Clone Sequence Records
BO01512.3prime Sequence
915 bp (816 high quality bases) assembled on 2005-11-30
> BO01512.3prime
ATGGTCTAGAAAGCTTGCAATGGACGAGCTGGTTCCTAATATGTCCGAGA
TGCTGAAGCTGCTGCGCTTCGGCTTGGCCATCGTCGGATCGCTGGATGAC
GAAGCAGGGGCAGTAGCAGTGGCTGGCACAGGCGGAGATGGAGGCGGAGG
AGCAGCCGGTGCGGTTCCAACCACATCTACAAAGGTGTCGGCATCGGCAT
CTGCCTCTCGGTCGGCAGCAGATTCGCCGCTCGTCGAGCCCGCCGAGGAG
GACGAGACAGAGGAGGCCGGCGATGGCGGTGTGTAAGCCCAACTTGGATA
AGCACCACCGATGTGCCTGGCATACTCGATGGCCGGCGGCGGTGGCGCTG
GCACATAGAAATTGGCCTCCAGAGCATCCAGCAGATAGTGACGCTGCATA
GGAACACTGTGATGACTCTGGTGATGATGGTGCTGGGGAAATTCCTCCAC
GAGTCGCAACCGTTTGGCTAACGGCGATGTCACCGGGCTTCGATCCACCT
GGTTTGCCTCGGGCTGCGTTGGCGGTGGCGAGTCATTGATCTTCCGTTTG
CATCTCGACTGACCCGACTCACGGAATCCCTTGGCAAAGGGATTGTTGTC
GATCTTCAGCTTGGTTATGCGGTCATTCTGATAAGCTGTTACGGCTATAA
ACTCCGTCTCCGGAAAGATAAAGGCCTGTTGGGGGGCCCAGGGAATCTGG
CCGAGATCAGAGGTTCGTATGACGTGCAGACGCGGCTGATACTTGTGCAT
GCTGGCCAAGACGATATGACCATTGTTATCCAGCGTATTATTCGTCAATT
TCACTTTGCTGAAGAGCAGAGCCTGGGATTGCCAGTGTTTTCCCGTGGCT
GGACTCTCCGGATGCAGATACATGCGCTGCGGGCTCTGGGGCTCGGCTCC
TCCGGCCGGCACCCC
BO01512.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5093-PA | 1275 | Doc3-RA | 377..1272 | 914..19 | 4480 | 100 | Minus |
CG5187-PB | 1410 | Doc2-RB | 484..578 | 798..704 | 250 | 90.5 | Minus |
CG5187-PA | 1410 | Doc2-RA | 484..578 | 798..704 | 250 | 90.5 | Minus |
CG5133-PA | 1176 | Doc1-RA | 382..440 | 909..851 | 245 | 96.6 | Minus |
CG5187-PB | 1410 | Doc2-RB | 661..710 | 621..572 | 175 | 94 | Minus |
CG5187-PA | 1410 | Doc2-RA | 661..710 | 621..572 | 175 | 94 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1671 | CG5093-RA | 499..1394 | 914..19 | 4480 | 100 | Minus |
Doc2-RA | 1945 | CG5187-RA | 723..1098 | 914..539 | 890 | 82.8 | Minus |
Doc1-RB | 1339 | CG5133-RB | 355..728 | 914..541 | 790 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9006361..9006972 | 630..19 | 3060 | 100 | Minus |
3L | 28110227 | 3L | 9005894..9006042 | 914..766 | 745 | 100 | Minus |
3L | 28110227 | 3L | 9006159..9006296 | 765..628 | 690 | 100 | Minus |
3L | 28110227 | 3L | 9014492..9014626 | 628..762 | 405 | 86.7 | Plus |
3L | 28110227 | 3L | 9043507..9043642 | 914..779 | 380 | 85.3 | Minus |
3L | 28110227 | 3L | 9013533..9013624 | 539..630 | 265 | 85.9 | Plus |
3L | 28110227 | 3L | 9014716..9014856 | 774..914 | 240 | 78 | Plus |
3L | 28110227 | 3L | 9043724..9043861 | 765..628 | 225 | 77.5 | Minus |
3L | 28110227 | 3L | 9044342..9044431 | 630..541 | 210 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:44:37 has no hits.
