Clone Sequence Records
BO01505.3prime Sequence
884 bp (791 high quality bases) assembled on 2005-11-30
> BO01505.3prime
ATGGTCTAGAAAGCTTGCCAATTCGTCGTGTTCGCTTTGATCTTTGTCTT
GCTTAGATTCATCATCCTTCTCCTCATCGTCATCATCCTCGTCCTCATCG
TCCTTGTCGGAAGCCTTTTTCGCCTCCTCCTCGTCCTTCTTGCGCTGCAC
CTCATCCTGGGCCTCCTTCATTTTCTTCTCGCCCGCCTGGGTGTTCTTGA
CTTCGGCAGCAGCCTTAGCGGCCAGCTCCACGTCGTCCGTGATCAGGACG
TTGTCGAAGATAGTGCCGGACTTGACCTGCCAGAGATCGAAGCCCAGGGT
GCAGATCTCCTTGCGCAGATACAGCTTGTCGTCGGGCACATACTCGGGAT
TGGCGATCTCGGGATGCTCCCAGGCGCCCTTGTAGTTGGGGTTGTCCAGC
TGCTTTGGCTGCCACTCGCCCTTGAACTCAGGGTTGTCGATCATCGGTGG
CTCCCACTCGCCGTCCATCTCATCGTCCCAATCCTCAGGCTTTGTGGCAT
CTGGGTCGGGAATGTGCTCTGGTTTGTCCCAGTCCTCGGGCTTCTTGTCA
TCGGGATCGGGAATGGTGGCCCTATCGTCCCAGTCTTCGGGCTTGGTGGC
GGTGGGATCCTTGATCTTCTTGGGGGCCAGGAAGTCCCAGTCGTCCTCCA
GGTTGCCAGACTCCACCTTCTCGTTGTCGATGAGCACCTCGTACGTGTTG
TCGGGTCTGACAATCAGCGTGTAGAAGTGGGTGTACACGTCATCTTTGCA
GCGGATGTCTTTGCTGATTAGGTGGTTCTTGCCCTTGTAGCTGAAGATCA
CATGGACCTTCTTGGTGCCGGGTCCGCAGATGTCCGGGCCGAACATGATC
TCGTACGGCGACTCGCCGTGCATGTCGGTCTGGT
BO01505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9429-PA | 1221 | Crc-RA | 353..1218 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crc-RB | 1677 | CG9429-RB | 439..1304 | 884..19 | 4330 | 100 | Minus |
Crc-RA | 1430 | CG9429-RA | 439..1304 | 884..19 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9629064..9629616 | 19..571 | 2765 | 100 | Plus |
3R | 32079331 | 3R | 9629707..9630021 | 570..884 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:24:38 has no hits.
BO01505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:52 Download gff for
BO01505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-PA | 353..1221 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:37 Download gff for
BO01505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9429-PA | 353..1221 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:56 Download gff for
BO01505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 439..1308 | 14..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:00:54 Download gff for
BO01505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 439..1308 | 14..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:00:54 Download gff for
BO01505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9629060..9629615 | 14..570 | 99 | <- | Plus |
3R | 9629708..9630021 | 571..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:56 Download gff for
BO01505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5454782..5455337 | 14..570 | 99 | <- | Plus |
arm_3R | 5455430..5455743 | 571..884 | 100 | | Plus |
BO01505.5prime Sequence
630 bp (488 high quality bases) assembled on 2005-11-30
> BO01505.5prime
GAAGTTATCAGTCGACATGATGTGGTGCAAAACAGTGATAGTGTTGCTGG
CGACAGTCGGCTTTATTAGTGCCGAGGTTTATCTGAAGGAGAATTTCGAC
AACGAAAACTGGGAGGATACGTGGATCTACAGCAAACATCCTGGCAAGGA
GTTCGGAAAATTCGTCCTCACCCCCGGTACCTTCTACAACGATGCTGAGG
CCGACAAAGGCATTCAGACCTCTCAGGATGCTCGATTCTACGCGGCCAGC
CGCAAGTTTGATGGCTTCTCCAACGAGGACAAGCCCCTCGTGGTGCAGTT
CTCCGTGAAGCACGAGCAGAATATCGACTGCGGCGGCGGCTATGTGAAGC
TGTTCGACTGCTCCCTCGACCAGACCGACATGCACGGCGAGTCGCCGTAC
GAGATCATGTTCGGCCCGGACATCTGCGGACCCGGCACCAAGAAGGTCCA
TGTGATCTTCAGCTACAAGGGCAAGAACCACCTAATCAGCAAAGACATCC
