Clone Sequence Records
BO01503.3prime Sequence
828 bp (748 high quality bases) assembled on 2005-11-30
> BO01503.3prime
ATGGTCTAGAAAGCTTGCCACCTGCGGGGCGAAGTTTTTGTAGCTGTGTT
GATGTGGAACGGGATGCACGTGTGCCTGATCCTCCGGATAGTCCTTCCAT
GGCGGTGTTTGCGAGTAGAAGCTGCTCTGCTGGTGAATCCCAGAATCCAA
GTTCGTAGAATGAAGATTGGCAGCTGCATCGAAGGATCCCCTGAACAGAT
CGTATTTCTCCTGCGAGAACTGCTGCGGGCTGGACTCCTGCTGGGGATTA
GGCTGCAGATGGTGAGGCTGATGCGGCTGCTGTTGCTGTTGGTGGTAAAA
CCGCATGCTGCCTGTAAAGTCGAATCCTGGTGGCTGCTGCGGATAGTCCA
TGCCGTGCTGAAAGCCACCCATCGCCGGCGGCTGCTCCGCGTGCGATGCT
GGAGCAGTCTGGTGCTGTGCAAGAGGCGCCATTCCCTGTCCATAGGGGAA
CATTCGTCCGAACAAGGGATACGGCTGTGGATTCACGAAAAGAGCATCGA
AGAGCTCCTTGGTAATCCTCTCACCACTCAGCGTGAAGTTCTGCAGCTTC
TCCAGATCCAGGTTGATTGAACCTCCGCTTTCCAGCACCTGCTCCAGGGC
AAAGATGTAGTTGTGCGCAAATCGCAGAATCTCGATCTTCGTCAGCTTCG
TCTCCTCGGGAAGCGAGGGCAGAGTGACGCGTAGTTTCTCCAGGGCATCA
TTCAAGTTATGCATCCGATTCCGCTCCCGGTCATTGGCCTTCATGCGGCG
GAAACGCTTGATCTTCACCACTTGGGTTGGACTGCGCGAGCGAGTTACTC
TGTTCTTGCCGACGGCATATTTGCGTTT
BO01503.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7659-PA | 1197 | tap-RA | 385..1194 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-RA | 2130 | CG7659-RA | 496..1305 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17360177..17360986 | 828..19 | 4050 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6835 | 325..196 | 162 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6856 | 296..235 | 148 | 71 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2380 | 355..236 | 146 | 61.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6819 | 296..236 | 143 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2431 | 381..239 | 138 | 56.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2422 | 296..203 | 136 | 61.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6864 | 351..200 | 131 | 59.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1146 | 296..239 | 128 | 69 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 966..1029 | 300..235 | 127 | 70.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6843 | 296..203 | 120 | 61.7 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7928..7994 | 318..252 | 119 | 64.2 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9372..9438 | 318..252 | 119 | 64.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1145 | 346..252 | 118 | 63.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6857 | 296..252 | 117 | 73.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2389 | 286..203 | 114 | 62.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2414 | 296..235 | 112 | 64.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1122..1163 | 296..255 | 111 | 73.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2465 | 360..220 | 110 | 59.7 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3265..3336 | 312..240 | 110 | 63 | Minus |
BO01503.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:50 Download gff for
BO01503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-PA | 385..1197 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:35 Download gff for
BO01503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7659-PA | 385..1197 | 18..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:55 Download gff for
BO01503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 496..1316 | 10..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:59:51 Download gff for
BO01503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 496..1316 | 10..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:59:51 Download gff for
BO01503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17360177..17360997 | 10..828 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:55 Download gff for