BO01512.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:05 Download gff for
BO01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-PA | 375..1275 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:57 Download gff for
BO01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5093-PA | 375..1275 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:16 Download gff for
BO01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 497..1407 | 6..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:21 Download gff for
BO01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 497..1407 | 6..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:21 Download gff for
BO01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9005892..9006042 | 766..915 | 99 | -> | Minus |
3L | 9006159..9006296 | 628..765 | 100 | -> | Minus |
3L | 9006364..9006985 | 6..627 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:16 Download gff for
BO01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8998992..8999142 | 766..915 | 99 | -> | Minus |
arm_3L | 8999259..8999396 | 628..765 | 100 | -> | Minus |
arm_3L | 8999464..9000085 | 6..627 | 99 | | Minus |
BO01512.5prime Sequence
799 bp (797 high quality bases) assembled on 2005-11-30
> BO01512.5prime
GAAGTTATCAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGAT
TGCAGCAGCAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGT
TTACCCGATCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTAT
GCCACCGCCGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCA
AGCTGGAGAATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAG
ATGATCATCACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTC
CCTCAGTGGACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGG
TGCCCATTGGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCG
GCCGGAGGAGCCGAGCCCCAGAGCCCGCAGCGCATGTATCTGCATCCGGA
GAGTCCAGCCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCA
AAGTGAAATTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTG
GCCAGCATGCACAAGTATCAGCCGCGTCTGCACGTCATACGAACCTCTGA
TCTCGGCCAGATTCCCTGGGCCCCCCAACAGGCCTTTATCTTTCCGGAGA
CGGAGTTTATAGCCGTAACAGCTTATCAGAATGACCGCATAACCAAGCTG
AAGATCGACAACAATCCCTTTGCCAAGGGATTCCGTGAGTCGGGTCAGTC
GAGATGCAAACGGAAGATCAATGACTCGCCACCGCCAACGCAGCCCGAG
BO01512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5093-PA | 1275 | Doc3-RA | 1..783 | 17..799 | 3915 | 100 | Plus |
CG5133-PA | 1176 | Doc1-RA | 223..440 | 239..456 | 740 | 93.5 | Plus |
CG5187-PB | 1410 | Doc2-RB | 303..437 | 328..462 | 275 | 88.1 | Plus |
CG5187-PA | 1410 | Doc2-RA | 303..437 | 328..462 | 275 | 88.1 | Plus |
CG5187-PB | 1410 | Doc2-RB | 484..578 | 509..603 | 250 | 90.5 | Plus |
CG5187-PA | 1410 | Doc2-RA | 484..578 | 509..603 | 250 | 90.5 | Plus |
CG5187-PB | 1410 | Doc2-RB | 661..710 | 686..735 | 175 | 94 | Plus |
CG5187-PA | 1410 | Doc2-RA | 661..710 | 686..735 | 175 | 94 | Plus |
CG5187-PB | 1410 | Doc2-RB | 226..269 | 251..294 | 145 | 93.1 | Plus |
CG5187-PA | 1410 | Doc2-RA | 226..269 | 251..294 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1671 | CG5093-RA | 123..905 | 17..799 | 3915 | 100 | Plus |
Doc1-RB | 1339 | CG5133-RB | 138..728 | 173..766 | 1505 | 83.7 | Plus |
Doc1-RA | 1526 | CG5133-RA | 325..915 | 173..766 | 1505 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9005772..9006042 | 271..541 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 9043385..9043642 | 271..528 | 870 | 89.1 | Plus |
3L | 28110227 | 3L | 9005470..9005636 | 107..273 | 835 | 100 | Plus |
3L | 28110227 | 3L | 9006159..9006296 | 542..679 | 690 | 100 | Plus |
3L | 28110227 | 3L | 9006361..9006483 | 677..799 | 615 | 100 | Plus |
3L | 28110227 | 3L | 9014716..9014937 | 533..312 | 495 | 81.5 | Minus |
3L | 28110227 | 3L | 9005318..9005408 | 17..107 | 455 | 100 | Plus |
3L | 28110227 | 3L | 9014492..9014626 | 679..545 | 405 | 86.7 | Minus |
3L | 28110227 | 3L | 9013533..9013624 | 768..677 | 265 | 85.9 | Minus |
3L | 28110227 | 3L | 9042116..9042196 | 191..271 | 240 | 86.4 | Plus |
3L | 28110227 | 3L | 9043724..9043861 | 542..679 | 225 | 77.5 | Plus |
3L | 28110227 | 3L | 9044342..9044431 | 677..766 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:51:14 has no hits.
