Clone BO01526 Report

Search the DGRC for BO01526

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptslbo-RA
Protein status:BO01526.pep:
Sequenced Size:1381

Clone Sequence Records

BO01526.3prime Sequence

833 bp (773 high quality bases) assembled on 2005-11-30

> BO01526.3prime
ATGGTCTAGAAAGCTTGCCAGCGAGTGTTCGTTGGTGTTGAGGAAGCTGC
GGCAGACGCGGCTCACTTCGGGATTGGCGTGGTTCATTAGCTGCATGTAG
ATCTGCTTGTGTAGCTGCAGCTCGTTGGTCATCTCACCAAGCTGCCGAAT
GAGGGCGTCCTTCTCCTTGAGCAGGCTCTTCACGCGCTCCTCCACCTCGC
GGGAGCGCACCTTAGCCTTCTCCCGGCTCTTGCGCACCGCTATGTTGTTC
CGCTCCCGCCGCCTGCGGTACTCATCCGTGCCCTTGTCCACATGCTTGTT
GCTGTGCTTGCGGTGCTGCTGCTGTTGCTGGTGCTGCTGATGCTGCTGCT
GCGCGTGCAGCTTGCTGTGCTGCTTGAGCAGATTGTGTGCTCCTGCTGCG
GCCGCCAGGTGGGGCAGGTTGTGGTGCGCCAGGACGTTGGCCGTCGTCAG
GTTGGTGAACTGGCTGCCGTTGCTGCTGCCCGTGCTGCCGTTGCTCCCGT
TGCTGCTGGGCGTGGTGTTGCCTCCGTTGAGTGGGTTTCCGCCCCCGGTC
AAGCCATTCGCCCCCGATCCGTAGCCGTTGTACAGGCCTGCTCCATTGCC
CATGAAGGCGGCCTGCTGGCTAGCCGCCTCCTGCAGGTGCCGCCTGTACT
CGGGGTCGATGGGCTCCTCCTTGATCGTGCTGGAGTCGGAGCCCACGGAG
CTGTTCTCGTCGCTGGAATTGTTGTAGGTGGCGTGCACGGGCTGCGGCAT
GTAGGCCAGGGCGCCTCCTGCTCCGCCACCGCCTCCCCTGCCCCCGTAGC
CGTGCTGGTTCCGCANGGTCTGCTGCTGCAGGA

BO01526.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4354-PA 1350 slbo-RA 533..1347 833..19 4056 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-RB 2581 CG4354-RB 865..1679 833..19 4064 99.9 Minus
slbo-RA 2786 CG4354-RA 1070..1884 833..19 4064 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24332424..24333238 19..833 4064 99.9 Plus
Blast to na_te.dros performed 2015-02-11 21:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 3109..3195 709..623 111 58.6 Minus

BO01526.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:27 Download gff for BO01526.3prime
Subject Subject Range Query Range Percent Splice Strand
slbo-PA 534..1350 18..832 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:28 Download gff for BO01526.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4354-PA 534..1350 18..832 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:16 Download gff for BO01526.3prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1071..1888 13..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:06 Download gff for BO01526.3prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1071..1888 13..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:06 Download gff for BO01526.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24332420..24333237 13..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:16 Download gff for BO01526.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20219943..20220760 13..832 99   Plus

BO01526.5prime Sequence

819 bp (724 high quality bases) assembled on 2005-11-30

> BO01526.5prime
GAAGTTATCAGTCGACATGCTGAACATGGAGTCGCCGCAGATGTACGCCG
ATGCCGTTCAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTG
CAGCAGGCCACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCA
GCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC
AACAACAGCAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAAC
AACACGTCGCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCA
GATGCAACAGGTCGCCGCATTGGGCAGCAACAACAACCTGCTGCAGAAGC
AGATGCTGCAGCAGTACTCCACTCAGACGGACCTGGACGAGCTGACCACC
CAGGAGATCACGCTCGACCTGCAGCACCTGATAGACGACCAGTTCAGGGA
CACGGAAACGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGAC
TCTCGGCCACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTC
CTGCAGCAGCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGG
CGGTGGCGGAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACG
CCACCTACAACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCC
AGCACGATCAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCA
GGAGGCGGCTAGCCAGCAGGCCGCCTTCATGGGCAATGGAGCAGGGCTGT
ACAACGGCTACGGATCGGG

BO01526.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4354-PA 1350 slbo-RA 1..803 17..819 3990 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-RB 2581 CG4354-RB 333..1135 17..819 4000 99.9 Plus
slbo-RA 2786 CG4354-RA 538..1340 17..819 4000 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24332968..24333770 819..17 4000 99.9 Minus
Blast to na_te.dros performed 2015-02-12 16:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 3109..3195 673..759 111 58.6 Plus

BO01526.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:28 Download gff for BO01526.5prime
Subject Subject Range Query Range Percent Splice Strand
slbo-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:30 Download gff for BO01526.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4354-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:38 Download gff for BO01526.5prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 538..1340 17..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:39 Download gff for BO01526.5prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 538..1340 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:39 Download gff for BO01526.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24332968..24333770 17..819 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:38 Download gff for BO01526.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20220491..20221293 17..819 99   Minus

