Clone BO01534 Report

Search the DGRC for BO01534

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptAP-2-RB
Protein status:BO01534.pep:
Sequenced Size:1429

Clone Sequence Records

BO01534.3prime Sequence

862 bp (822 high quality bases) assembled on 2005-11-30

> BO01534.3prime
ATGGTCTAGAAAGCTTGCTTTCTTTTCGTTGTCAATTTTACTTTTGTCCA
ACGACGACGACACCATCCCTCCGCCGTTCGAAGGGTACAGCTTTTCCAAG
TAGTTTAATGACTCGTTTAAAAATGTCTGAAAAGCGTGCAGAACAGCCAT
AATCGCGGGCGATCCGAATCCGTGCGTTATCAGGGAGAAGTGCGTCAAGT
GGCGCTGCATCGATGGTTCCAGCAGATGCTGTGATCTCGTCCCAAAGTGG
GTCGTTCGATCTTGGCTCAGGATCTGCATAAGCTCTTTTGTTATCTGCTG
GGAGTGGAGAATGAGCTCTTTTCGACGGTACGAGTCCTGCGGCTCCGTTT
GGTGGCGCACGATGTACTCGGCCAGCTGCCTGGCGGGGAATTCGGTTTCG
CAAACGAAGTGAAAGTCCTTGGCCAGGTGCGTTGCCTCCCCCTCAACCAA
GGATGTCAGTAGGGTGACGTTGGCCGCTTTCCGTCTACCGGCGGGTAGAT
TGAGGCCGATCTTTTCCAGCTTCTCCCTCAACAGGCGACCTCCGTTCTTG
CTCTTAGCCCTTCGGAGCACTCCGCCCAGCAGGGAGGCGTTCAAGCACTC
GGGCGGCGAGAGTCGACGCTGTACTTCGGCTATGGTGACCTTGTATTTCG
AGGTGCTCGATAGGAGACTGAGGCGACCAGGAACTGCACAGAATACCTCG
CTGGGCGAACCCGATCCAATGTTCCCGGCTTCTTTTCCGCTTTTCATGCT
CTTTATGAGCGGCAAGTCTGACATGAACGCCACATTGTCGTCGAGGGCAG
GAGCTTGGACATCATCGACGGCGTTTTGAAGGGCTTGGTGCAGCGCCAGG
GACTCGTGCTCG

BO01534.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7807-PB 1398 AP-2-RB 552..1395 862..19 4220 100 Minus
CG7807-PA 1386 AP-2-RA 540..1383 862..19 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RF 1823 CG7807-RF 582..1425 862..19 4220 100 Minus
TfAP-2-RE 2012 CG7807-RE 771..1614 862..19 4220 100 Minus
TfAP-2-RD 2237 CG7807-RD 996..1839 862..19 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21612243..21612509 561..295 1335 100 Minus
3L 28110227 3L 21611995..21612185 749..559 955 100 Minus
3L 28110227 3L 21612610..21612780 297..127 855 100 Minus
3L 28110227 3L 21611238..21611351 862..749 570 100 Minus
3L 28110227 3L 21612841..21612951 129..19 555 100 Minus
Blast to na_te.dros performed 2015-02-10 15:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 930..1003 563..492 112 64.9 Minus

BO01534.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:39 Download gff for BO01534.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-2-PA 540..1386 16..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:46 Download gff for BO01534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7807-PA 540..1386 16..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:26 Download gff for BO01534.3prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RD 996..1839 19..862 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:39 Download gff for BO01534.3prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RD 996..1839 19..862 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:39 Download gff for BO01534.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21612613..21612780 127..294 100 -> Minus
3L 21612844..21612951 19..126 100   Minus
3L 21611238..21611350 750..862 100 -> Minus
3L 21611995..21612184 560..749 100 -> Minus
3L 21612245..21612509 295..559 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:26 Download gff for BO01534.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21604338..21604450 750..862 100 -> Minus
arm_3L 21605095..21605284 560..749 100 -> Minus
arm_3L 21605345..21605609 295..559 100 -> Minus
arm_3L 21605713..21605880 127..294 100 -> Minus
arm_3L 21605944..21606051 19..126 100   Minus

BO01534.5prime Sequence

866 bp (690 high quality bases) assembled on 2005-11-30

> BO01534.5prime
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAAACGCTCCCTG
CTGGGGCGAGTGCTCC

BO01534.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7807-PB 1398 AP-2-RB 1..824 17..840 4120 100 Plus
CG7807-PA 1386 AP-2-RA 45..812 73..840 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RB 2219 CG7807-RB 425..1276 15..866 4185 99.5 Plus
TfAP-2-RD 2237 CG7807-RD 425..1294 15..866 3995 97.5 Plus
TfAP-2-RC 1805 CG7807-RC 69..862 73..866 3895 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21609418..21609649 73..304 1160 100 Plus
3L 28110227 3L 21611143..21611351 473..681 1045 100 Plus
3L 28110227 3L 21609716..21609886 302..472 855 100 Plus
3L 28110227 3L 21611995..21612180 681..866 855 97.3 Plus
3L 28110227 3L 21599280..21599339 15..74 300 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:47:53 has no hits.

