Clone Sequence Records
BO01520.3prime Sequence
909 bp (842 high quality bases) assembled on 2005-11-30
> BO01520.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTTGGAATCAATTTCGGACTTAGCAC
TCATTGCGATCAGCTTATTTTGATGCTGCCTGGAGCGGTAGTGGGTCTTC
AAGTTCGAGTTCCGTGTAAAGGACACTTTGCAGACCTCACAGTGGAAGTT
ACGCTCGCCGGTGTGGACCACCTCGTGCTTGGCCCTCTGGTAGTTCGACT
CGTATCGCTTGTCGCAATAGTTGCACTTGAAGTTCTTTGGTGTTTTCTTG
TTCCGGTGTACCCGGTTTTCGTGGCGCGATCGCATAGTACTGTGCACAAA
ACGCTCGTCGCAGAACTGGCAAGCGTATGGCTTCTCTCCGCGGTGCTTCA
CCCGAATGTGAATGTTCAGGATGTACCTGTTGAACTCCTTTTGTCCGCAC
TCAGGACACTCGAAGGGCTTGACGCCCGAGTGGCGCAGCACGTGCAGATT
AAAGTTGCCCTTGTCGGTGAATTTCTTGCCGCAATGGTCACAGATGTGGA
CCTTTTGGCTTATGTATGTTTTTCGTTTTTTCTTCGCAGGTTTGAGAAAG
TCGGTGTCGTCGTTTTTGGGAGATGATCTCTTGGTGTATTTTCGACGAGG
CTTCTTATCTTCGTCAAGGGCCGATTGACGCGATGTGGCTTCTATATCTG
ACATAGAATCAGCATCTGTATCGCTGTCGCCGTCCTCGTTCTGCCAAAGC
TCGTCGTCGTCTTCCTGTGACTCCTCTTCGTCCTCCTCATTTTGCTGACT
TTCCTCCTCATCTGGCTGTGACTCCTCACATTCCTGTGACTCCTCGCCAT
CATCATGTCCTGTCTTTTTATCCACCATATCCTCATACTCCTGCTNGTGC
TCTTGCTCATCATCCTCCTTACTGAANGGGTATTCGCANGCAATATCTTC
AAATTCCTT
BO01520.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 1320 | CG17802-RA | 460..1317 | 876..19 | 4246 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 508..1398 | 909..19 | 4373 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804041..17804684 | 266..909 | 3127 | 98.9 | Plus |
3R | 32079331 | 3R | 17803533..17803656 | 19..142 | 620 | 100 | Plus |
3R | 32079331 | 3R | 17803856..17803978 | 143..265 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:10:32 has no hits.
BO01520.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:20 Download gff for
BO01520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 427..1320 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:18 Download gff for
BO01520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 427..1320 | 15..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:54 Download gff for
BO01520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 508..1402 | 14..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:27 Download gff for
BO01520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 508..1402 | 14..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:27 Download gff for
BO01520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17803529..17803656 | 14..142 | 98 | <- | Plus |
3R | 17803856..17803978 | 143..265 | 100 | <- | Plus |
3R | 17804041..17804684 | 266..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:54 Download gff for
BO01520.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13629251..13629378 | 14..142 | 98 | <- | Plus |
arm_3R | 13629578..13629700 | 143..265 | 100 | <- | Plus |
arm_3R | 13629763..13630406 | 266..909 | 99 | | Plus |
BO01520.5prime Sequence
891 bp (738 high quality bases) assembled on 2005-11-30
> BO01520.5prime
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTCTCAAACCTGCGAAGAAAAAACGAAAAACATACATAAGCCAAAAG
GTCCACATCTGTGACCATTGCGGCCAGAAATTCACCGACAA
BO01520.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 1320 | CG17802-RA | 1..875 | 17..891 | 4325 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 82..956 | 17..891 | 4345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804236..17804997 | 891..130 | 3780 | 99.7 | Minus |
3R | 32079331 | 3R | 17805055..17805168 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:52:13 has no hits.