GCTGCAAAGATGACGTGTACACCCACTTCTACACGCTGATTGTCAGACCC
GACAACACGTACGAGGTGCTCATCGACAACGAGAAGGTGGAGTCTGGGCA
CCTGGAGGACGACTGGGACTTCCTGGCCCC
BO01505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9429-PA | 1221 | Crc-RA | 1..614 | 17..630 | 3020 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crc-RB | 1677 | CG9429-RB | 85..700 | 15..630 | 3050 | 99.7 | Plus |
Crc-RA | 1430 | CG9429-RA | 85..700 | 15..630 | 3050 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9629760..9630182 | 630..208 | 2085 | 99.5 | Minus |
3R | 32079331 | 3R | 9630448..9630554 | 210..104 | 535 | 100 | Minus |
3R | 32079331 | 3R | 9630678..9630767 | 104..15 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:25:05 has no hits.
BO01505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:31:53 Download gff for
BO01505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-PA | 1..614 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:39 Download gff for
BO01505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9429-PA | 1..614 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:48:59 Download gff for
BO01505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 78..700 | 7..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:01:53 Download gff for
BO01505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 78..700 | 7..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:01:53 Download gff for
BO01505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9629760..9630180 | 210..630 | 99 | <- | Minus |
3R | 9630449..9630553 | 105..209 | 100 | <- | Minus |
3R | 9630678..9630774 | 7..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:48:59 Download gff for
BO01505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5455482..5455902 | 210..630 | 99 | <- | Minus |
arm_3R | 5456171..5456275 | 105..209 | 100 | <- | Minus |
arm_3R | 5456400..5456496 | 7..104 | 96 | | Minus |
BO01505.complete Sequence
1252 bp (1252 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629524
> BO01505.complete
GAAGTTATCAGTCGACATGATGTGGTGCAAAACAGTGATAGTGTTGCTGG
CGACAGTCGGCTTTATTAGTGCCGAGGTTTATCTGAAGGAGAATTTCGAC
AACGAAAACTGGGAGGATACGTGGATCTACAGCAAACATCCTGGCAAGGA
GTTCGGAAAATTCGTCCTCACCCCCGGTACCTTCTACAACGATGCTGAGG
CCGACAAAGGCATTCAGACCTCTCAGGATGCTCGATTCTACGCGGCCAGC
CGCAAGTTTGATGGCTTCTCCAACGAGGACAAGCCCCTCGTGGTGCAGTT
CTCCGTGAAGCACGAGCAGAATATCGACTGCGGCGGCGGCTATGTGAAGC
TGTTCGACTGCTCCCTCGACCAGACCGACATGCACGGCGAGTCGCCGTAC
GAGATCATGTTCGGCCCGGACATCTGCGGACCCGGCACCAAGAAGGTCCA
TGTGATCTTCAGCTACAAGGGCAAGAACCACCTAATCAGCAAAGACATCC
GCTGCAAAGATGACGTGTACACCCACTTCTACACGCTGATTGTCAGACCC
GACAACACGTACGAGGTGCTCATCGACAACGAGAAGGTGGAGTCTGGCAA
CCTGGAGGACGACTGGGACTTCCTGGCCCCCAAGAAGATCAAGGATCCCA
CCGCCACCAAGCCCGAAGACTGGGACGATAGGGCCACCATTCCCGATCCC
GATGACAAGAAGCCCGAGGACTGGGACAAACCAGAGCACATTCCCGACCC
AGATGCCACAAAGCCTGAGGATTGGGACGATGAGATGGACGGCGAGTGGG
AGCCACCGATGATCGACAACCCTGAGTTCAAGGGCGAGTGGCAGCCAAAG
CAGCTGGACAACCCCAACTACAAGGGCGCCTGGGAGCATCCCGAGATCGC
CAATCCCGAGTATGTGCCCGACGACAAGCTGTATCTGCGCAAGGAGATCT
GCACCCTGGGCTTCGATCTCTGGCAGGTCAAGTCCGGCACTATCTTCGAC
AACGTCCTGATCACGGACGACGTGGAGCTGGCCGCTAAGGCTGCTGCCGA
AGTCAAGAACACCCAGGCGGGCGAGAAGAAAATGAAGGAGGCCCAGGATG
