Clone BO01520 Report

Search the DGRC for BO01520

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG17802-RA
Protein status:BO01520.pep:
Sequenced Size:1351

Clone Sequence Records

BO01520.3prime Sequence

909 bp (842 high quality bases) assembled on 2005-11-30

> BO01520.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTTGGAATCAATTTCGGACTTAGCAC
TCATTGCGATCAGCTTATTTTGATGCTGCCTGGAGCGGTAGTGGGTCTTC
AAGTTCGAGTTCCGTGTAAAGGACACTTTGCAGACCTCACAGTGGAAGTT
ACGCTCGCCGGTGTGGACCACCTCGTGCTTGGCCCTCTGGTAGTTCGACT
CGTATCGCTTGTCGCAATAGTTGCACTTGAAGTTCTTTGGTGTTTTCTTG
TTCCGGTGTACCCGGTTTTCGTGGCGCGATCGCATAGTACTGTGCACAAA
ACGCTCGTCGCAGAACTGGCAAGCGTATGGCTTCTCTCCGCGGTGCTTCA
CCCGAATGTGAATGTTCAGGATGTACCTGTTGAACTCCTTTTGTCCGCAC
TCAGGACACTCGAAGGGCTTGACGCCCGAGTGGCGCAGCACGTGCAGATT
AAAGTTGCCCTTGTCGGTGAATTTCTTGCCGCAATGGTCACAGATGTGGA
CCTTTTGGCTTATGTATGTTTTTCGTTTTTTCTTCGCAGGTTTGAGAAAG
TCGGTGTCGTCGTTTTTGGGAGATGATCTCTTGGTGTATTTTCGACGAGG
CTTCTTATCTTCGTCAAGGGCCGATTGACGCGATGTGGCTTCTATATCTG
ACATAGAATCAGCATCTGTATCGCTGTCGCCGTCCTCGTTCTGCCAAAGC
TCGTCGTCGTCTTCCTGTGACTCCTCTTCGTCCTCCTCATTTTGCTGACT
TTCCTCCTCATCTGGCTGTGACTCCTCACATTCCTGTGACTCCTCGCCAT
CATCATGTCCTGTCTTTTTATCCACCATATCCTCATACTCCTGCTNGTGC
TCTTGCTCATCATCCTCCTTACTGAANGGGTATTCGCANGCAATATCTTC
AAATTCCTT

BO01520.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 1320 CG17802-RA 460..1317 876..19 4246 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 508..1398 909..19 4373 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804041..17804684 266..909 3127 98.9 Plus
3R 32079331 3R 17803533..17803656 19..142 620 100 Plus
3R 32079331 3R 17803856..17803978 143..265 615 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:10:32 has no hits.

BO01520.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:20 Download gff for BO01520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 427..1320 15..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:18 Download gff for BO01520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 427..1320 15..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:43:54 Download gff for BO01520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 508..1402 14..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:27 Download gff for BO01520.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 508..1402 14..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:27 Download gff for BO01520.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17803529..17803656 14..142 98 <- Plus
3R 17803856..17803978 143..265 100 <- Plus
3R 17804041..17804684 266..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:43:54 Download gff for BO01520.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13629251..13629378 14..142 98 <- Plus
arm_3R 13629578..13629700 143..265 100 <- Plus
arm_3R 13629763..13630406 266..909 99   Plus

BO01520.5prime Sequence

891 bp (738 high quality bases) assembled on 2005-11-30

> BO01520.5prime
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTCTCAAACCTGCGAAGAAAAAACGAAAAACATACATAAGCCAAAAG
GTCCACATCTGTGACCATTGCGGCCAGAAATTCACCGACAA

BO01520.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 1320 CG17802-RA 1..875 17..891 4325 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 82..956 17..891 4345 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804236..17804997 891..130 3780 99.7 Minus
3R 32079331 3R 17805055..17805168 130..17 570 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:52:13 has no hits.