BO01520.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:21 Download gff for
BO01520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:19 Download gff for
BO01520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:36 Download gff for
BO01520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..954 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:33 Download gff for
BO01520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..954 | 17..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:33 Download gff for
BO01520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17804238..17804996 | 131..889 | 99 | <- | Minus |
3R | 17805055..17805168 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:36 Download gff for
BO01520.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13629960..13630718 | 131..889 | 99 | <- | Minus |
arm_3R | 13630777..13630890 | 17..130 | 100 | | Minus |
BO01520.complete Sequence
1351 bp (1351 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629529
> BO01520.complete
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTCTCAAACCTGCGAAGAAAAAACGAAAAACATACATAAGCCAAAAG
GTCCACATCTGTGACCATTGCGGCAAGAAATTCACCGACAAGGGCAACTT
TAATCTGCACGTGCTGCGCCACTCGGGCGTCAAGCCCTTCGAGTGTCCTG
AGTGCGGACAAAAGGAGTTCAACAGGTACATCCTGAACATTCACATTCGG
GTGAAGCACCGCGGAGAGAAGCCATACGCTTGCCAGTTCTGCGACGAGCG
TTTTGTGCACAGTACTATGCGATCGCGCCACGAAAACCGGGTACACCGGA
ACAAGAAAACACCAAAGAACTTCAAGTGCAACTATTGCGACAAGCGATAC
GAGTCGAACTACCAGAGGGCCAAGCACGAGGTGGTCCACACCGGCGAGCG
TAACTTCCACTGTGAGGTCTGCAAAGTGTCCTTTACACGGAACTCGAACT
TGAAGACCCACTACCGCTCCAGGCAGCATCAAAATAAGCTGATCGCAATG
AGTGCTAAGTCCGAAATTGATTCCAAAAATAAAGCAAGCTTTCTAGACCA
T
BO01520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1320 | CG17802-PA | 1..1317 | 17..1333 | 6570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 82..1398 | 17..1333 | 6570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804041..17804997 | 1086..130 | 4770 | 99.9 | Minus |
3R | 32079331 | 3R | 17803533..17803656 | 1333..1210 | 620 | 100 | Minus |
3R | 32079331 | 3R | 17803856..17803978 | 1209..1087 | 615 | 100 | Minus |
3R | 32079331 | 3R | 17805055..17805168 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:25 has no hits.
BO01520.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:33 Download gff for
BO01520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 1..1320 | 17..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:14 Download gff for
BO01520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 81..1401 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:15 Download gff for
BO01520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..1389 | 17..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:33 Download gff for
BO01520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 81..1401 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:39 Download gff for
BO01520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..1389 | 17..1324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:39 Download gff for
BO01520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17803542..17803656 | 1210..1324 | 100 | <- | Minus |
3R | 17803856..17803978 | 1087..1209 | 100 | <- | Minus |
3R | 17804041..17804996 | 131..1086 | 99 | <- | Minus |
3R | 17805055..17805168 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:15 Download gff for
BO01520.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13629264..13629378 | 1210..1324 | 100 | <- | Minus |
arm_3R | 13629578..13629700 | 1087..1209 | 100 | <- | Minus |
arm_3R | 13629763..13630718 | 131..1086 | 99 | <- | Minus |
arm_3R | 13630777..13630890 | 17..130 | 100 | | Minus |
BO01520.pep Sequence
Translation from 16 to 1351
> BO01520.pep
MTPQCRLCGDLIYTQNPVNIFDENSKMVRQIALVTGLWLTDHSKMPRNMC
SCCLLSLKSAIAFRQACIKTNNRLTIQRRSVEAKDDGCWADPLSDAHEGL
KINDAEVEQEVLYEVSYADNEGLEEDHDLYKKEEEESEVNENKEFEDIAC
EIPFSKEDDEQEQQQEYEDMVDKKTGHDDGEESQECEESQPDEEESQQNE
EDEEESQEDDDELWQNEDGDSDTDADSMSDIEATSRQSALDEDKKPRRKY
TKRSSPKNDDTDFLKPAKKKRKTYISQKVHICDHCGKKFTDKGNFNLHVL
RHSGVKPFECPECGQKEFNRYILNIHIRVKHRGEKPYACQFCDERFVHST
MRSRHENRVHRNKKTPKNFKCNYCDKRYESNYQRAKHEVVHTGERNFHCE
VCKVSFTRNSNLKTHYRSRQHQNKLIAMSAKSEIDSKNKASFLDH
BO01520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 439 | CG17802-PA | 1..439 | 1..439 | 2381 | 100 | Plus |
CG18764-PA | 409 | CG18764-PA | 1..405 | 1..431 | 602 | 31.7 | Plus |
CG17806-PA | 421 | CG17806-PA | 1..419 | 1..440 | 511 | 29.7 | Plus |
M1BP-PA | 418 | CG9797-PA | 13..405 | 5..439 | 403 | 25.8 | Plus |
CG17803-PB | 587 | CG17803-PB | 85..470 | 4..415 | 370 | 25.9 | Plus |