Clone BO01536 Report

Search the DGRC for BO01536

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG17829-RA
Protein status:BO01536.pep: full length peptide match
Sequenced Size:1435

Clone Sequence Records

BO01536.3prime Sequence

914 bp (747 high quality bases) assembled on 2005-11-30

> BO01536.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCTCTGCTAGGCTGGGCAGGGAGATTA
CCACTTCACCCATCAGCTGCGCCTCGTTCGGATCATTCGAGACGATGATG
CGCTCGAACTCGGTATTTGTGGGATCCACGATCTCGTAGCAGGATCCTGT
GCCCGGTTTCGCTAGCGAGTCGTTCACCTGCGGCGACAGTATTTGCTGGG
TCACCTCCAAGCTCTCGAGGCGCGTCGTCTCGAGGCGGTAGAACCCGTTC
TCGTCCACCCGGTAGGTGAATCTTTTGTGGCCCGAAGGCAGGCGGAAGCC
GTGCTTCTTCATAAGGTGAGCGGAGAGCGACTTGCCGCTCTTGAAGAAGC
GCTCGCAGCAGTGGCAGGCGTACAGAATGGGATTGTTGCCGTGCACCTCG
AGGAAGTGCCGTCGCATCTGCGTGTAGGTGCGTACAGAATAATGACAGTC
GGGATGCTCGCACTGGTGCACCGTCTTCGAGTGGACAATCTGAACGTGCT
TGGCCAGATCCGACTCCCGAACGCAGCGCGTGTCACACTCACTACACTTG
AGCGGTTTGTCCTTGAGGTGGCGGTACCGAATGTGGGTGGTCAGCGAGCT
GGCCGAGCTGCAGGTCATGTCGCACATGGTGCACTTGTAGCAGTTAACGT
GTCGCACCACGTGGCTCTTCAGCAGCTTCTTGGTGGCAAAGAACTTGAAG
CATTGGGCGCACTGGAAGCTGTTTGTGTTGTTTTCCGGCTGGCGTCTAAG
GTGATCAAAGAGCGTAGTCTTGGTGCGGAACAGTTCGCCGCAGTGGAAGC
AAGCCACCTGCTTCTTGTTGGAGTGGGTACTGATGTGCTCGATGAGGCGG
TACTTGTTGCCCATGTGCTTGTGGCACATGGCCCAGGTGCACATCGTCTT
GGGCCGCTCGTCTT

BO01536.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-PA 1404 CG17829-RA 506..1401 914..19 4455 99.8 Minus
CG17829-PC 1347 CG17829-RC 449..1344 914..19 4455 99.8 Minus
CG17829-PB 1404 CG17829-RB 506..1401 914..19 4455 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 2197 CG17829-RB 574..1469 914..19 4465 99.9 Minus
CG17829-RC 2199 CG17829-RC 576..1471 914..19 4465 99.9 Minus
CG17829-RA 2256 CG17829-RA 633..1528 914..19 4465 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 626898..627288 409..19 1955 100 Minus
X 23542271 X 626504..626820 725..409 1585 100 Minus
X 23542271 X 626174..626362 914..726 930 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 02:10:53 has no hits.

BO01536.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:42 Download gff for BO01536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PA 506..1404 16..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:51 Download gff for BO01536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PB 506..1404 16..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:44:01 Download gff for BO01536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 633..1528 19..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:48:22 Download gff for BO01536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 633..1528 19..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:48:22 Download gff for BO01536.3prime
Subject Subject Range Query Range Percent Splice Strand
X 626504..626820 409..725 100 -> Minus
X 626174..626362 726..914 99 -> Minus
X 626899..627288 19..408 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:44:01 Download gff for BO01536.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 520207..520395 726..914 99 -> Minus
arm_X 520537..520853 409..725 100 -> Minus
arm_X 520932..521321 19..408 100   Minus

BO01536.5prime Sequence

858 bp (709 high quality bases) assembled on 2005-11-30

> BO01536.5prime
GAAGTTATCAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTC
AGCCGCCTGGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGA
TGGCGCGACTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCA
TATTGGGGATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGG
CGCATGCGGAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTC
CGCACCGAAAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTA
CTACTTGAACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGG
AAATCCCCGCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCT
CTGGGCCAGAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGT
TTCGATTGTGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGT
ACGACATACAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAAC
TGGGCCATGTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCA
CATCAGTACCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCG
AACTGTTCCGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCG
GAAAACAACACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGC
CACCAAGAAGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGCTACA
AGTGCACCATGTGCGACATGACCTGCAGCTCGGCCAGCTCGCTGACCACC
ACATTCGG

BO01536.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-PA 1404 CG17829-RA 1..834 17..850 4170 100 Plus
CG17829-PB 1404 CG17829-RB 1..834 17..850 4170 100 Plus
CG17829-PC 1347 CG17829-RC 247..777 320..850 2655 100 Plus
CG17829-PC 1347 CG17829-RC 1..250 17..266 1250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 2197 CG17829-RB 68..911 16..858 4195 99.9 Plus
CG17829-RA 2256 CG17829-RA 127..970 16..858 4195 99.9 Plus
CG17829-RC 2199 CG17829-RC 374..913 320..858 2675 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 625668..626362 16..710 3475 100 Plus
X 23542271 X 626504..626643 711..850 700 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:24:24 has no hits.

