Clone Sequence Records
BO01534.3prime Sequence
862 bp (822 high quality bases) assembled on 2005-11-30
> BO01534.3prime
ATGGTCTAGAAAGCTTGCTTTCTTTTCGTTGTCAATTTTACTTTTGTCCA
ACGACGACGACACCATCCCTCCGCCGTTCGAAGGGTACAGCTTTTCCAAG
TAGTTTAATGACTCGTTTAAAAATGTCTGAAAAGCGTGCAGAACAGCCAT
AATCGCGGGCGATCCGAATCCGTGCGTTATCAGGGAGAAGTGCGTCAAGT
GGCGCTGCATCGATGGTTCCAGCAGATGCTGTGATCTCGTCCCAAAGTGG
GTCGTTCGATCTTGGCTCAGGATCTGCATAAGCTCTTTTGTTATCTGCTG
GGAGTGGAGAATGAGCTCTTTTCGACGGTACGAGTCCTGCGGCTCCGTTT
GGTGGCGCACGATGTACTCGGCCAGCTGCCTGGCGGGGAATTCGGTTTCG
CAAACGAAGTGAAAGTCCTTGGCCAGGTGCGTTGCCTCCCCCTCAACCAA
GGATGTCAGTAGGGTGACGTTGGCCGCTTTCCGTCTACCGGCGGGTAGAT
TGAGGCCGATCTTTTCCAGCTTCTCCCTCAACAGGCGACCTCCGTTCTTG
CTCTTAGCCCTTCGGAGCACTCCGCCCAGCAGGGAGGCGTTCAAGCACTC
GGGCGGCGAGAGTCGACGCTGTACTTCGGCTATGGTGACCTTGTATTTCG
AGGTGCTCGATAGGAGACTGAGGCGACCAGGAACTGCACAGAATACCTCG
CTGGGCGAACCCGATCCAATGTTCCCGGCTTCTTTTCCGCTTTTCATGCT
CTTTATGAGCGGCAAGTCTGACATGAACGCCACATTGTCGTCGAGGGCAG
GAGCTTGGACATCATCGACGGCGTTTTGAAGGGCTTGGTGCAGCGCCAGG
GACTCGTGCTCG
BO01534.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7807-PB | 1398 | AP-2-RB | 552..1395 | 862..19 | 4220 | 100 | Minus |
CG7807-PA | 1386 | AP-2-RA | 540..1383 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RF | 1823 | CG7807-RF | 582..1425 | 862..19 | 4220 | 100 | Minus |
TfAP-2-RE | 2012 | CG7807-RE | 771..1614 | 862..19 | 4220 | 100 | Minus |
TfAP-2-RD | 2237 | CG7807-RD | 996..1839 | 862..19 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21612243..21612509 | 561..295 | 1335 | 100 | Minus |
3L | 28110227 | 3L | 21611995..21612185 | 749..559 | 955 | 100 | Minus |
3L | 28110227 | 3L | 21612610..21612780 | 297..127 | 855 | 100 | Minus |
3L | 28110227 | 3L | 21611238..21611351 | 862..749 | 570 | 100 | Minus |
3L | 28110227 | 3L | 21612841..21612951 | 129..19 | 555 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 930..1003 | 563..492 | 112 | 64.9 | Minus |
BO01534.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:39 Download gff for
BO01534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-PA | 540..1386 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:46 Download gff for
BO01534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7807-PA | 540..1386 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:26 Download gff for
BO01534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RD | 996..1839 | 19..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:39 Download gff for
BO01534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RD | 996..1839 | 19..862 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:39 Download gff for
BO01534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21612613..21612780 | 127..294 | 100 | -> | Minus |
3L | 21612844..21612951 | 19..126 | 100 | | Minus |
3L | 21611238..21611350 | 750..862 | 100 | -> | Minus |
3L | 21611995..21612184 | 560..749 | 100 | -> | Minus |
3L | 21612245..21612509 | 295..559 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:26 Download gff for
BO01534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21604338..21604450 | 750..862 | 100 | -> | Minus |
arm_3L | 21605095..21605284 | 560..749 | 100 | -> | Minus |
arm_3L | 21605345..21605609 | 295..559 | 100 | -> | Minus |
arm_3L | 21605713..21605880 | 127..294 | 100 | -> | Minus |
arm_3L | 21605944..21606051 | 19..126 | 100 | | Minus |
BO01534.5prime Sequence
866 bp (690 high quality bases) assembled on 2005-11-30
> BO01534.5prime
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAAACGCTCCCTG
CTGGGGCGAGTGCTCC
