Clone Sequence Records
BO01492.3prime Sequence
834 bp (800 high quality bases) assembled on 2005-11-30
> BO01492.3prime
ATGGTCTAGAAAGCTTGCCAAATCTTTGGATGCCTTGGACACCAGCTTTG
GCAGCTGCAGCATAAGTCCCATGTGCTGTAGTGGATTCGCCGAGGAGAGA
CTCGAGGTAGTGGATAGCGTTCCATTGACATTCTCCCTGGGATGCGGCTG
CGCTGGGTGGGTTGATGAGGCTGACTGCTCGGAATGGAATATCTCGCCAA
GCAGGTCGTACACACGTCGCTTGAAGTACAGCTTCTGGTGGAAGTTCATG
TGCTTGATTTCGGGACGCAGTCCCTGCAGGAATGCGTCATCGAAATCCAT
GATTGGCAATGCTTCAATACAGCGGGTTGATGTCTTGGCCTCCTTCTCAC
TGCTGTCGCTCTCTGTGCGCATTTCTGCCGGGACCGTGTCCTCGAAATCC
ATGATTGATGATGGTTCATTATTAAATTGTGTTGCCTCAACGTCCGTCGC
CGATGCAGGGTCGGTGCTGTGACGGCTCTGCGCATGCTCCGAATTCAGAA
AGCTCGGGGAGTGCACCATCTCGAGGATTGCCTCTACGGGAGTTTCGGGA
TCCCCTTCGTCGTGCTCCTCCTGTCCCTTGGGTCTTGACCTACGACCTCT
GAGCGGAACGGGCACTCCGGGAGTGATGTGCTTTTGCAGGAACTTCAGCT
CGCTGTTAAGATAGTACGTATTCGCACCGTGATGCAACTTTATTGAGCGG
GCATAGCTGGAGCGAATGTTGCGCCAACGTTCCTTGCAGCTTTTAACCGA
ATTTCGCATCTCATTGGATATTTCCTTCCACGCATTTTTCACAGTCGATT
TCCNGCAGTAGTTGTCATCGTGACGATCGTAAAG
BO01492.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-PA | 1179 | CG3919-RA | 392..1176 | 803..19 | 3925 | 100 | Minus |
CG3919-PA | 1179 | CG3919-RA | 361..388 | 834..807 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 381..1196 | 834..19 | 4035 | 99.8 | Minus |
CG3919-RC | 1406 | CG3919-RC | 381..881 | 834..334 | 2460 | 99.6 | Minus |
CG3919-RC | 1406 | CG3919-RC | 925..1244 | 338..19 | 1585 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14412254..14412570 | 335..19 | 1585 | 100 | Minus |
3L | 28110227 | 3L | 14411495..14411811 | 751..435 | 1570 | 99.7 | Minus |
3L | 28110227 | 3L | 14412033..14412136 | 437..334 | 520 | 100 | Minus |
3L | 28110227 | 3L | 14411185..14411272 | 834..747 | 399 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:51:09 has no hits.
BO01492.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:39 Download gff for
BO01492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 361..1179 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:16 Download gff for
BO01492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 361..1179 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:27 Download gff for
BO01492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 381..1202 | 11..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:26 Download gff for
BO01492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 381..1202 | 11..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:26 Download gff for
BO01492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14411185..14411272 | 747..834 | 97 | -> | Minus |
3L | 14411500..14411810 | 436..746 | 100 | -> | Minus |
3L | 14412035..14412136 | 334..435 | 100 | -> | Minus |
3L | 14412256..14412576 | 11..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:27 Download gff for
BO01492.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14404285..14404372 | 747..834 | 97 | -> | Minus |
arm_3L | 14404600..14404910 | 436..746 | 100 | -> | Minus |
arm_3L | 14405135..14405236 | 334..435 | 100 | -> | Minus |
arm_3L | 14405356..14405676 | 11..333 | 99 | | Minus |
BO01492.5prime Sequence
868 bp (730 high quality bases) assembled on 2005-11-30
> BO01492.5prime
GAAGTTATCAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGA
AATTGCAACATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAA
TCGCAGTGTTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGT
CCACGCCAACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCG
AACTTAATAAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGG
AGCATTTTTAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCG
TCGGTCCATAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATAT
GTCATTTGGTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAAC
TACTTGCGGAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGA
GATGCGAAATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCT
CCAGCTATGCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTAT
CTTAACAGCGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCC
CGTTCCGCTCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACG
ACGAAGGGGATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCAC
TCCCCGAGCTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGA
CCCTGCATCGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCAT
CATCAATCATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAG
AGCGACAGCAGTGAGAAG
BO01492.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-PA | 1179 | CG3919-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RC | 1406 | CG3919-RC | 20..872 | 16..868 | 4265 | 100 | Plus |
CG3919-RB | 1358 | CG3919-RB | 20..872 | 16..868 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14411495..14411811 | 460..776 | 1570 | 99.7 | Plus |
3L | 28110227 | 3L | 14410645..14410901 | 16..272 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14411081..14411272 | 273..464 | 960 | 100 | Plus |
3L | 28110227 | 3L | 14412033..14412127 | 774..868 | 475 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6822..6909 | 17..99 | 131 | 66.3 | Plus |
BO01492.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:40 Download gff for
BO01492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:17 Download gff for
BO01492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:03 Download gff for
BO01492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..872 | 10..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:04 Download gff for
BO01492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..872 | 10..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:04 Download gff for
BO01492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14411500..14411810 | 465..775 | 100 | -> | Plus |