BO01503.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17353277..17354097 | 10..828 | 99 | | Minus |
BO01503.5prime Sequence
940 bp (762 high quality bases) assembled on 2005-11-30
> BO01503.5prime
GAAGTTATCAGTCGACATGGCCGCCTGCTACAATGCCTATAGCGCTGGAT
CACAGTCCTTCGAGTTCGACGAGGACGACGACGACGCCTCCTTCGACAGT
GGCTACGAGAAGAGTTTCGAGACGGAGGCCCAGTTGAGCTCACGACGCCG
CTTGGACTTTGGCACTCCGCCGACTCCGGCGATCCCGCAACCGTACTCCG
GCGGCACCTGGGACGCCGTACCGCTCAGCTCACCGCCGGCGGGCTTCGTG
GGATTGCTCGATACGAGCAGCAATCACAGCACTCGGAGCGGCAGGACACT
GGTCGAACATCTGAACAGTCGGGCCACGAATGGCGTCTTCGATCCGCCAT
TGACCAGTACGCCGGTGAAGTCGCCAGAGGATCCCAATGCGCCGCGACCG
AAACGCAAATATGCCGTCGGCAAGAACAGAGTAACTCGCTCGCGCAGTCC
AACCCAAGTGGTGAAGATCAAGCGTTTCCGCCGCATGAAGGCCAATGACC
GGGAGCGGAATCGGATGCATAACTTGAATGATGCCCTGGAGAAACTACGC
GTCACTCTGCCCTCGCTTCCCGAGGAGACGAAGCTGACGAAGATCGAGAT
TCTGCGATTTGCGCACAACTACATCTTTGCCCTGGAGCAGGTGCTGGAAA
GCGGAGGTTCAATCAACCTGGATCTGGAGAAGCTGCAGAACTTCACGCTG
AGTGGTGAGAGGATTACCAAGGAGCTCTTCGATGCTCTTTTCGTGAATCC
ACAGCCGTATCCCTTGGTCGGACGAATGTTCCCCTATGGACAGGGAATGG
CGCCTCTTGCACAGCACCAGACTGCTCCAGCATCGCACGCGGAGCAGCCG
CCGGCGATGGGTGGCTTTCAGCACGGCATGGACTATCGGCAGCAGCCACC
AGGATTCGACTTTACAGGCAGCATGCGGTTTTACCACCAA
BO01503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7659-PA | 1197 | tap-RA | 1..924 | 17..940 | 4570 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-RA | 2130 | CG7659-RA | 111..1035 | 16..940 | 4595 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17359792..17360716 | 16..940 | 4595 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:06:52 has no hits.
BO01503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:51 Download gff for
BO01503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:36 Download gff for
BO01503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7659-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:33 Download gff for
BO01503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 111..1033 | 16..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:09 Download gff for
BO01503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 111..1033 | 16..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:09 Download gff for
BO01503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17359792..17360714 | 16..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:33 Download gff for
BO01503.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17352892..17353814 | 16..938 | 99 | | Plus |
BO01503.complete Sequence
1228 bp (1228 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629523
> BO01503.complete
GAAGTTATCAGTCGACATGGCCGCCTGCTACAATGCCTATAGCGCTGGAT
CACAGTCCTTCGAGTTCGACGAGGACGACGACGACGCCTCCTTCGACAGT
GGCTACGAGAAGAGTTTCGAGACGGAGGCCCAGTTGAGCTCACGACGCCG
CTTGGACTTTGGCACTCCGCCGACTCCGGCGATCCCGCAACCGTACTCCG
GCGGCACCTGGGACGCCGTACCGCTCAGCTCACCGCCGGCGGGCTTCGTG
GGATTGCTCGATACGAGCAGCAATCACAGCACTCGGAGCGGCAGGACACT
GGTCGAACATCTGAACAGTCGGGCCACGAATGGCGTCTTCGATCCGCCAT
TGACCAGTACGCCGGTGAAGTCGCCAGAGGATCCCAATGCGCCGCGACCG
AAACGCAAATATGCCGTCGGCAAGAACAGAGTAACTCGCTCGCGCAGTCC
AACCCAAGTGGTGAAGATCAAGCGTTTCCGCCGCATGAAGGCCAATGACC
GGGAGCGGAATCGGATGCATAACTTGAATGATGCCCTGGAGAAACTACGC
GTCACTCTGCCCTCGCTTCCCGAGGAGACGAAGCTGACGAAGATCGAGAT
TCTGCGATTTGCGCACAACTACATCTTTGCCCTGGAGCAGGTGCTGGAAA
GCGGAGGTTCAATCAACCTGGATCTGGAGAAGCTGCAGAACTTCACGCTG
AGTGGTGAGAGGATTACCAAGGAGCTCTTCGATGCTCTTTTCGTGAATCC
ACAGCCGTATCCCTTGTTCGGACGAATGTTCCCCTATGGACAGGGAATGG
CGCCTCTTGCACAGCACCAGACTGCTCCAGCATCGCACGCGGAGCAGCCG
CCGGCGATGGGTGGCTTTCAGCACGGCATGGACTATCCGCAGCAGCCACC
AGGATTCGACTTTACAGGCAGCATGCGGTTTTACCACCAACAGCAACAGC
AGCCGCATCAGCCTCACCATCTGCAGCCTAATCCCCAGCAGGAGTCCAGC
CCGCAGCAGTTCTCGCAGGAGAAATACGATCTGTTCAGGGGATCCTTCGA
TGCAGCTGCCAATCTTCATTCTACGAACTTGGATTCTGGGATTCACCAGC
AGAGCAGCTTCTACTCGCAAACACCGCCATGGAAGGACTATCCGGAGGAT