BO01534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7807-PB | 1398 | AP-2-RB | 1..824 | 17..840 | 4120 | 100 | Plus |
CG7807-PA | 1386 | AP-2-RA | 45..812 | 73..840 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RB | 2219 | CG7807-RB | 425..1276 | 15..866 | 4185 | 99.5 | Plus |
TfAP-2-RD | 2237 | CG7807-RD | 425..1294 | 15..866 | 3995 | 97.5 | Plus |
TfAP-2-RC | 1805 | CG7807-RC | 69..862 | 73..866 | 3895 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21609418..21609649 | 73..304 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 21611143..21611351 | 473..681 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 21609716..21609886 | 302..472 | 855 | 100 | Plus |
3L | 28110227 | 3L | 21611995..21612180 | 681..866 | 855 | 97.3 | Plus |
3L | 28110227 | 3L | 21599280..21599339 | 15..74 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:47:53 has no hits.
BO01534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:40 Download gff for
BO01534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-PB | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:47 Download gff for
BO01534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7807-PB | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:33:23 Download gff for
BO01534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 422..1276 | 12..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:30 Download gff for
BO01534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 422..1276 | 12..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:30 Download gff for
BO01534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21609719..21609886 | 305..472 | 100 | -> | Plus |
3L | 21611143..21611350 | 473..680 | 100 | -> | Plus |
3L | 21611995..21612180 | 681..866 | 97 | | Plus |
3L | 21599277..21599338 | 12..73 | 98 | -> | Plus |
3L | 21609419..21609649 | 74..304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:33:23 Download gff for
BO01534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21592377..21592438 | 12..73 | 98 | -> | Plus |
arm_3L | 21602519..21602749 | 74..304 | 100 | -> | Plus |
arm_3L | 21602819..21602986 | 305..472 | 100 | -> | Plus |
arm_3L | 21604243..21604450 | 473..680 | 100 | -> | Plus |
arm_3L | 21605095..21605280 | 681..866 | 97 | | Plus |
BO01534.complete Sequence
1429 bp (1429 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629531
> BO01534.complete
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTG
CTGGGCGGAGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGTCGCCTGTT
GAGGGAGAAGCTGGAAAAGATCGGCCTCAATCTACCCGCCGGTAGACGGA
AAGCGGCCAACGTCACCCTACTGACATCCTTGGTTGAGGGGGAGGCAACG
CACCTGGCCAAGGACTTTCACTTCGTTTGCGAAACCGAATTCCCCGCCAG
GCAGCTGGCCGAGTACATCGTGCGCCACCAAACGGAGCCGCAGGACTCGT
ACCGTCGAAAAGAGCTCATTCTCCACTCCCAGCAGATAACAAAAGAGCTT
ATGCAGATCCTGAGCCAAGATCGAACGACCCACTTTGGGACGAGATCACA
GCATCTGCTGGAACCATCGATGCAGCGCCACTTGACGCACTTCTCCCTGA
TAACGCACGGATTCGGATCGCCCGCGATTATGGCTGTTCTGCACGCTTTT
CAGACATTTTTAAACGAGTCATTAAACTACTTGGAAAAGCTGTACCCTTC
GAACGGCGGAGGGATGGTGTCGTCGTCGTTGGACAAAAGTAAAATTGACA
ACGAAAAGAAAGCAAGCTTTCTAGACCAT
BO01534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RB | 1398 | CG7807-PB | 1..1395 | 17..1411 | 6975 | 100 | Plus |
TfAP-2-RD | 1416 | CG7807-PD | 1..1413 | 17..1411 | 6760 | 98.7 | Plus |
TfAP-2-RC | 1380 | CG7807-PC | 39..1377 | 73..1411 | 6695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RB | 2219 | CG7807-RB | 425..1821 | 15..1411 | 6985 | 100 | Plus |
TfAP-2-RD | 2237 | CG7807-RD | 425..1839 | 15..1411 | 6770 | 98.7 | Plus |
TfAP-2-RC | 1805 | CG7807-RC | 69..1407 | 73..1411 | 6695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21612243..21612509 | 869..1135 | 1335 | 100 | Plus |
