Clone Sequence Records
BO01490.3prime Sequence
851 bp (703 high quality bases) assembled on 2005-11-30
> BO01490.3prime
ATGGTCTAGAAAGCTTGCCGCAATAGTGATGGTGCAGTTGGAGCTGGAGT
GCTTGTTCAGGAGCGACATCCTGGAGAAAGATTTGTGGCACACCTGGCAG
GCGTACTTCTTGACGTCCACGTGGGTCTGCTGATGAGCTCGCAGGTTCGA
GCGGTCGGCAAAGGATCGTGGGCAGTCGGGGCACTGGAAAGGCTTCTCTC
CAGTGTGGGTGCGGATGTGTCCCTGGAGCAGCCAGGGTCGAGAGAAGGCC
TTGCCGCAAATGGGGCACTTGCAGGGCAGAGTGTGGGTGCGGATGTGCAT
CTTCAGGGCTCCAATGGTGGTGTACAGCTTTCCACACTCCTCGCAGGAGT
GGGTCTTCTTCTCCTGATTACACTCGGCTGCCGGGCAGTGGAACTGACGG
TGCTTGGACAGGCCCATCGAGGTGGAGTACATCTTCTGGCACTCGTCGCA
CTTGAAGCGGTAGTTTTTGGCATGATTGGCGGCAACACTCGCCGACGAGG
CACTCATGGCCGGAGTGTAGGAGTATCCCGATGAGCTGCTTACACTGGCA
CCGCTGCTGCTGGACTTGGCCTCATCGAAAAGGTGGAACAGAGCCGGCAG
TGGGATGTCATTTCGCACTGAAAGATCCTCTGGCTCGGAACCGGTTTCCA
GATCGGATCCGGGGCTGGAGGGCGGCGTCATCTGCTGGTAGCTGTAGACC
GACTGGGGCGAGGCCATCGAGCTGGCTGGCGAGGGGAAGGCGGCCAGATG
GGGCTGATAGCTGCTCCACAGGGCAGAGATCGGATTTGCACCGGCGGCCA
TCACAAAGGCGGACTGGAAGGGATTAATCGTGGTGGGGGTGGGCGGTGGT
A
BO01490.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3956-PA | 1173 | sna-RA | 403..1170 | 786..19 | 3840 | 100 | Minus |
CG3956-PA | 1173 | sna-RA | 347..399 | 842..790 | 265 | 100 | Minus |
CG4158-PA | 1647 | wor-RA | 1180..1298 | 309..191 | 245 | 88.2 | Minus |
CG3758-PA | 1413 | esg-RA | 1123..1190 | 258..191 | 140 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sna-RA | 1668 | CG3956-RA | 492..1323 | 851..19 | 4095 | 99.6 | Minus |
esg-RA | 2273 | CG3758-RA | 1213..1512 | 396..97 | 555 | 79.4 | Minus |
wor-RA | 2222 | CG4158-RA | 1210..1452 | 429..187 | 405 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15476938..15477761 | 19..842 | 4075 | 99.6 | Plus |
2L | 23513712 | 2L | 15335078..15335377 | 396..97 | 555 | 79 | Minus |
2L | 23513712 | 2L | 15424067..15424309 | 187..429 | 405 | 77.8 | Plus |
3L | 28110227 | 3L | 584764..584884 | 181..301 | 215 | 78.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:18:23 has no hits.