CAGGCACACGTGCATCCCGTTCCACATCAACACAGCTACAAAAACTTCGC
CCCGCAGGTGGCAAGCTTTCTAGACCAT
BO01503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-RA | 1197 | CG7659-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-RA | 2130 | CG7659-RA | 111..1305 | 16..1210 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17359792..17360986 | 16..1210 | 5975 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6835 | 904..1033 | 162 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6856 | 933..994 | 148 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2380 | 874..993 | 146 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6819 | 933..993 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2431 | 848..990 | 138 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2422 | 933..1026 | 136 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6864 | 878..1029 | 131 | 59.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1146 | 933..990 | 128 | 69 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 966..1029 | 929..994 | 127 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6843 | 933..1026 | 120 | 61.7 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7928..7994 | 911..977 | 119 | 64.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9372..9438 | 911..977 | 119 | 64.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1145 | 883..977 | 118 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6857 | 933..977 | 117 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2389 | 943..1026 | 114 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2414 | 933..994 | 112 | 64.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1122..1163 | 933..974 | 111 | 73.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2465 | 869..1009 | 110 | 59.7 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3265..3336 | 917..989 | 110 | 63 | Plus |
BO01503.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:42 Download gff for
BO01503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 1..1197 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:22 Download gff for
BO01503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 143..1348 | 16..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:30 Download gff for
BO01503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 112..1305 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:43 Download gff for
BO01503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 143..1348 | 16..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:13 Download gff for
BO01503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tap-RA | 112..1305 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:13 Download gff for
BO01503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17359793..17360986 | 17..1212 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:30 Download gff for
BO01503.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17352893..17354086 | 17..1212 | 99 | | Plus |
BO01503.pep Sequence
Translation from 16 to 1228
> BO01503.pep
MAACYNAYSAGSQSFEFDEDDDDASFDSGYEKSFETEAQLSSRRRLDFGT
PPTPAIPQPYSGGTWDAVPLSSPPAGFVGLLDTSSNHSTRSGRTLVEHLN
SRATNGVFDPPLTSTPVKSPEDPNAPRPKRKYAVGKNRVTRSRSPTQVVK
IKRFRRMKANDRERNRMHNLNDALEKLRVTLPSLPEETKLTKIEILRFAH
NYIFALEQVLESGGSINLDLEKLQNFTLSGERITKELFDALFVNPQPYPL
FGRMFPYGQGMAPLAQHQTAPASHAEQPPAMGGFQHGMDYPQQPPGFDFT
GSMRFYHQQQQQPHQPHHLQPNPQQESSPQQFSQEKYDLFRGSFDAAANL
HSTNLDSGIHQQSSFYSQTPPWKDYPEDQAHVHPVPHQHSYKNFAPQVAS
FLDH
BO01503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tap-PA | 398 | CG7659-PA | 1..398 | 1..398 | 2136 | 100 | Plus |
dimm-PB | 390 | CG8667-PB | 108..214 | 91..212 | 156 | 36.9 | Plus |
dimm-PA | 390 | CG8667-PA | 108..214 | 91..212 | 156 | 36.9 | Plus |