BO01512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:06 Download gff for
BO01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:30:58 Download gff for
BO01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5093-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:42 Download gff for
BO01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 123..905 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:37:23 Download gff for
BO01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 123..905 | 17..799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:37:23 Download gff for
BO01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9005471..9005636 | 108..273 | 100 | -> | Plus |
3L | 9005775..9006042 | 274..541 | 100 | -> | Plus |
3L | 9006159..9006296 | 542..679 | 100 | -> | Plus |
3L | 9006364..9006483 | 680..799 | 100 | | Plus |
3L | 9005318..9005408 | 17..107 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:42 Download gff for
BO01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8998418..8998508 | 17..107 | 100 | -> | Plus |
arm_3L | 8998571..8998736 | 108..273 | 100 | -> | Plus |
arm_3L | 8998875..8999142 | 274..541 | 100 | -> | Plus |
arm_3L | 8999259..8999396 | 542..679 | 100 | -> | Plus |
arm_3L | 8999464..8999583 | 680..799 | 100 | | Plus |
BO01512.complete Sequence
1306 bp (1306 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629526
> BO01512.complete
GAAGTTATCAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGAT
TGCAGCAGCAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGT
TTACCCGATCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTAT
GCCACCGCCGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCA
AGCTGGAGAATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAG
ATGATCATCACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTC
CCTCAGTGGACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGG
TGCCCATTGGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCG
GCCGGAGGAGCCGAGCCCCAGAGCCCGCAGCGCATGTATCTGCATCCGGA
GAGTCCAGCCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCA
AAGTGAAATTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTG
GCCAGCATGCACAAGTATCAGCCGCGTCTGCACGTCATACGAACCTCTGA
TCTCGGCCAGATTCCCTGGGCCCCCCAACAGGCCTTTATCTTTCCGGAGA
CGGAGTTTATAGCCGTAACAGCTTATCAGAATGACCGCATAACCAAGCTG
AAGATCGACAACAATCCCTTTGCCAAGGGATTCCGTGAGTCGGGTCAGTC
GAGATGCAAACGGAAGATCAATGACTCGCCACCGCCAACGCAGCCCGAGG
CAAACCAGGTGGATCGAAGCCCGGTGACATCGCCGTTAGCCAAACGGTTG
CGACTCGTGGAGGAATTTCCCCAGCACCATCATCACCAGAGTCATCACAG
TGTTCCTATGCAGCGTCACTATCTGCTGGATGCTCTGGAGGCCAATTTCT
ATGTGCCAGCGCCACCGCCGCCGGCCATCGAGTATGCCAGGCACATCGGT
GGTGCTTATCCAAGTTGGGCTTACACACCGCCATCGCCGGCCTCCTCTGT
CTCGTCCTCCTCGGCGGGCTCGACGAGCGGCGAATCTGCTGCCGACCGAG
AGGCAGATGCCGATGCCGACACCTTTGTAGATGTGGTTGGAACCGCACCG
GCTGCTCCTCCGCCTCCATCTCCGCCTGTGCCAGCCACTGCTACTGCCCC
TGCTTCGTCATCCAGCGATCCGACGATGGCCAAGCCGAAGCGCAGCAGCT
TCAGCATCTCGGACATATTAGGAACCAGCTCGTCCATTGCAAGCTTTCTA
GACCAT
BO01512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1275 | CG5093-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Doc1-RB | 1071 | CG5133-PB | 70..645 | 191..766 | 1500 | 84 | Plus |
Doc1-RA | 1176 | CG5133-PA | 175..750 | 191..766 | 1500 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1671 | CG5093-RA | 123..1394 | 17..1288 | 6360 | 100 | Plus |
Doc1-RB | 1339 | CG5133-RB | 153..728 | 191..766 | 1500 | 84 | Plus |
