Clone Sequence Records
BO01515.3prime Sequence
858 bp (827 high quality bases) assembled on 2005-11-30
> BO01515.3prime
ATGGTCTAGAAAGCTTGCATAAAATTTACAAGGACTATTGTGCTGGGCGT
TGCTGATGACGACACACGGGCCGTGCTGCACCTTCACGGAGCTCTCGCTG
CGCCAGTCGCACTCGATGGGCACAAACTGACCCTTCCGCATCATGGTCTT
GGGCTTGGTGATGCCGTAGCAGGCGTGCTGGAAGACGCTTCTCGAGATGG
GCAGGCACTGCTCGTAGATCTCCACGATGTCCGCGTGCATGCTGTCCACG
GAGAAGTCCTGGCCACAGCGCAGCTTCTGGTGGATGTGCAGTTTGCTGCG
TCGCGAGAACTGGGTGCGACACCTCCGGCAGTGGAGGTCCTTTAGCGGCG
AGCTGGTCTGATCCCTTTCGATGGAATTGACGGGGGTGGAGAGCTCGTGG
AGCCGCTGGAATTGGCCCATGATATTGTTCAGGATGAGGAAGTTCTTGTT
GGGCAGCTGCTGGAGGGTTTCGCTGATATGATAGGGCACCACATACAGCT
CCTTGGTGGTCTTGCACTGCTGCAGTCCGTAGAGATTGACGCGCATGTTG
GGCGGGAAGTAGCCGTTGCACTCGCGGAAGTGCTTCAGGTAGGCGGAGCG
CAGACTGGCAAGCTCTGCCTCGCTGGTGGAGCAGCCGGTAGTGGCGGTCA
GGCCCTCCTCCTCCTGAAGCTGCAGGGGTAGGGCGAAGACGGACGAGTCC
GCTGACTGACCGTCCGCCTCCACCCTAATCCTCTTCACCTGTACTTTCAA
TCTGGTGATGCTGCACTCTGCCATGCCGTACTCGCTGCTGCAGTTGAGGT
AGTTTTCAATCCTCTGCATAAGCATCTCGTAGACCACGCCCACGGATTCG
TCTACGTC
BO01515.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4216-PA | 1287 | term-RA | 445..1284 | 858..19 | 4200 | 100 | Minus |
| CG7271-PA | 1284 | CG7271-RA | 442..1281 | 858..19 | 4125 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1469 | CG4216-RA | 605..1444 | 858..19 | 4200 | 100 | Minus |
| CG7271-RA | 1407 | CG7271-RA | 542..1381 | 858..19 | 4155 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18592328..18593167 | 19..858 | 4200 | 100 | Plus |
| 3L | 28110227 | 3L | 18589300..18590139 | 858..19 | 4155 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:07:00 has no hits.
BO01515.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:11 Download gff for
BO01515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-PA | 445..1287 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:05 Download gff for
BO01515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4216-PA | 445..1287 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:35 Download gff for
BO01515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 605..1447 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:22 Download gff for
BO01515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 605..1447 | 15..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:22 Download gff for
BO01515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18592324..18593167 | 15..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:35 Download gff for
BO01515.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18585424..18586267 | 15..858 | 99 | | Plus |
BO01515.5prime Sequence
594 bp (591 high quality bases) assembled on 2005-11-30
> BO01515.5prime
GAAGTTATCAGTCGACATGTTCGACGAGCCCATAATCTCCAGCTTCGTTT
TTACCAACGAGGAGACCACGCAGACATTCCACCACCAGTGGTTTTCCCAG
GGCCAGTTACACGAATGTGCCACCTGCTACAGCTCCATCGACGCAGATGA
GCCGCCCTCCCAGCATTGGCTGCGGGGAGGAGAAGCATCACAGGGCTTGC
ATCTTACCAAGCAACAGCAGGCCGTTATGGATATTATCGAGGCCCGCCAG
ATCGAGACTTTCTTCTTCTGCGACGAGAGTTCCAAGGACAAGCTGGAACA
CTTCATGGGCGAGACCTGTGCGAGGGGAATCCCCGAGCTTCTCCGCTGGA
TGTTCCAGAACAACACCGTGGCCGTGGAGTTCAATCTGGCCTGCTACGTG
AACGCCATGGACCAGGTGTTGATCTTTCAGAGCGGCTCGCTGAGGGCGGA
CCACCACTACGACGTAGACGAATCCGTGGGCGTGGTCTACGAGATGCTTA
TGCAGAGGATTGAAAACTACCTCAACTGCAGCAGCGAGTACGGCATGGCA
GAGTGCAGCATCACCAGATTGAAAGTACAGGTGAAGAGGATTAG
BO01515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4216-PA | 1287 | term-RA | 1..578 | 17..594 | 2890 | 100 | Plus |
| CG7271-PA | 1284 | CG7271-RA | 19..575 | 38..594 | 2635 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1469 | CG4216-RA | 160..738 | 16..594 | 2895 | 100 | Plus |
| CG7271-RA | 1407 | CG7271-RA | 100..675 | 16..594 | 2750 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:51:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18593034..18593612 | 594..16 | 2895 | 100 | Minus |
| 3L | 28110227 | 3L | 18588858..18589433 | 16..594 | 2725 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:51:47 has no hits.
