Clone BO01490 Report

Search the DGRC for BO01490

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:14
Well:90
Vector:pDNR-Dual
Associated Gene/Transcriptsna-RA
Protein status:BO01490.pep: full length peptide match
Sequenced Size:1204

Clone Sequence Records

BO01490.3prime Sequence

851 bp (703 high quality bases) assembled on 2005-11-30

> BO01490.3prime
ATGGTCTAGAAAGCTTGCCGCAATAGTGATGGTGCAGTTGGAGCTGGAGT
GCTTGTTCAGGAGCGACATCCTGGAGAAAGATTTGTGGCACACCTGGCAG
GCGTACTTCTTGACGTCCACGTGGGTCTGCTGATGAGCTCGCAGGTTCGA
GCGGTCGGCAAAGGATCGTGGGCAGTCGGGGCACTGGAAAGGCTTCTCTC
CAGTGTGGGTGCGGATGTGTCCCTGGAGCAGCCAGGGTCGAGAGAAGGCC
TTGCCGCAAATGGGGCACTTGCAGGGCAGAGTGTGGGTGCGGATGTGCAT
CTTCAGGGCTCCAATGGTGGTGTACAGCTTTCCACACTCCTCGCAGGAGT
GGGTCTTCTTCTCCTGATTACACTCGGCTGCCGGGCAGTGGAACTGACGG
TGCTTGGACAGGCCCATCGAGGTGGAGTACATCTTCTGGCACTCGTCGCA
CTTGAAGCGGTAGTTTTTGGCATGATTGGCGGCAACACTCGCCGACGAGG
CACTCATGGCCGGAGTGTAGGAGTATCCCGATGAGCTGCTTACACTGGCA
CCGCTGCTGCTGGACTTGGCCTCATCGAAAAGGTGGAACAGAGCCGGCAG
TGGGATGTCATTTCGCACTGAAAGATCCTCTGGCTCGGAACCGGTTTCCA
GATCGGATCCGGGGCTGGAGGGCGGCGTCATCTGCTGGTAGCTGTAGACC
GACTGGGGCGAGGCCATCGAGCTGGCTGGCGAGGGGAAGGCGGCCAGATG
GGGCTGATAGCTGCTCCACAGGGCAGAGATCGGATTTGCACCGGCGGCCA
TCACAAAGGCGGACTGGAAGGGATTAATCGTGGTGGGGGTGGGCGGTGGT
A

BO01490.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3956-PA 1173 sna-RA 403..1170 786..19 3840 100 Minus
CG3956-PA 1173 sna-RA 347..399 842..790 265 100 Minus
CG4158-PA 1647 wor-RA 1180..1298 309..191 245 88.2 Minus
CG3758-PA 1413 esg-RA 1123..1190 258..191 140 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
sna-RA 1668 CG3956-RA 492..1323 851..19 4095 99.6 Minus
esg-RA 2273 CG3758-RA 1213..1512 396..97 555 79.4 Minus
wor-RA 2222 CG4158-RA 1210..1452 429..187 405 77.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15476938..15477761 19..842 4075 99.6 Plus
2L 23513712 2L 15335078..15335377 396..97 555 79 Minus
2L 23513712 2L 15424067..15424309 187..429 405 77.8 Plus
3L 28110227 3L 584764..584884 181..301 215 78.5 Plus
Blast to na_te.dros performed on 2015-02-09 18:18:23 has no hits.

BO01490.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:36 Download gff for BO01490.3prime
Subject Subject Range Query Range Percent Splice Strand
sna-PA 340..1173 18..850 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:10 Download gff for BO01490.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3956-PA 340..1173 18..850 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:47 Download gff for BO01490.3prime
Subject Subject Range Query Range Percent Splice Strand
sna-RA 493..1330 11..850 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:51 Download gff for BO01490.3prime
Subject Subject Range Query Range Percent Splice Strand
sna-RA 493..1330 11..850 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:51 Download gff for BO01490.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15476931..15477768 11..850 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:47 Download gff for BO01490.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15476931..15477768 11..850 99   Plus