AGGTGCAGCGCAAGAAGGACGAGGAGGAGGCGAAAAAGGCTTCCGACAAG
GACGATGAGGACGAGGATGATGACGATGAGGAGAAGGATGATGAATCTAA
GCAAGACAAAGATCAAAGCGAACACGACGAATTGGCAAGCTTTCTAGACC
AT
BO01505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crc-RB | 1221 | CG9429-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Crc-RA | 1221 | CG9429-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crc-RB | 1677 | CG9429-RB | 85..1304 | 15..1234 | 6100 | 100 | Plus |
Crc-RA | 1430 | CG9429-RA | 85..1304 | 15..1234 | 6100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9629064..9629616 | 1234..682 | 2765 | 100 | Minus |
3R | 32079331 | 3R | 9629707..9630182 | 683..208 | 2380 | 100 | Minus |
3R | 32079331 | 3R | 9630448..9630554 | 210..104 | 535 | 100 | Minus |
3R | 32079331 | 3R | 9630678..9630767 | 104..15 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:34:06 has no hits.
BO01505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:43 Download gff for
BO01505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 1..1221 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:23 Download gff for
BO01505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 112..1342 | 7..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:02:02 Download gff for
BO01505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 87..1304 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:44 Download gff for
BO01505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 112..1342 | 7..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:24 Download gff for
BO01505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crc-RA | 87..1304 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:24 Download gff for
BO01505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9629062..9629615 | 683..1236 | 99 | <- | Minus |
3R | 9629708..9630180 | 210..682 | 100 | <- | Minus |
3R | 9630449..9630553 | 105..209 | 100 | <- | Minus |
3R | 9630678..9630765 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:02:02 Download gff for
BO01505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5454784..5455337 | 683..1236 | 99 | <- | Minus |
arm_3R | 5455430..5455902 | 210..682 | 100 | <- | Minus |
arm_3R | 5456171..5456275 | 105..209 | 100 | <- | Minus |
arm_3R | 5456400..5456487 | 17..104 | 100 | | Minus |
BO01505.pep Sequence
Translation from 16 to 1252
> BO01505.pep
MMWCKTVIVLLATVGFISAEVYLKENFDNENWEDTWIYSKHPGKEFGKFV
LTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHE
QNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSY
KGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDW
DFLAPKKIKDPTATKPEDWDDRATIPDPDDKKPEDWDKPEHIPDPDATKP
EDWDDEMDGEWEPPMIDNPEFKGEWQPKQLDNPNYKGAWEHPEIANPEYV
PDDKLYLRKEICTLGFDLWQVKSGTIFDNVLITDDVELAAKAAAEVKNTQ
AGEKKMKEAQDEVQRKKDEEEAKKASDKDDEDEDDDDEEKDDESKQDKDQ
SEHDELASFLDH
BO01505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crc-PB | 406 | CG9429-PB | 1..406 | 1..406 | 2237 | 100 | Plus |
Crc-PA | 406 | CG9429-PA | 1..406 | 1..406 | 2237 | 100 | Plus |
Cnx99A-PE | 604 | CG11958-PE | 149..551 | 88..397 | 570 | 32.7 | Plus |
CG1924-PA | 570 | CG1924-PA | 145..437 | 88..344 | 564 | 39.1 | Plus |
Cnx99A-PD | 605 | CG11958-PD | 149..552 | 88..397 | 560 | 32.8 | Plus |