BO01520.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:21 Download gff for BO01520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:19 Download gff for BO01520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:36 Download gff for BO01520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..954 17..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:33 Download gff for BO01520.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..954 17..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:33 Download gff for BO01520.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17804238..17804996 131..889 99 <- Minus
3R 17805055..17805168 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:36 Download gff for BO01520.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13629960..13630718 131..889 99 <- Minus
arm_3R 13630777..13630890 17..130 100   Minus

BO01520.complete Sequence

1351 bp (1351 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629529

> BO01520.complete
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTCTCAAACCTGCGAAGAAAAAACGAAAAACATACATAAGCCAAAAG
GTCCACATCTGTGACCATTGCGGCAAGAAATTCACCGACAAGGGCAACTT
TAATCTGCACGTGCTGCGCCACTCGGGCGTCAAGCCCTTCGAGTGTCCTG
AGTGCGGACAAAAGGAGTTCAACAGGTACATCCTGAACATTCACATTCGG
GTGAAGCACCGCGGAGAGAAGCCATACGCTTGCCAGTTCTGCGACGAGCG
TTTTGTGCACAGTACTATGCGATCGCGCCACGAAAACCGGGTACACCGGA
ACAAGAAAACACCAAAGAACTTCAAGTGCAACTATTGCGACAAGCGATAC
GAGTCGAACTACCAGAGGGCCAAGCACGAGGTGGTCCACACCGGCGAGCG
TAACTTCCACTGTGAGGTCTGCAAAGTGTCCTTTACACGGAACTCGAACT
TGAAGACCCACTACCGCTCCAGGCAGCATCAAAATAAGCTGATCGCAATG
AGTGCTAAGTCCGAAATTGATTCCAAAAATAAAGCAAGCTTTCTAGACCA
T

BO01520.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1320 CG17802-PA 1..1317 17..1333 6570 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 82..1398 17..1333 6570 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804041..17804997 1086..130 4770 99.9 Minus
3R 32079331 3R 17803533..17803656 1333..1210 620 100 Minus
3R 32079331 3R 17803856..17803978 1209..1087 615 100 Minus
3R 32079331 3R 17805055..17805168 130..17 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:14:25 has no hits.

BO01520.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:33 Download gff for BO01520.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 1..1320 17..1337 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:14 Download gff for BO01520.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 81..1401 17..1338 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:15 Download gff for BO01520.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..1389 17..1324 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:33 Download gff for BO01520.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 81..1401 17..1338 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:39 Download gff for BO01520.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..1389 17..1324 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:39 Download gff for BO01520.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17803542..17803656 1210..1324 100 <- Minus
3R 17803856..17803978 1087..1209 100 <- Minus
3R 17804041..17804996 131..1086 99 <- Minus
3R 17805055..17805168 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:15 Download gff for BO01520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13629264..13629378 1210..1324 100 <- Minus
arm_3R 13629578..13629700 1087..1209 100 <- Minus
arm_3R 13629763..13630718 131..1086 99 <- Minus
arm_3R 13630777..13630890 17..130 100   Minus

BO01520.pep Sequence

Translation from 16 to 1351

> BO01520.pep
MTPQCRLCGDLIYTQNPVNIFDENSKMVRQIALVTGLWLTDHSKMPRNMC
SCCLLSLKSAIAFRQACIKTNNRLTIQRRSVEAKDDGCWADPLSDAHEGL
KINDAEVEQEVLYEVSYADNEGLEEDHDLYKKEEEESEVNENKEFEDIAC
EIPFSKEDDEQEQQQEYEDMVDKKTGHDDGEESQECEESQPDEEESQQNE
EDEEESQEDDDELWQNEDGDSDTDADSMSDIEATSRQSALDEDKKPRRKY
TKRSSPKNDDTDFLKPAKKKRKTYISQKVHICDHCGKKFTDKGNFNLHVL
RHSGVKPFECPECGQKEFNRYILNIHIRVKHRGEKPYACQFCDERFVHST
MRSRHENRVHRNKKTPKNFKCNYCDKRYESNYQRAKHEVVHTGERNFHCE
VCKVSFTRNSNLKTHYRSRQHQNKLIAMSAKSEIDSKNKASFLDH

BO01520.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 439 CG17802-PA 1..439 1..439 2381 100 Plus
CG18764-PA 409 CG18764-PA 1..405 1..431 602 31.7 Plus
CG17806-PA 421 CG17806-PA 1..419 1..440 511 29.7 Plus
M1BP-PA 418 CG9797-PA 13..405 5..439 403 25.8 Plus
CG17803-PB 587 CG17803-PB 85..470 4..415 370 25.9 Plus