BO01515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:12 Download gff for
BO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-PA | 1..578 | 17..594 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:06 Download gff for
BO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4216-PA | 1..578 | 17..594 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:47 Download gff for
BO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 151..738 | 6..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:37:32 Download gff for
BO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 151..738 | 6..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:37:32 Download gff for
BO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18593034..18593621 | 6..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:47 Download gff for
BO01515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18586134..18586721 | 6..594 | 99 | | Minus |
BO01515.complete Sequence
1318 bp (1318 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629528
> BO01515.complete
GAAGTTATCAGTCGACATGTTCGACGAGCCCATAATCTCCAGCTTCGTTT
TTACCAACGAGGAGACCACGCAGACATTCCACCACCAGTGGTTTTCCCAG
GGCCAGTTACACGAATGTGCCACCTGCTACAGCTCCATCGACGCAGATGA
GCCGCCCTCCCAGCATTGGCTGCGGGGAGGAGAAGCATCACAGGGCTTGC
ATCTTACCAAGCAACAGCAGGCCGTTATGGATATTATCGAGGCCCGCCAG
ATCGAGACTTTCTTCTTCTGCGACGAGAGTTCCAAGGACAAGCTGGAACA
CTTCATGGGCGAGACCTGTGCGAGGGGAATCCCCGAGCTTCTCCGCTGGA
TGTTCCAGAACAACACCGTGGCCGTGGAGTTCAATCTGGCCTGCTACGTG
AACGCCATGGACCAGGTGTTGATCTTTCAGAGCGGCTCGCTGAGGGCGGA
CCACCACTACGACGTAGACGAATCCGTGGGCGTGGTCTACGAGATGCTTA
TGCAGAGGATTGAAAACTACCTCAACTGCAGCAGCGAGTACGGCATGGCA
GAGTGCAGCATCACCAGATTGAAAGTACAGGTGAAGAGGATTAGGGTGGA
GGCGGACGGTCAGTCAGCGGACTCGTCCGTCTTCGCCCTACCCCTGCAGC
TTCAGGAGGAGGAGGGCCTGACCGCCACTACCGGCTGCTCCACCAGCGAG
GCAGAGCTTGCCAGTCTGCGCTCCGCCTACCTGAAGCACTTCCGCGAGTG
CAACGGCTACTTCCCGCCCAACATGCGCGTCAATCTCTACGGACTGCAGC
AGTGCAAGACCACCAAGGAGCTGTATGTGGTGCCCTATCATATCAGCGAA
ACCCTCCAGCAGCTGCCCAACAAGAACTTCCTCATCCTGAACAATATCAT
GGGCCAATTCCAGCGGCTCCACGAGCTCTCCACCCCCGTCAATTCCATCG
AAAGGGATCAGACCAGCTCGCCGCTAAAGGACCTCCACTGCCGGAGGTGT
CGCACCCAGTTCTCGCGACGCAGCAAACTGCACATCCACCAGAAGCTGCG
CTGTGGCCAGGACTTCTCCGTGGACAGCATGCACGCGGACATCGTGGAGA
TCTACGAGCAGTGCCTGCCCATCTCGAGAAGCGTCTTCCAGCACGCCTGC
TACGGCATCACCAAGCCCAAGACCATGATGCGGAAGGGTCAGTTTGTGCC
CATCGAGTGCGACTGGCGCAGCGAGAGCTCCGTGAAGGTGCAGCACGGCC
CGTGTGTCGTCATCAGCAACGCCCAGCACAATAGTCCTTGTAAATTTTAT
GCAAGCTTTCTAGACCAT
BO01515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1287 | CG4216-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| CG7271-RA | 1284 | CG7271-PA | 1..1281 | 17..1300 | 6220 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1469 | CG4216-RA | 160..1444 | 16..1300 | 6425 | 100 | Plus |
| CG7271-RA | 1407 | CG7271-RA | 100..1381 | 16..1300 | 6225 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18592328..18593612 | 1300..16 | 6425 | 100 | Minus |
| 3L | 28110227 | 3L | 18588858..18590139 | 16..1300 | 6225 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:44:05 has no hits.
BO01515.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:31 Download gff for
BO01515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 1..1287 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:12 Download gff for
BO01515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 145..1441 | 6..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:33 Download gff for
BO01515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 166..1444 | 22..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:31 Download gff for
BO01515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 145..1441 | 6..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:39 Download gff for
BO01515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 166..1444 | 22..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:39 Download gff for
BO01515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18592326..18593606 | 22..1302 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:33 Download gff for
BO01515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18585426..18586706 | 22..1302 | 99 | | Minus |
BO01515.pep Sequence
Translation from 16 to 1318
> BO01515.pep
MFDEPIISSFVFTNEETTQTFHHQWFSQGQLHECATCYSSIDADEPPSQH
WLRGGEASQGLHLTKQQQAVMDIIEARQIETFFFCDESSKDKLEHFMGET
CARGIPELLRWMFQNNTVAVEFNLACYVNAMDQVLIFQSGSLRADHHYDV
DESVGVVYEMLMQRIENYLNCSSEYGMAECSITRLKVQVKRIRVEADGQS
ADSSVFALPLQLQEEEGLTATTGCSTSEAELASLRSAYLKHFRECNGYFP
PNMRVNLYGLQQCKTTKELYVVPYHISETLQQLPNKNFLILNNIMGQFQR
LHELSTPVNSIERDQTSSPLKDLHCRRCRTQFSRRSKLHIHQKLRCGQDF
SVDSMHADIVEIYEQCLPISRSVFQHACYGITKPKTMMRKGQFVPIECDW
RSESSVKVQHGPCVVISNAQHNSPCKFYASFLDH
BO01515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-PA | 428 | CG4216-PA | 1..428 | 1..428 | 2285 | 100 | Plus |
| CG7271-PA | 427 | CG7271-PA | 1..427 | 1..428 | 2240 | 98.8 | Plus |
| CG6885-PA | 378 | CG6885-PA | 7..377 | 8..385 | 467 | 27.9 | Plus |