BO01490.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:36 Download gff for
BO01490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-PA | 340..1173 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:10 Download gff for
BO01490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3956-PA | 340..1173 | 18..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:47 Download gff for
BO01490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 493..1330 | 11..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:51 Download gff for
BO01490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 493..1330 | 11..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:51 Download gff for
BO01490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15476931..15477768 | 11..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:47 Download gff for
BO01490.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15476931..15477768 | 11..850 | 99 | | Plus |
BO01490.5prime Sequence
748 bp (747 high quality bases) assembled on 2005-11-30
> BO01490.5prime
GAAGTTATCAGTCGACATGGCCGCCAACTACAAAAGCTGCCCGCTAAAGA
AGCGCCCCATTGTCTTCGTGGAGGAGCGTCTGCCACAAACGGAGGCCTTG
GCCCTGACCAAGGACTCACAGTTTGCCCAGGATCAGCCGCAGGATCTATC
CCTGAAACGGGGTCGCGACGAGGAGACCCAGGATTATCAGCAGCCGGAAC
CGAAACGTGACTATGTGCTGAACCTTTCAAAAACACCGGAAAGGAACTCC
AGCTCTAGCTCCAACTCCTGCCTGCTGTCGCCGCCAGTGGAGGCCCAGGA
TTACCTGCCCACCGAAATCCATATGCGTGGACTAACGGCAGGAACAACGG
GATATACCACCGCCACCCCCACCACGATTAATCCCTTCCAGTCCGCCTTT
GTGATGGCCGCCGGTTGCAATCCGATCTCTGCCCTGTGGAGCAGCTATCA
GCCCCATCTGGCCGCCTTCCCCTCGCCAGCCAGCTCGATGGCCTCGCCCC
AGTCGGTCTACAGCTACCAGCAGATGACGCCGCCCTCCAGCCCCGGATCC
GATCTGGAAACCGGTTCCGAGCCAGAGGATCTTTCAGTGCGAAATGACAT
CCCACTGCCGGCTCTGTTCCACCTTTTCGATGAGGCCAAGTCCAGCAGCA
GCGGTGCCAGTGTAAGCAGCTCATCGGGATACTCCTACACTCCGGCCATG
AGTGCCTCGTCGGCGAGTGTTGCCGCCAATCATGCCAAAAACTACCGC
BO01490.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3956-PA | 1173 | sna-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sna-RA | 1668 | CG3956-RA | 154..885 | 17..748 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15477376..15478107 | 748..17 | 3660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:18:34 has no hits.
BO01490.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:36 Download gff for
BO01490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:12 Download gff for
BO01490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3956-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:49 Download gff for
BO01490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 146..885 | 9..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:52 Download gff for
BO01490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 146..885 | 9..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:52 Download gff for
BO01490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15477376..15478115 | 9..748 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:49 Download gff for
BO01490.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15477376..15478115 | 9..748 | 99 | | Minus |
BO01490.complete Sequence
1204 bp (1204 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629519
> BO01490.complete
GAAGTTATCAGTCGACATGGCCGCCAACTACAAAAGCTGCCCGCTAAAGA
AGCGCCCCATTGTCTTCGTGGAGGAGCGTCTGCCACAAACGGAGGCCTTG
GCCCTGACCAAGGACTCACAGTTTGCCCAGGATCAGCCGCAGGATCTATC
CCTGAAACGGGGTCGCGACGAGGAGACCCAGGATTATCAGCAGCCGGAAC
CGAAACGTGACTATGTGCTGAACCTTTCAAAAACACCGGAAAGGAACTCC
AGCTCTAGCTCCAACTCCTGCCTGCTGTCGCCGCCAGTGGAGGCCCAGGA
TTACCTGCCCACCGAAATCCATATGCGTGGACTAACGGCAGGAACAACGG
GATATACCACCGCCACCCCCACCACGATTAATCCCTTCCAGTCCGCCTTT
GTGATGGCCGCCGGTTGCAATCCGATCTCTGCCCTGTGGAGCAGCTATCA
GCCCCATCTGGCCGCCTTCCCCTCGCCAGCCAGCTCGATGGCCTCGCCCC