BO01526.complete Sequence

1381 bp (1381 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629530

> BO01526.complete
GAAGTTATCAGTCGACATGCTGAACATGGAGTCGCCGCAGATGTACGCCG
ATGCCGTTCAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTG
CAGCAGGCCACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCA
GCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC
AACAACAGCAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAAC
AACACGTCGCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCA
GATGCAACAGGTCGCCGCATTGGGCAGCAACAACAACCTGCTGCAGAAGC
AGATGCTGCAGCAGTACTCCACTCAGACGGACCTGGACGAGCTGACCACC
CAGGAGATCACGCTCGACCTGCAGCACCTGATAGACGACCAGTTCAGGGA
CACGGAAACGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGAC
TCTCGGCCACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTC
CTGCAGCAGCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGG
CGGTGGCGGAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACG
CCACCTACAACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCC
AGCACGATCAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCA
GGAGGCGGCTAGCCAGCAGGCCGCCTTCATGGGCAATGGAGCAGGCCTGT
ACAACGGCTACGGATCGGGGGCGAATGGCTTGACCGGGGGCGGAAACCCA
CTCAACGGAGGCAACACCACGCCCAGCAGCAACGGGAGCAACGGCAGCAC
GGGCAGCAGCAACGGCAGCCAGTTCACCAACCTGACGACGGCCAACGTCC
TGGCGCACCACAACCTGCCCCACCTGGCGGCCGCAGCAGGAGCACACAAT
CTGCTCAAGCAGCACAGCAAGCTGCACGCGCAGCAGCAGCATCAGCAGCA
CCAGCAACAGCAGCAGCACCGCAAGCACAGCAACAAGCATGTGGACAAGG
GCACGGATGAGTACCGCAGGCGGCGGGAGCGGAACAACATAGCGGTGCGC
AAGAGCCGGGAGAAGGCTAAGGTGCGCTCCCGCGAGGTGGAGGAGCGCGT
GAAGAGCCTGCTCAAGGAGAAGGACGCCCTCATTCGGCAGCTTGGTGAGA
TGACCAACGAGCTGCAGCTACACAAGCAGATCTACATGCAGCTAATGAAC
CACGCCAATCCCGAAGTGAGCCGCGTCTGCCGCAGCTTCCTCAACACCAA
CGAACACTCGCTGGCAAGCTTTCTAGACCAT

BO01526.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-RB 1350 CG4354-PB 1..1347 17..1363 6735 100 Plus
slbo-RA 1350 CG4354-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-RB 2581 CG4354-RB 333..1679 17..1363 6735 100 Plus
slbo-RA 2786 CG4354-RA 538..1884 17..1363 6735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24332424..24333770 1363..17 6735 100 Minus
Blast to na_te.dros performed 2014-11-27 14:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 3109..3195 673..759 111 58.6 Plus

BO01526.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:24 Download gff for BO01526.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1..1350 17..1364 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:03 Download gff for BO01526.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 537..1887 17..1369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:44 Download gff for BO01526.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 538..1884 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:24 Download gff for BO01526.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 537..1887 17..1369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:34 Download gff for BO01526.complete
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 538..1884 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:34 Download gff for BO01526.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24332420..24333770 17..1365 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:44 Download gff for BO01526.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20219943..20221293 17..1365 99   Minus

BO01526.pep Sequence

Translation from 16 to 1381

> BO01526.pep
MLNMESPQMYADAVQTLAQLDLKKEPPLQQATIGQITLTAMSTAQQQQQQ
QQQQQQQQQQQQQQQQQQPQQQTTDANNNTSQDAALLVKQHAMHQMQQVA
ALGSNNNLLQKQMLQQYSTQTDLDELTTQEITLDLQHLIDDQFRDTETLG
IFSDMVTSPGGLSATLPPSGMVSAAAKVLQQQTLRNQHGYGGRGGGGGAG
GALAYMPQPVHATYNNSSDENSSVGSDSSTIKEEPIDPEYRRHLQEAASQ
QAAFMGNGAGLYNGYGSGANGLTGGGNPLNGGNTTPSSNGSNGSTGSSNG
SQFTNLTTANVLAHHNLPHLAAAAGAHNLLKQHSKLHAQQQHQQHQQQQQ
HRKHSNKHVDKGTDEYRRRRERNNIAVRKSREKAKVRSREVEERVKSLLK
EKDALIRQLGEMTNELQLHKQIYMQLMNHANPEVSRVCRSFLNTNEHSLA
SFLDH

BO01526.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-PB 449 CG4354-PB 1..449 1..449 2308 100 Plus
slbo-PA 449 CG4354-PA 1..449 1..449 2308 100 Plus
CG43347-PD 2652 CG43347-PD 1497..1890 23..357 185 26 Plus
CG43347-PB 2666 CG43347-PB 1511..1904 23..357 185 26 Plus
CG43347-PC 2684 CG43347-PC 1529..1922 23..357 185 26 Plus