Clone Sequence Records
BO01526.3prime Sequence
833 bp (773 high quality bases) assembled on 2005-11-30
> BO01526.3prime
ATGGTCTAGAAAGCTTGCCAGCGAGTGTTCGTTGGTGTTGAGGAAGCTGC
GGCAGACGCGGCTCACTTCGGGATTGGCGTGGTTCATTAGCTGCATGTAG
ATCTGCTTGTGTAGCTGCAGCTCGTTGGTCATCTCACCAAGCTGCCGAAT
GAGGGCGTCCTTCTCCTTGAGCAGGCTCTTCACGCGCTCCTCCACCTCGC
GGGAGCGCACCTTAGCCTTCTCCCGGCTCTTGCGCACCGCTATGTTGTTC
CGCTCCCGCCGCCTGCGGTACTCATCCGTGCCCTTGTCCACATGCTTGTT
GCTGTGCTTGCGGTGCTGCTGCTGTTGCTGGTGCTGCTGATGCTGCTGCT
GCGCGTGCAGCTTGCTGTGCTGCTTGAGCAGATTGTGTGCTCCTGCTGCG
GCCGCCAGGTGGGGCAGGTTGTGGTGCGCCAGGACGTTGGCCGTCGTCAG
GTTGGTGAACTGGCTGCCGTTGCTGCTGCCCGTGCTGCCGTTGCTCCCGT
TGCTGCTGGGCGTGGTGTTGCCTCCGTTGAGTGGGTTTCCGCCCCCGGTC
AAGCCATTCGCCCCCGATCCGTAGCCGTTGTACAGGCCTGCTCCATTGCC
CATGAAGGCGGCCTGCTGGCTAGCCGCCTCCTGCAGGTGCCGCCTGTACT
CGGGGTCGATGGGCTCCTCCTTGATCGTGCTGGAGTCGGAGCCCACGGAG
CTGTTCTCGTCGCTGGAATTGTTGTAGGTGGCGTGCACGGGCTGCGGCAT
GTAGGCCAGGGCGCCTCCTGCTCCGCCACCGCCTCCCCTGCCCCCGTAGC
CGTGCTGGTTCCGCANGGTCTGCTGCTGCAGGA
BO01526.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4354-PA | 1350 | slbo-RA | 533..1347 | 833..19 | 4056 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slbo-RB | 2581 | CG4354-RB | 865..1679 | 833..19 | 4064 | 99.9 | Minus |
slbo-RA | 2786 | CG4354-RA | 1070..1884 | 833..19 | 4064 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24332424..24333238 | 19..833 | 4064 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 21:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 709..623 | 111 | 58.6 | Minus |
BO01526.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:27 Download gff for
BO01526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-PA | 534..1350 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:28 Download gff for
BO01526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4354-PA | 534..1350 | 18..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:16 Download gff for
BO01526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 1071..1888 | 13..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:06 Download gff for
BO01526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 1071..1888 | 13..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:06 Download gff for
BO01526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24332420..24333237 | 13..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:16 Download gff for
BO01526.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20219943..20220760 | 13..832 | 99 | | Plus |
BO01526.5prime Sequence
819 bp (724 high quality bases) assembled on 2005-11-30
> BO01526.5prime
GAAGTTATCAGTCGACATGCTGAACATGGAGTCGCCGCAGATGTACGCCG
ATGCCGTTCAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTG
CAGCAGGCCACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCA
GCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC
AACAACAGCAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAAC
AACACGTCGCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCA
GATGCAACAGGTCGCCGCATTGGGCAGCAACAACAACCTGCTGCAGAAGC
AGATGCTGCAGCAGTACTCCACTCAGACGGACCTGGACGAGCTGACCACC
CAGGAGATCACGCTCGACCTGCAGCACCTGATAGACGACCAGTTCAGGGA
CACGGAAACGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGAC
TCTCGGCCACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTC
CTGCAGCAGCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGG
CGGTGGCGGAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACG
CCACCTACAACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCC
AGCACGATCAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCA
GGAGGCGGCTAGCCAGCAGGCCGCCTTCATGGGCAATGGAGCAGGGCTGT
ACAACGGCTACGGATCGGG
BO01526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4354-PA | 1350 | slbo-RA | 1..803 | 17..819 | 3990 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slbo-RB | 2581 | CG4354-RB | 333..1135 | 17..819 | 4000 | 99.9 | Plus |
slbo-RA | 2786 | CG4354-RA | 538..1340 | 17..819 | 4000 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24332968..24333770 | 819..17 | 4000 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 16:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 673..759 | 111 | 58.6 | Plus |
BO01526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:28 Download gff for
BO01526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:30 Download gff for
BO01526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4354-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:38 Download gff for
BO01526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 538..1340 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:39 Download gff for
