Clone Sequence Records
BO01508.3prime Sequence
903 bp (796 high quality bases) assembled on 2005-11-30
> BO01508.3prime
ATGGTCTAGAAAGCTTGCGCTGACCACATCGTTTCCATGTCCATTCTGAC
GCAACAGTTCCAGTTTCAGTTCGTGCTCTCTCGCCTTCAGACGCAGTGCG
GCAATGGAGGAGGTGCGCCTGTCCTCGGGTGGCGTTGCAGCTCTGGGAGG
TGGCGGCGGAGCCTGATGCGATGGTGGAGGCAGTTGTCGTTGGGGAGAGT
GCGACAAAGTCAGGGCCACCGGGGAAGTCTGGGTGGGCGATAGACTCGAG
GCCTGTTGGGTCAAGGCGATCCCAACCAGATGCTGGGGAGAAAGCTGAGC
AGGCTGGACTCCAACTGGCATTTGAGGAGGCGCCTGAGGTGGCGGGGGGT
GAGCGGTTGGATGTTGTTGATGCTGGGAGGCGTGCCCGGAGGCAGGCGAT
GTGGGTGGTGAGGCGAGCATGTGGTTGGGCGAATGCAGATCGGGAGATCC
CACCAGTAGTGCAGGAGGTTTTCCAAGTGGAGTCCCGCGCGGAACGGCCG
TCATATTGGCCAGCAAGGATTGAAATGAGCTCGAGGGAGAGTACATACCA
GCCATTCCATGTGGTAACATATGGGGAGGAGCCCTCTGGAATTGGTTAAA
GTAGCCCGACGGAATCATGGGGGCCGCAGAGAGGTGCGGGTAGCGGAAGG
CGGCAAGGTTCGCGGCATGTTGGGCGTCGAAGGGCTTGCGCAGCTGGAAG
CCCAGGTGAGTGAAGGGATTGGGCGGTAGGGCGGCCCCAACTACCGTCTG
CATGGTGGCGGCGCCGCCGGGCAGGTAGGGATTATACGGATGCGACTGGN
GGCCAACCTTCTCCTGCTTGCGCCACTTGGCGCGCCGATTTTGAAACCAA
ACCTGAATGCGCGCCTCGGTTAATCCAATTTTCATCGCCAGCTCCTCTCT
CGT
BO01508.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3935-PA | 1227 | al-RA | 340..1224 | 903..19 | 4406 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
al-RA | 1806 | CG3935-RA | 750..1634 | 903..19 | 4414 | 99.9 | Minus |
Pph13-RA | 1880 | CG2819-RA | 626..717 | 899..808 | 190 | 80.4 | Minus |
CG32532-RD | 4278 | CG32532-RD | 2709..2768 | 868..809 | 180 | 86.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 386701..387267 | 585..19 | 2835 | 100 | Minus |
2L | 23513712 | 2L | 386305..386577 | 855..583 | 1354 | 99.6 | Minus |
2L | 23513712 | 2L | 385699..385748 | 900..851 | 250 | 100 | Minus |
2L | 23513712 | 2L | 578232..578323 | 899..808 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:14:13 has no hits.