BO01534.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:40 Download gff for BO01534.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2-PB 1..850 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:47 Download gff for BO01534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7807-PB 1..850 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:33:23 Download gff for BO01534.5prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 422..1276 12..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:30 Download gff for BO01534.5prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 422..1276 12..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:30 Download gff for BO01534.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21609719..21609886 305..472 100 -> Plus
3L 21611143..21611350 473..680 100 -> Plus
3L 21611995..21612180 681..866 97   Plus
3L 21599277..21599338 12..73 98 -> Plus
3L 21609419..21609649 74..304 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:33:23 Download gff for BO01534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21592377..21592438 12..73 98 -> Plus
arm_3L 21602519..21602749 74..304 100 -> Plus
arm_3L 21602819..21602986 305..472 100 -> Plus
arm_3L 21604243..21604450 473..680 100 -> Plus
arm_3L 21605095..21605280 681..866 97   Plus

BO01534.complete Sequence

1429 bp (1429 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629531

> BO01534.complete
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTG
CTGGGCGGAGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGTCGCCTGTT
GAGGGAGAAGCTGGAAAAGATCGGCCTCAATCTACCCGCCGGTAGACGGA
AAGCGGCCAACGTCACCCTACTGACATCCTTGGTTGAGGGGGAGGCAACG
CACCTGGCCAAGGACTTTCACTTCGTTTGCGAAACCGAATTCCCCGCCAG
GCAGCTGGCCGAGTACATCGTGCGCCACCAAACGGAGCCGCAGGACTCGT
ACCGTCGAAAAGAGCTCATTCTCCACTCCCAGCAGATAACAAAAGAGCTT
ATGCAGATCCTGAGCCAAGATCGAACGACCCACTTTGGGACGAGATCACA
GCATCTGCTGGAACCATCGATGCAGCGCCACTTGACGCACTTCTCCCTGA
TAACGCACGGATTCGGATCGCCCGCGATTATGGCTGTTCTGCACGCTTTT
CAGACATTTTTAAACGAGTCATTAAACTACTTGGAAAAGCTGTACCCTTC
GAACGGCGGAGGGATGGTGTCGTCGTCGTTGGACAAAAGTAAAATTGACA
ACGAAAAGAAAGCAAGCTTTCTAGACCAT

BO01534.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RB 1398 CG7807-PB 1..1395 17..1411 6975 100 Plus
TfAP-2-RD 1416 CG7807-PD 1..1413 17..1411 6760 98.7 Plus
TfAP-2-RC 1380 CG7807-PC 39..1377 73..1411 6695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RB 2219 CG7807-RB 425..1821 15..1411 6985 100 Plus
TfAP-2-RD 2237 CG7807-RD 425..1839 15..1411 6770 98.7 Plus
TfAP-2-RC 1805 CG7807-RC 69..1407 73..1411 6695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21612243..21612509 869..1135 1335 100 Plus
3L 28110227 3L 21609418..21609649 73..304 1160 100 Plus
3L 28110227 3L 21611143..21611351 473..681 1045 100 Plus
3L 28110227 3L 21611995..21612185 681..871 955 100 Plus
3L 28110227 3L 21609716..21609886 302..472 855 100 Plus
3L 28110227 3L 21612610..21612780 1133..1303 855 100 Plus
3L 28110227 3L 21612841..21612951 1301..1411 555 100 Plus
3L 28110227 3L 21599280..21599339 15..74 300 100 Plus
Blast to na_te.dros performed 2014-11-28 08:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 930..1003 867..938 112 64.9 Plus

BO01534.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:26 Download gff for BO01534.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..1398 17..1414 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:31 Download gff for BO01534.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 425..1819 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:06 Download gff for BO01534.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 427..1821 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:27 Download gff for BO01534.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 420..1819 12..1411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:39 Download gff for BO01534.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 427..1821 17..1413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:39 Download gff for BO01534.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21611143..21611350 473..680 100 -> Plus
3L 21611995..21612184 681..870 100 -> Plus
3L 21612245..21612509 871..1135 100 -> Plus
3L 21612613..21612780 1136..1303 100 -> Plus
3L 21612844..21612951 1304..1413 98   Plus
3L 21599282..21599338 17..73 100 -> Plus
3L 21609719..21609886 305..472 100 -> Plus
3L 21609419..21609649 74..304 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:06 Download gff for BO01534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21605713..21605880 1136..1303 100 -> Plus
arm_3L 21605944..21606051 1304..1413 98   Plus
arm_3L 21605095..21605284 681..870 100 -> Plus
arm_3L 21605345..21605609 871..1135 100 -> Plus
arm_3L 21602519..21602749 74..304 100 -> Plus
arm_3L 21592382..21592438 17..73 100 -> Plus
arm_3L 21602819..21602986 305..472 100 -> Plus
arm_3L 21604243..21604450 473..680 100 -> Plus

BO01534.pep Sequence

Translation from 16 to 1429

> BO01534.pep
MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP
ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA
LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG
HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD
DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL
LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE
KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY
IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP
SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM
VSSSLDKSKIDNEKKASFLDH

BO01534.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-PB 465 CG7807-PB 1..465 1..465 2437 100 Plus
TfAP-2-PD 471 CG7807-PD 1..471 1..465 2420 98.7 Plus
TfAP-2-PC 459 CG7807-PC 8..459 14..465 2332 98.9 Plus
TfAP-2-PA 461 CG7807-PA 14..461 18..465 2331 99.6 Plus
TfAP-2-PF 465 CG7807-PF 8..465 14..465 2315 97.6 Plus