BO01490.5prime Sequence

748 bp (747 high quality bases) assembled on 2005-11-30

> BO01490.5prime
GAAGTTATCAGTCGACATGGCCGCCAACTACAAAAGCTGCCCGCTAAAGA
AGCGCCCCATTGTCTTCGTGGAGGAGCGTCTGCCACAAACGGAGGCCTTG
GCCCTGACCAAGGACTCACAGTTTGCCCAGGATCAGCCGCAGGATCTATC
CCTGAAACGGGGTCGCGACGAGGAGACCCAGGATTATCAGCAGCCGGAAC
CGAAACGTGACTATGTGCTGAACCTTTCAAAAACACCGGAAAGGAACTCC
AGCTCTAGCTCCAACTCCTGCCTGCTGTCGCCGCCAGTGGAGGCCCAGGA
TTACCTGCCCACCGAAATCCATATGCGTGGACTAACGGCAGGAACAACGG
GATATACCACCGCCACCCCCACCACGATTAATCCCTTCCAGTCCGCCTTT
GTGATGGCCGCCGGTTGCAATCCGATCTCTGCCCTGTGGAGCAGCTATCA
GCCCCATCTGGCCGCCTTCCCCTCGCCAGCCAGCTCGATGGCCTCGCCCC
AGTCGGTCTACAGCTACCAGCAGATGACGCCGCCCTCCAGCCCCGGATCC
GATCTGGAAACCGGTTCCGAGCCAGAGGATCTTTCAGTGCGAAATGACAT
CCCACTGCCGGCTCTGTTCCACCTTTTCGATGAGGCCAAGTCCAGCAGCA
GCGGTGCCAGTGTAAGCAGCTCATCGGGATACTCCTACACTCCGGCCATG
AGTGCCTCGTCGGCGAGTGTTGCCGCCAATCATGCCAAAAACTACCGC

BO01490.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3956-PA 1173 sna-RA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
sna-RA 1668 CG3956-RA 154..885 17..748 3660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15477376..15478107 748..17 3660 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:18:34 has no hits.

BO01490.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:36 Download gff for BO01490.5prime
Subject Subject Range Query Range Percent Splice Strand
sna-PA 1..732 17..748 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:12 Download gff for BO01490.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3956-PA 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:49 Download gff for BO01490.5prime
Subject Subject Range Query Range Percent Splice Strand
sna-RA 146..885 9..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:52 Download gff for BO01490.5prime
Subject Subject Range Query Range Percent Splice Strand
sna-RA 146..885 9..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:52 Download gff for BO01490.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15477376..15478115 9..748 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:49 Download gff for BO01490.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15477376..15478115 9..748 99   Minus

BO01490.complete Sequence

1204 bp (1204 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629519

> BO01490.complete
GAAGTTATCAGTCGACATGGCCGCCAACTACAAAAGCTGCCCGCTAAAGA
AGCGCCCCATTGTCTTCGTGGAGGAGCGTCTGCCACAAACGGAGGCCTTG
GCCCTGACCAAGGACTCACAGTTTGCCCAGGATCAGCCGCAGGATCTATC
CCTGAAACGGGGTCGCGACGAGGAGACCCAGGATTATCAGCAGCCGGAAC
CGAAACGTGACTATGTGCTGAACCTTTCAAAAACACCGGAAAGGAACTCC
AGCTCTAGCTCCAACTCCTGCCTGCTGTCGCCGCCAGTGGAGGCCCAGGA
TTACCTGCCCACCGAAATCCATATGCGTGGACTAACGGCAGGAACAACGG
GATATACCACCGCCACCCCCACCACGATTAATCCCTTCCAGTCCGCCTTT
GTGATGGCCGCCGGTTGCAATCCGATCTCTGCCCTGTGGAGCAGCTATCA
GCCCCATCTGGCCGCCTTCCCCTCGCCAGCCAGCTCGATGGCCTCGCCCC
AGTCGGTCTACAGCTACCAGCAGATGACGCCGCCCTCCAGCCCCGGATCC
GATCTGGAAACCGGTTCCGAGCCAGAGGATCTTTCAGTGCGAAATGACAT
CCCACTGCCGGCTCTGTTCCACCTTTTCGATGAGGCCAAGTCCAGCAGCA
GCGGTGCCAGTGTAAGCAGCTCATCGGGATACTCCTACACTCCGGCCATG
AGTGCCTCGTCGGCGAGTGTTGCCGCCAATCATGCCAAAAACTACCGCTT
CAAGTGCGACGAGTGCCAGAAGATGTACTCCACCTCGATGGGCCTGTCCA
AGCACCGTCAGTTCCACTGCCCGGCAGCCGAGTGTAATCAGGAGAAGAAG
ACCCACTCCTGCGAGGAGTGTGGAAAGCTGTACACCACCATTGGAGCCCT
GAAGATGCACATCCGCACCCACACTCTGCCCTGCAAGTGCCCCATTTGCG
GCAAGGCCTTCTCTCGACCCTGGCTGCTCCAGGGACACATCCGCACCCAC
ACTGGAGAGAAGCCTTTCCAGTGCCCCGACTGCCCACGATCCTTTGCCGA
CCGCTCGAACCTGCGAGCTCATCAGCAGACCCACGTGGACGTCAAGAAGT
ACGCCTGCCAGGTGTGCCACAAATCTTTCTCCAGGATGTCGCTCCTGAAC
AAGCACTCCAGCTCCAACTGCACCATCACTATTGCGGCAAGCTTTCTAGA
CCAT

