCAAAACCGCCGCTAC
AAGACCAAGCGCAAGCAGATCCAGCAGCACGAGGCCGCCCTTTTGGGTGC
CAGCAAGAGGGTTCCCGTCCAAGTCTTGGTGCGAGAGGATGGCAGCACCA
CCTACGCTCACATGGCTGCTCCCGGTGCTGGACACGGCCTCGATCCCGCC
CTGATCAACATCTACCGCCATCAGCTGCAGCTGGCCTACGGCGGACTTCC
GCTGCCACAGATGCAGATGCCATTCCCGTACTTCTACCCGCAACACAAGG
TGCCGCAACCCATACCGCCACCAACCCAGAGTTCCAGCTTTGTGACTGCA
TCCTCGGCGTCCTCATCGCCAGTTCCCATCCCCATCCCGGGTGCAGTGCG
TCCCCAGCGAACGCCGTGTCCCAGTCCCAATGGCCAGATGATGAGCGTCG
AGAGCGGAGCGGAGAGCGTTCACTCGGCGGCGGAGGATGTTGACGAGAAT
GTGGAGATCGACGCAAGCTTTCTAGACCAT
BO01488.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1149 | CG7902-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
vnd-RB | 1734 | CG6172-PB | 1309..1367 | 653..711 | 205 | 89.8 | Plus |
vnd-RA | 2172 | CG6172-PA | 1747..1805 | 653..711 | 205 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-RA | 1449 | CG7902-RA | 136..1281 | 17..1162 | 5730 | 100 | Plus |
vnd-RB | 3412 | CG6172-RB | 2147..2205 | 653..711 | 205 | 89.8 | Plus |
vnd-RA | 3033 | CG6172-RA | 2100..2158 | 653..711 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21389580..21390281 | 461..1162 | 3510 | 100 | Plus |
3R | 32079331 | 3R | 21389015..21389459 | 17..461 | 2225 | 100 | Plus |
X | 23542271 | X | 596886..596944 | 653..711 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:08 has no hits.
BO01488.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:51 Download gff for
BO01488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 1..1149 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:31 Download gff for
BO01488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 133..1284 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:35 Download gff for
BO01488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..1281 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:51 Download gff for
BO01488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 133..1284 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:17 Download gff for
BO01488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bap-RA | 136..1281 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:17 Download gff for
BO01488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21389015..21389459 | 17..461 | 100 | -> | Plus |
3R | 21389581..21390281 | 462..1164 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:35 Download gff for
BO01488.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17214737..17215181 | 17..461 | 100 | -> | Plus |
arm_3R | 17215303..17216003 | 462..1164 | 99 | | Plus |
BO01488.pep Sequence
Translation from 16 to 1180
> BO01488.pep
MLNMESAGVSAAMAGLSKSLTTPFSINDILTRSNPETRRMSSVDSEPEPE
KLKPSSDRERSISKSPPLCCRDLGLYKLTQPKEIQPSARQPSNYLQYYAA
AMDNNNHHHQATGTSNSSAADYMQRKLAYFGSTLAAPLDMRRCTSNDSDC
DSPPPLSSSPSESPLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYL
SGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQHEAALLGASKRVP
VQVLVREDGSTTYAHMAAPGAGHGLDPALINIYRHQLQLAYGGLPLPQMQ
MPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPIPGAVRPQRTP
CPSPNGQMMSVESGAESVHSAAEDVDENVEIDASFLDH
BO01488.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bap-PA | 382 | CG7902-PA | 1..382 | 1..382 | 1985 | 100 | Plus |
Hmx-PD | 718 | CG43748-PD | 319..623 | 41..318 | 244 | 29.4 | Plus |
scro-PA | 468 | CG17594-PA | 113..358 | 21..274 | 239 | 30.8 | Plus |
Hmx-PE | 592 | CG43748-PE | 319..558 | 41..261 | 239 | 31.6 | Plus |
Hmx-PC | 592 | CG43748-PC | 319..558 | 41..261 | 239 | 31.6 | Plus |