AGTCGGTCTACAGCTACCAGCAGATGACGCCGCCCTCCAGCCCCGGATCC
GATCTGGAAACCGGTTCCGAGCCAGAGGATCTTTCAGTGCGAAATGACAT
CCCACTGCCGGCTCTGTTCCACCTTTTCGATGAGGCCAAGTCCAGCAGCA
GCGGTGCCAGTGTAAGCAGCTCATCGGGATACTCCTACACTCCGGCCATG
AGTGCCTCGTCGGCGAGTGTTGCCGCCAATCATGCCAAAAACTACCGCTT
CAAGTGCGACGAGTGCCAGAAGATGTACTCCACCTCGATGGGCCTGTCCA
AGCACCGTCAGTTCCACTGCCCGGCAGCCGAGTGTAATCAGGAGAAGAAG
ACCCACTCCTGCGAGGAGTGTGGAAAGCTGTACACCACCATTGGAGCCCT
GAAGATGCACATCCGCACCCACACTCTGCCCTGCAAGTGCCCCATTTGCG
GCAAGGCCTTCTCTCGACCCTGGCTGCTCCAGGGACACATCCGCACCCAC
ACTGGAGAGAAGCCTTTCCAGTGCCCCGACTGCCCACGATCCTTTGCCGA
CCGCTCGAACCTGCGAGCTCATCAGCAGACCCACGTGGACGTCAAGAAGT
ACGCCTGCCAGGTGTGCCACAAATCTTTCTCCAGGATGTCGCTCCTGAAC
AAGCACTCCAGCTCCAACTGCACCATCACTATTGCGGCAAGCTTTCTAGA
CCAT
BO01490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sna-RA | 1173 | CG3956-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
esg-RA | 1413 | CG3758-PA | 985..1284 | 809..1108 | 555 | 79 | Plus |
wor-RA | 1647 | CG4158-PA | 1060..1302 | 776..1018 | 405 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sna-RA | 1668 | CG3956-RA | 154..1323 | 17..1186 | 5850 | 100 | Plus |
esg-RA | 2273 | CG3758-RA | 1213..1512 | 809..1108 | 555 | 79 | Plus |
wor-RA | 2222 | CG4158-RA | 1210..1452 | 776..1018 | 405 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15476938..15478107 | 1186..17 | 5850 | 100 | Minus |
2L | 23513712 | 2L | 15335078..15335377 | 809..1108 | 555 | 79 | Plus |
2L | 23513712 | 2L | 15424067..15424309 | 1018..776 | 405 | 77.8 | Minus |
3L | 28110227 | 3L | 584764..584884 | 1024..904 | 215 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:05 has no hits.
BO01490.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:52 Download gff for
BO01490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 1..1173 | 17..1187 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:33 Download gff for
BO01490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 155..1339 | 9..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:29 Download gff for
BO01490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 154..1323 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:52 Download gff for
BO01490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 155..1339 | 9..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:04 Download gff for
BO01490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sna-RA | 154..1323 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:04 Download gff for
BO01490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15476936..15478107 | 17..1188 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:29 Download gff for
BO01490.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15476936..15478107 | 17..1188 | 99 | | Minus |
BO01490.pep Sequence
Translation from 16 to 1204
> BO01490.pep
MAANYKSCPLKKRPIVFVEERLPQTEALALTKDSQFAQDQPQDLSLKRGR
DEETQDYQQPEPKRDYVLNLSKTPERNSSSSSNSCLLSPPVEAQDYLPTE
IHMRGLTAGTTGYTTATPTTINPFQSAFVMAAGCNPISALWSSYQPHLAA
FPSPASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPAL
FHLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHAKNYRFKCDEC
QKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIR
THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLR
AHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNCTITIAASFLDH
BO01490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sna-PA | 390 | CG3956-PA | 1..390 | 1..390 | 2084 | 100 | Plus |
esg-PA | 470 | CG3758-PA | 231..449 | 153..385 | 653 | 55.4 | Plus |
wor-PA | 548 | CG4158-PA | 302..485 | 207..385 | 605 | 61.4 | Plus |
CG12605-PC | 474 | CG12605-PC | 256..430 | 209..385 | 433 | 48 | Plus |
CG12605-PE | 619 | CG12605-PE | 401..575 | 209..385 | 433 | 48 | Plus |