BO01526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 538..1340 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:39 Download gff for
BO01526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24332968..24333770 | 17..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:38 Download gff for
BO01526.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20220491..20221293 | 17..819 | 99 | | Minus |
BO01526.complete Sequence
1381 bp (1381 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629530
> BO01526.complete
GAAGTTATCAGTCGACATGCTGAACATGGAGTCGCCGCAGATGTACGCCG
ATGCCGTTCAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTG
CAGCAGGCCACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCA
GCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC
AACAACAGCAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAAC
AACACGTCGCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCA
GATGCAACAGGTCGCCGCATTGGGCAGCAACAACAACCTGCTGCAGAAGC
AGATGCTGCAGCAGTACTCCACTCAGACGGACCTGGACGAGCTGACCACC
CAGGAGATCACGCTCGACCTGCAGCACCTGATAGACGACCAGTTCAGGGA
CACGGAAACGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGAC
TCTCGGCCACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTC
CTGCAGCAGCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGG
CGGTGGCGGAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACG
CCACCTACAACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCC
AGCACGATCAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCA
GGAGGCGGCTAGCCAGCAGGCCGCCTTCATGGGCAATGGAGCAGGCCTGT
ACAACGGCTACGGATCGGGGGCGAATGGCTTGACCGGGGGCGGAAACCCA
CTCAACGGAGGCAACACCACGCCCAGCAGCAACGGGAGCAACGGCAGCAC
GGGCAGCAGCAACGGCAGCCAGTTCACCAACCTGACGACGGCCAACGTCC
TGGCGCACCACAACCTGCCCCACCTGGCGGCCGCAGCAGGAGCACACAAT
CTGCTCAAGCAGCACAGCAAGCTGCACGCGCAGCAGCAGCATCAGCAGCA
CCAGCAACAGCAGCAGCACCGCAAGCACAGCAACAAGCATGTGGACAAGG
GCACGGATGAGTACCGCAGGCGGCGGGAGCGGAACAACATAGCGGTGCGC
AAGAGCCGGGAGAAGGCTAAGGTGCGCTCCCGCGAGGTGGAGGAGCGCGT
GAAGAGCCTGCTCAAGGAGAAGGACGCCCTCATTCGGCAGCTTGGTGAGA
TGACCAACGAGCTGCAGCTACACAAGCAGATCTACATGCAGCTAATGAAC
CACGCCAATCCCGAAGTGAGCCGCGTCTGCCGCAGCTTCCTCAACACCAA
CGAACACTCGCTGGCAAGCTTTCTAGACCAT
BO01526.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slbo-RB | 1350 | CG4354-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
slbo-RA | 1350 | CG4354-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slbo-RB | 2581 | CG4354-RB | 333..1679 | 17..1363 | 6735 | 100 | Plus |
slbo-RA | 2786 | CG4354-RA | 538..1884 | 17..1363 | 6735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24332424..24333770 | 1363..17 | 6735 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 673..759 | 111 | 58.6 | Plus |
BO01526.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:24 Download gff for
BO01526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 1..1350 | 17..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:03 Download gff for
BO01526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 537..1887 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:44 Download gff for
BO01526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 538..1884 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:24 Download gff for
BO01526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 537..1887 | 17..1369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:34 Download gff for
BO01526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 538..1884 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:34 Download gff for
BO01526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24332420..24333770 | 17..1365 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:44 Download gff for
BO01526.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20219943..20221293 | 17..1365 | 99 | | Minus |
BO01526.pep Sequence
Translation from 16 to 1381
> BO01526.pep
MLNMESPQMYADAVQTLAQLDLKKEPPLQQATIGQITLTAMSTAQQQQQQ
QQQQQQQQQQQQQQQQQQPQQQTTDANNNTSQDAALLVKQHAMHQMQQVA
ALGSNNNLLQKQMLQQYSTQTDLDELTTQEITLDLQHLIDDQFRDTETLG
IFSDMVTSPGGLSATLPPSGMVSAAAKVLQQQTLRNQHGYGGRGGGGGAG
GALAYMPQPVHATYNNSSDENSSVGSDSSTIKEEPIDPEYRRHLQEAASQ
QAAFMGNGAGLYNGYGSGANGLTGGGNPLNGGNTTPSSNGSNGSTGSSNG
SQFTNLTTANVLAHHNLPHLAAAAGAHNLLKQHSKLHAQQQHQQHQQQQQ
HRKHSNKHVDKGTDEYRRRRERNNIAVRKSREKAKVRSREVEERVKSLLK
EKDALIRQLGEMTNELQLHKQIYMQLMNHANPEVSRVCRSFLNTNEHSLA
SFLDH
BO01526.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slbo-PB | 449 | CG4354-PB | 1..449 | 1..449 | 2308 | 100 | Plus |
slbo-PA | 449 | CG4354-PA | 1..449 | 1..449 | 2308 | 100 | Plus |
CG43347-PD | 2652 | CG43347-PD | 1497..1890 | 23..357 | 185 | 26 | Plus |
CG43347-PB | 2666 | CG43347-PB | 1511..1904 | 23..357 | 185 | 26 | Plus |
CG43347-PC | 2684 | CG43347-PC | 1529..1922 | 23..357 | 185 | 26 | Plus |