3L | 28110227 | 3L | 21609418..21609649 | 73..304 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 21611143..21611351 | 473..681 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 21611995..21612185 | 681..871 | 955 | 100 | Plus |
3L | 28110227 | 3L | 21609716..21609886 | 302..472 | 855 | 100 | Plus |
3L | 28110227 | 3L | 21612610..21612780 | 1133..1303 | 855 | 100 | Plus |
3L | 28110227 | 3L | 21612841..21612951 | 1301..1411 | 555 | 100 | Plus |
3L | 28110227 | 3L | 21599280..21599339 | 15..74 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 930..1003 | 867..938 | 112 | 64.9 | Plus |
BO01534.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:26 Download gff for
BO01534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-RB | 1..1398 | 17..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:31 Download gff for
BO01534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-RB | 425..1819 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:06 Download gff for
BO01534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 427..1821 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:27 Download gff for
BO01534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-RB | 420..1819 | 12..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:39 Download gff for
BO01534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 427..1821 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:39 Download gff for
BO01534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21611143..21611350 | 473..680 | 100 | -> | Plus |
3L | 21611995..21612184 | 681..870 | 100 | -> | Plus |
3L | 21612245..21612509 | 871..1135 | 100 | -> | Plus |
3L | 21612613..21612780 | 1136..1303 | 100 | -> | Plus |
3L | 21612844..21612951 | 1304..1413 | 98 | | Plus |
3L | 21599282..21599338 | 17..73 | 100 | -> | Plus |
3L | 21609719..21609886 | 305..472 | 100 | -> | Plus |
3L | 21609419..21609649 | 74..304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:06 Download gff for
BO01534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21605713..21605880 | 1136..1303 | 100 | -> | Plus |
arm_3L | 21605944..21606051 | 1304..1413 | 98 | | Plus |
arm_3L | 21605095..21605284 | 681..870 | 100 | -> | Plus |
arm_3L | 21605345..21605609 | 871..1135 | 100 | -> | Plus |
arm_3L | 21602519..21602749 | 74..304 | 100 | -> | Plus |
arm_3L | 21592382..21592438 | 17..73 | 100 | -> | Plus |
arm_3L | 21602819..21602986 | 305..472 | 100 | -> | Plus |
arm_3L | 21604243..21604450 | 473..680 | 100 | -> | Plus |
BO01534.pep Sequence
Translation from 16 to 1429
> BO01534.pep
MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP
ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA
LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG
HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD
DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL
LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE
KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY
IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP
SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM
VSSSLDKSKIDNEKKASFLDH
BO01534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-PB | 465 | CG7807-PB | 1..465 | 1..465 | 2437 | 100 | Plus |
TfAP-2-PD | 471 | CG7807-PD | 1..471 | 1..465 | 2420 | 98.7 | Plus |
TfAP-2-PC | 459 | CG7807-PC | 8..459 | 14..465 | 2332 | 98.9 | Plus |
TfAP-2-PA | 461 | CG7807-PA | 14..461 | 18..465 | 2331 | 99.6 | Plus |
TfAP-2-PF | 465 | CG7807-PF | 8..465 | 14..465 | 2315 | 97.6 | Plus |