3L | 14412035..14412127 | 776..868 | 100 | | Plus |
3L | 14410639..14410901 | 10..272 | 98 | -> | Plus |
3L | 14411081..14411272 | 273..464 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:03 Download gff for
BO01492.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14404181..14404372 | 273..464 | 100 | -> | Plus |
arm_3L | 14403739..14404001 | 10..272 | 98 | -> | Plus |
arm_3L | 14404600..14404910 | 465..775 | 100 | -> | Plus |
arm_3L | 14405135..14405227 | 776..868 | 100 | | Plus |
BO01492.complete Sequence
1210 bp (1210 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629520
> BO01492.complete
GAAGTTATCAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGA
AATTGCAACATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAA
TCGCAGTGTTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGT
CCACGCCAACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCG
AACTTAATAAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGG
AGCATTTTTAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCG
TCGGTCCATAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATAT
GTCATTTGGTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAAC
TACTTGCGGAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGA
GATGCGAAATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCT
CCAGCTATGCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTAT
CTTAACAGCGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCC
CGTTCCGCTCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACG
ACGAAGGGGATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCAC
TCCCCGAGCTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGA
CCCTGCATCGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCAT
CATCAATCATGGATTTCGAGGACACGGTCCCGGCAGAAATGCGCACAGAG
AGCGACAGCAGTGAGAAGGAGGCCAAGACATCAACCCGCTGTATTGAAGC
ATTGCCAATCATGGATTTCGATGACGCATTCCTGCAGGGACTGCGTCCCG
AAATCAAGCACATGAACTTCCACCAGAAGCTGTACTTCAAGCGACGTGTG
TACGACCTGCTTGGCGAGATATTCCATTCCGAGCAGTCAGCCTCATCAAC
CCACCCAGCGCAGCCGCATCCCAGGGAGAATGTCAATGGAACGCTATCCA
CTACCTCGAGTCTCTCCTCGGCGAATCCACTACAGCACATGGGACTTATG
CTGCAGCTGCCAAAGCTGGTGTCCAAGGCATCCAAAGATTTGGCAAGCTT
TCTAGACCAT
BO01492.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 909 | CG3919-PB | 1..906 | 287..1192 | 4530 | 100 | Plus |
CG3919-RC | 957 | CG3919-PC | 1..591 | 287..877 | 2955 | 100 | Plus |
CG3919-RC | 957 | CG3919-PC | 635..954 | 873..1192 | 1585 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 20..1196 | 16..1192 | 5885 | 100 | Plus |
CG3919-RC | 1406 | CG3919-RC | 20..881 | 16..877 | 4310 | 100 | Plus |
CG3919-RC | 1406 | CG3919-RC | 925..1244 | 873..1192 | 1585 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14412254..14412570 | 876..1192 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 14411495..14411811 | 460..776 | 1570 | 99.7 | Plus |
3L | 28110227 | 3L | 14410645..14410901 | 16..272 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14411081..14411272 | 273..464 | 960 | 100 | Plus |
3L | 28110227 | 3L | 14412033..14412136 | 774..877 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 02:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6822..6909 | 17..99 | 131 | 66.3 | Plus |
BO01492.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:53 Download gff for
BO01492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 1..909 | 287..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:34 Download gff for
BO01492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..1202 | 10..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:57 Download gff for
BO01492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 21..1196 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:53 Download gff for
BO01492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 14..1202 | 10..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:52 Download gff for
BO01492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 21..1196 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:52 Download gff for
BO01492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14412256..14412570 | 878..1194 | 99 | | Plus |
3L | 14411500..14411810 | 465..775 | 100 | -> | Plus |
3L | 14412035..14412136 | 776..877 | 100 | -> | Plus |
3L | 14410646..14410901 | 17..272 | 100 | -> | Plus |
3L | 14411081..14411272 | 273..464 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:57 Download gff for
BO01492.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14403746..14404001 | 17..272 | 100 | -> | Plus |
arm_3L | 14404181..14404372 | 273..464 | 100 | -> | Plus |
arm_3L | 14404600..14404910 | 465..775 | 100 | -> | Plus |
arm_3L | 14405135..14405236 | 776..877 | 100 | -> | Plus |
arm_3L | 14405356..14405670 | 878..1194 | 99 | | Plus |
BO01492.pep Sequence
Translation from 16 to 1210
> BO01492.pep
MCFKIKNNCYLKLQHSFTTASLVGSSTKSQCSKLLNTCNSSNSGVHANNC
RVHGSNERLEPELNKPKLVIKALTSINWSIFKPNSLFIYEMNTRRRSIAP
PPNVYAINAKICHLVKLHPCLYDRHDDNYLRKSTVKNAWKEISNEMRNSV
KSCKERWRNIRSSYARSIKLHHGANTYYLNSELKFLQKHITPGVPVPLRG
RRSRPKGQEEHDEGDPETPVEAILEMVHSPSFLNSEHAQSRHSTDPASAT
DVEATQFNNEPSSIMDFEDTVPAEMRTESDSSEKEAKTSTRCIEALPIMD
FDDAFLQGLRPEIKHMNFHQKLYFKRRVYDLLGEIFHSEQSASSTHPAQP
HPRENVNGTLSTTSSLSSANPLQHMGLMLQLPKLVSKASKDLASFLDH
BO01492.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-PB | 302 | CG3919-PB | 1..302 | 91..392 | 1591 | 100 | Plus |
CG3919-PC | 318 | CG3919-PC | 1..318 | 91..392 | 1564 | 95 | Plus |
CG4404-PA | 308 | CG4404-PA | 15..98 | 108..186 | 178 | 38.1 | Plus |
CG3838-PB | 435 | CG3838-PB | 58..140 | 108..186 | 165 | 41 | Plus |
CG3838-PA | 435 | CG3838-PA | 58..140 | 108..186 | 165 | 41 | Plus |