Doc1-RA | 1526 | CG5133-RA | 340..915 | 191..766 | 1500 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9006361..9006972 | 677..1288 | 3060 | 100 | Plus |
3L | 28110227 | 3L | 9005772..9006042 | 271..541 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 9043385..9043642 | 271..528 | 870 | 89.1 | Plus |
3L | 28110227 | 3L | 9005470..9005636 | 107..273 | 835 | 100 | Plus |
3L | 28110227 | 3L | 9006159..9006296 | 542..679 | 690 | 100 | Plus |
3L | 28110227 | 3L | 9014716..9014937 | 533..312 | 495 | 81.5 | Minus |
3L | 28110227 | 3L | 9005318..9005408 | 17..107 | 455 | 100 | Plus |
3L | 28110227 | 3L | 9014492..9014626 | 679..545 | 405 | 86.7 | Minus |
3L | 28110227 | 3L | 9013533..9013624 | 768..677 | 265 | 85.9 | Minus |
3L | 28110227 | 3L | 9042116..9042196 | 191..271 | 240 | 86.4 | Plus |
3L | 28110227 | 3L | 9043724..9043861 | 542..679 | 225 | 77.5 | Plus |
3L | 28110227 | 3L | 9044342..9044431 | 677..766 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:54:42 has no hits.
BO01512.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:46 Download gff for
BO01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 1..1275 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:25 Download gff for
BO01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 121..1405 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:44:08 Download gff for
BO01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 128..1394 | 22..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:47 Download gff for
BO01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 121..1405 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:59 Download gff for
BO01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 128..1394 | 22..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:59 Download gff for
BO01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9005323..9005408 | 22..107 | 100 | -> | Plus |
3L | 9005471..9005636 | 108..273 | 100 | -> | Plus |
3L | 9005775..9006042 | 274..541 | 100 | -> | Plus |
3L | 9006159..9006296 | 542..679 | 100 | -> | Plus |
3L | 9006364..9006972 | 680..1290 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:44:08 Download gff for
BO01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8998423..8998508 | 22..107 | 100 | -> | Plus |
arm_3L | 8998571..8998736 | 108..273 | 100 | -> | Plus |
arm_3L | 8998875..8999142 | 274..541 | 100 | -> | Plus |
arm_3L | 8999259..8999396 | 542..679 | 100 | -> | Plus |
arm_3L | 8999464..9000072 | 680..1290 | 99 | | Plus |
BO01512.pep Sequence
Translation from 16 to 1306
> BO01512.pep
MLTLPNIADLRLQQQIAQEIYRQQIMQRLPDPLCGLLPNFAGHFMPPPPP
PQPTLPGDVEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLE
EEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATG
KHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSDLGQIP
WAPQQAFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRK
INDSPPPTQPEANQVDRSPVTSPLAKRLRLVEEFPQHHHHQSHHSVPMQR
HYLLDALEANFYVPAPPPPAIEYARHIGGAYPSWAYTPPSPASSVSSSSA
GSTSGESAADREADADADTFVDVVGTAPAAPPPPSPPVPATATAPASSSS
DPTMAKPKRSSFSISDILGTSSSIASFLDH
BO01512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-PA | 424 | CG5093-PA | 1..424 | 1..424 | 2256 | 100 | Plus |
Doc1-PA | 391 | CG5133-PA | 1..389 | 1..418 | 1161 | 59.4 | Plus |
Doc2-PA | 469 | CG5187-PA | 1..252 | 1..255 | 1065 | 77.2 | Plus |
Doc1-PB | 356 | CG5133-PB | 16..354 | 50..418 | 1046 | 60.6 | Plus |
bi-PE | 970 | CG3578-PE | 319..685 | 50..400 | 609 | 37.6 | Plus |