BO01490.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
sna-RA 1173 CG3956-PA 1..1170 17..1186 5850 100 Plus
esg-RA 1413 CG3758-PA 985..1284 809..1108 555 79 Plus
wor-RA 1647 CG4158-PA 1060..1302 776..1018 405 77.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
sna-RA 1668 CG3956-RA 154..1323 17..1186 5850 100 Plus
esg-RA 2273 CG3758-RA 1213..1512 809..1108 555 79 Plus
wor-RA 2222 CG4158-RA 1210..1452 776..1018 405 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15476938..15478107 1186..17 5850 100 Minus
2L 23513712 2L 15335078..15335377 809..1108 555 79 Plus
2L 23513712 2L 15424067..15424309 1018..776 405 77.8 Minus
3L 28110227 3L 584764..584884 1024..904 215 78.5 Minus
Blast to na_te.dros performed on 2014-11-27 08:27:05 has no hits.

BO01490.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:52 Download gff for BO01490.complete
Subject Subject Range Query Range Percent Splice Strand
sna-RA 1..1173 17..1187 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:33 Download gff for BO01490.complete
Subject Subject Range Query Range Percent Splice Strand
sna-RA 155..1339 9..1194 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:29 Download gff for BO01490.complete
Subject Subject Range Query Range Percent Splice Strand
sna-RA 154..1323 17..1188 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:52 Download gff for BO01490.complete
Subject Subject Range Query Range Percent Splice Strand
sna-RA 155..1339 9..1194 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:04 Download gff for BO01490.complete
Subject Subject Range Query Range Percent Splice Strand
sna-RA 154..1323 17..1188 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:04 Download gff for BO01490.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15476936..15478107 17..1188 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:29 Download gff for BO01490.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15476936..15478107 17..1188 99   Minus

BO01490.pep Sequence

Translation from 16 to 1204

> BO01490.pep
MAANYKSCPLKKRPIVFVEERLPQTEALALTKDSQFAQDQPQDLSLKRGR
DEETQDYQQPEPKRDYVLNLSKTPERNSSSSSNSCLLSPPVEAQDYLPTE
IHMRGLTAGTTGYTTATPTTINPFQSAFVMAAGCNPISALWSSYQPHLAA
FPSPASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPAL
FHLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHAKNYRFKCDEC
QKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIR
THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLR
AHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNCTITIAASFLDH

BO01490.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
sna-PA 390 CG3956-PA 1..390 1..390 2084 100 Plus
esg-PA 470 CG3758-PA 231..449 153..385 653 55.4 Plus
wor-PA 548 CG4158-PA 302..485 207..385 605 61.4 Plus
CG12605-PC 474 CG12605-PC 256..430 209..385 433 48 Plus
CG12605-PE 619 CG12605-PE 401..575 209..385 433 48 Plus