BO01508.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:31:58 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:45 Download gff for
BO01508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3935-PA | 340..1227 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:35 Download gff for
BO01508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 750..1639 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:06 Download gff for
BO01508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 750..1639 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:06 Download gff for
BO01508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 385697..385746 | 853..903 | 96 | -> | Minus |
2L | 386308..386576 | 584..852 | 99 | -> | Minus |
2L | 386703..387272 | 12..583 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:35 Download gff for
BO01508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 385697..385746 | 853..903 | 96 | -> | Minus |
arm_2L | 386308..386576 | 584..852 | 99 | -> | Minus |
arm_2L | 386703..387272 | 12..583 | 99 | | Minus |
BO01508.5prime Sequence
863 bp (832 high quality bases) assembled on 2005-11-30
> BO01508.5prime
GAAGTTATCAGTCGACATGGGCATATCGGAGGAAATCAAGCTGGAGGAAC
TACCGCAAGAAGCCAAGCTAGCGCACCCGGATGCCGTAGTGCTGGTGGAT
CGTGCCCCAGGATCGTCGGCCGCCTCCGCCGGCGCAGCGCTGACGGTTTC
GATGTCGGTCTCGGGCGGAGCGCCCAGTGGAGCAAGTGGGGCCAGTGGCG
GCACCAATAGCCCCGTTTCGGATGGAAACAGCGACTGCGAAGCGGACGAG
TACGCCCCGAAGCGGAAGCAGCGGCGCTATCGCACAACCTTCACCAGCTT
TCAGCTCGAGGAGCTGGAGAAGGCATTCTCGCGGACCCATTATCCCGACG
TGTTTACGAGAGAGGAGCTGGCGATGAAAATTGGATTAACCGAGGCGCGC
ATTCAGGTTTGGTTTCAAAATCGGCGCGCCAAGTGGCGCAAGCAGGAGAA
GGTTGGCCCCCAGTCGCATCCGTATAATCCCTACCTGCCCGGCGGCGCCG
CCACCATGCAGACGGTAGTTGGGGCCGCCCTACCGCCCAATCCCTTCACT
CACCTGGGCTTCCAGCTGCGCAAGCCCTTCGACGCCCAACATGCCGCGAA
CCTTGCCGCCTTCCGCTACCCGCACCTCTCTGCGGCCCCCATGATTCCGT
CGGGCTACTTTAACCAATTCCAGAGGGCTCCTCCCCATATGTTACCACAT
GGAATGGCTGGTATGTACTCTCCCTCGAGCTCATTTCAATCCTTGCTGGC
CAATATGACGGCCGTTCCGCGCGGGACTCCACTTGGAAAACCTCCTGCAC
TACTGGTGGGATCTCCCGATCTGCATTCGCCCAACCACATGCTCGCCTCA
CCACCCACATCGC
BO01508.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3935-PA | 1227 | al-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
al-RA | 1806 | CG3935-RA | 411..1257 | 17..863 | 4235 | 100 | Plus |
Pph13-RA | 1880 | CG2819-RA | 575..717 | 309..451 | 265 | 79 | Plus |
CG34340-RF | 2989 | CG34340-RF | 736..916 | 262..442 | 260 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 384551..384894 | 17..360 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 386305..386577 | 404..676 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 386701..386890 | 674..863 | 950 | 100 | Plus |
2L | 23513712 | 2L | 578181..578323 | 309..451 | 265 | 79 | Plus |
2L | 23513712 | 2L | 385699..385748 | 359..408 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:42:57 has no hits.
BO01508.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:31:59 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:47 Download gff for
BO01508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3935-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:08 Download gff for
BO01508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 411..1257 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:12 Download gff for
BO01508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 411..1257 | 17..863 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:12 Download gff for
BO01508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 384551..384894 | 17..360 | 100 | -> | Plus |
2L | 385701..385746 | 361..406 | 100 | -> | Plus |
2L | 386308..386576 | 407..675 | 100 | -> | Plus |
2L | 386703..386890 | 676..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:08 Download gff for
BO01508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 386703..386890 | 676..863 | 100 | | Plus |
arm_2L | 384551..384894 | 17..360 | 100 | -> | Plus |
arm_2L | 385701..385746 | 361..406 | 100 | -> | Plus |
arm_2L | 386308..386576 | 407..675 | 100 | -> | Plus |
BO01508.complete Sequence
1258 bp (1258 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629525
> BO01508.complete
GAAGTTATCAGTCGACATGGGCATATCGGAGGAAATCAAGCTGGAGGAAC
TACCGCAAGAAGCCAAGCTAGCGCACCCGGATGCCGTAGTGCTGGTGGAT
CGTGCCCCAGGATCGTCGGCCGCCTCCGCCGGCGCAGCGCTGACGGTTTC
GATGTCGGTCTCGGGCGGAGCGCCCAGTGGAGCAAGTGGGGCCAGTGGCG
GCACCAATAGCCCCGTTTCGGATGGAAACAGCGACTGCGAAGCGGACGAG
TACGCCCCGAAGCGGAAGCAGCGGCGCTATCGCACAACCTTCACCAGCTT
TCAGCTCGAGGAGCTGGAGAAGGCATTCTCGCGGACCCATTATCCCGACG
TGTTTACGAGAGAGGAGCTGGCGATGAAAATTGGATTAACCGAGGCGCGC
ATTCAGGTTTGGTTTCAAAATCGGCGCGCCAAGTGGCGCAAGCAGGAGAA
GGTTGGCCCCCAGTCGCATCCGTATAATCCCTACCTGCCCGGCGGCGCCG
CCACCATGCAGACGGTAGTTGGGGCCGCCCTACCGCCCAATCCCTTCACT
CACCTGGGCTTCCAGCTGCGCAAGCCCTTCGACGCCCAACATGCCGCGAA
CCTTGCCGCCTTCCGCTACCCGCACCTCTCTGCGGCCCCCATGATTCCGT
CGGGCTACTTTAACCAATTCCAGAGGGCTCCTCCCCATATGTTACCACAT
GGAATGGCTGGTATGTACTCTCCCTCGAGCTCATTTCAATCCTTGCTGGC
CAATATGACGGCCGTTCCGCGCGGGACTCCACTTGGAAAACCTCCTGCAC
TACTGGTGGGATCTCCCGATCTGCATTCGCCCAACCACATGCTCGCCTCA
CCACCCACATCGCCTGCCTCCGGGCACGCCTCCCAGCATCAACAACATCC
AACCGCTCACCCCCCGCCACCTCAGGCGCCTCCTCAAATGCCAGTTGGAG
TCCAGCCTGCTCAGCTTTCTCCCCAGCATCTGGTTGGGATCGCCTTGACC
CAACAGGCCTCGAGTCTATCGCCCACCCAGACTTCCCCGGTGGCCCTGAC
TTTGTCGCACTCTCCCCAACGACAACTGCCTCCACCATCGCATCAGGCTC
CGCCGCCACCTCCCAGAGCTGCAACGCCACCCGAGGACAGGCGCACCTCC
TCCATTGCCGCACTGCGTCTGAAGGCGAGAGAGCACGAACTGAAACTGGA
ACTGTTGCGTCAGAATGGACATGGAAACGATGTGGTCAGCGCAAGCTTTC
TAGACCAT
BO01508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
al-RA | 1227 | CG3935-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Pph13-RA | 1074 | CG2819-PA | 68..210 | 309..451 | 265 | 79 | Plus |
CG34340-RF | 1764 | CG34340-PF | 147..327 | 262..442 | 245 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
al-RA | 1806 | CG3935-RA | 411..1634 | 17..1240 | 6120 | 100 | Plus |
Pph13-RA | 1880 | CG2819-RA | 575..717 | 309..451 | 265 | 79 | Plus |
CG34340-RF | 2989 | CG34340-RF | 736..916 | 262..442 | 245 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 386701..387267 | 674..1240 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 384551..384894 | 17..360 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 386305..386577 | 404..676 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 578181..578323 | 309..451 | 265 | 79 | Plus |
2L | 23513712 | 2L | 385699..385748 | 359..408 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:10:25 has no hits.
BO01508.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:07 Download gff for
BO01508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 1..1227 | 17..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:42 Download gff for
BO01508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 407..1635 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:16 Download gff for
BO01508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 411..1634 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:07 Download gff for
BO01508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 407..1635 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:25 Download gff for
BO01508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 411..1634 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:25 Download gff for
BO01508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 386308..386576 | 407..675 | 100 | -> | Plus |
2L | 384551..384894 | 17..360 | 100 | -> | Plus |
2L | 385701..385746 | 361..406 | 100 | -> | Plus |
2L | 386703..387267 | 676..1242 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:16 Download gff for
BO01508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 384551..384894 | 17..360 | 100 | -> | Plus |
arm_2L | 385701..385746 | 361..406 | 100 | -> | Plus |
arm_2L | 386308..386576 | 407..675 | 100 | -> | Plus |
arm_2L | 386703..387267 | 676..1242 | 99 | | Plus |
BO01508.pep Sequence
Translation from 16 to 1258
> BO01508.pep
MGISEEIKLEELPQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSG
GAPSGASGASGGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEEL
EKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKVGPQS
HPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQHAANLAAFR
YPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAV
PRGTPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHASQHQQHPTAHPP
PPQAPPQMPVGVQPAQLSPQHLVGIALTQQASSLSPTQTSPVALTLSHSP
QRQLPPPSHQAPPPPPRAATPPEDRRTSSIAALRLKAREHELKLELLRQN
GHGNDVVSASFLDH
BO01508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
al-PA | 408 | CG3935-PA | 1..408 | 1..408 | 2146 | 100 | Plus |
Rx-PB | 904 | CG10052-PB | 541..892 | 67..390 | 375 | 33.5 | Plus |
otp-PK | 416 | CG10036-PK | 69..392 | 38..335 | 321 | 30.3 | Plus |
otp-PJ | 374 | CG10036-PJ | 69..350 | 38..335 | 319 | 32.3 | Plus |
hbn-PA | 409 | CG33152-PA | 139..364 | 71..306 | 312 | 35.6 | Plus |