BO01536.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:43 Download gff for BO01536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PA 1..843 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:53 Download gff for BO01536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PB 1..843 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:38 Download gff for BO01536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 127..970 16..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:10:04 Download gff for BO01536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 127..970 16..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:10:04 Download gff for BO01536.5prime
Subject Subject Range Query Range Percent Splice Strand
X 625668..626362 16..710 100 -> Plus
X 626504..626652 711..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:38 Download gff for BO01536.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 519701..520395 16..710 100 -> Plus
arm_X 520537..520685 711..858 99   Plus

BO01536.complete Sequence

1435 bp (1435 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629532

> BO01536.complete
GAAGTTATCAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTC
AGCCGCCTGGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGA
TGGCGCGACTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCA
TATTGGGGATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGG
CGCATGCGGAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTC
CGCACCGAAAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTA
CTACTTGAACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGG
AAATCCCCGCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCT
CTGGGCCAGAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGT
TTCGATTGTGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGT
ACGACATACAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAAC
TGGGCCATGTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCA
CATCAGTACCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCG
AACTGTTCCGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCG
GAAAACAACACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGC
CACCAAGAAGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGCTACA
AGTGCACCATGTGCGACATGACCTGCAGCTCGGCCAGCTCGCTGACCACC
CACATTCGGTACCGCCACCTCAAGGACAAACCGCTCAAGTGTAGTGAGTG
TGACACGCGCTGCGTTCGGGAGTCGGATCTGGCCAAGCACGTTCAGATTG
TCCACTCGAAGACGGTGCACCAGTGCGAGCATCCCGACTGTCATTATTCT
GTACGCACCTACACGCAGATGCGACGGCACTTCCTCGAGGTGCACGGCAA
CAATCCCATTCTGTACGCCTGCCACTGCTGCGAGCGCTTCTTCAAGAGCG
GCAAGTCGCTCTCCGCTCACCTTATGAAGAAGCACGGCTTCCGCCTGCCT
TCGGGCCACAAAAGATTCACCTACCGGGTGGACGAGAACGGGTTCTACCG
CCTCGAGACGACGCGCCTCGAGAGCTTGGAGGTGACCCAGCAAATACTGT
CGCCGCAGGTGAACGACTCGCTAGCGAAACCGGGCACAGGATCCTGCTAC
GAGATCGTGGATCCCACAAATACCGAGTTCGAGCGCATCATCGTCTCGAA
TGATCCGAACGAGGCGCAGCTGATGGGTGAAGTGGTAATCTCCCTGCCCA
GCCTAGCAGAGGAGCTGGCAAGCTTTCTAGACCAT

BO01536.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 1404 CG17829-PB 1..1401 17..1417 7005 100 Plus
CG17829-RA 1404 CG17829-PA 1..1401 17..1417 7005 100 Plus
CG17829-RC 1347 CG17829-PC 247..1344 320..1417 5490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 2197 CG17829-RB 68..1469 16..1417 7010 100 Plus
CG17829-RA 2256 CG17829-RA 127..1528 16..1417 7010 100 Plus
CG17829-RC 2199 CG17829-RC 374..1471 320..1417 5490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 625668..626362 16..710 3475 100 Plus
X 23542271 X 626898..627288 1027..1417 1955 100 Plus
X 23542271 X 626504..626820 711..1027 1585 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:37:26 has no hits.

BO01536.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:34:04 Download gff for BO01536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RB 1..1404 17..1420 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:32 Download gff for BO01536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RB 46..1447 16..1417 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:30 Download gff for BO01536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 128..1528 17..1419 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:34:05 Download gff for BO01536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RB 46..1447 16..1417 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:50 Download gff for BO01536.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 128..1528 17..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:50 Download gff for BO01536.complete
Subject Subject Range Query Range Percent Splice Strand
X 625669..626362 17..710 100 -> Plus
X 626504..626820 711..1027 100 -> Plus
X 626899..627288 1028..1419 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:30 Download gff for BO01536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 519702..520395 17..710 100 -> Plus
arm_X 520537..520853 711..1027 100 -> Plus
arm_X 520932..521321 1028..1419 99   Plus

BO01536.pep Sequence

Translation from 16 to 1435

> BO01536.pep
MLRPQSSVPAPQPPGKRKKPAELELTCGWRDCQEICTGEWSLNGHIGDHL
EHYAKAQDDRGAHAEHTEHQCTWNSCDFRTENQVEFERHSYYHGYYLNLL
LQGKLECDLHPEIPACTAPARLMEKLPALGQNFRCGWTDCEREFVSIVEF
QDHIVKHALFEYDIQKTPEDERPKTMCNWAMCHKHMGNKYRLIEHISTHS
NKKQVACFHCGELFRTKTTLFDHLRRQPENNTNSFQCAQCFKFFATKKLL
KSHVVRHVNCYKCTMCDMTCSSASSLTTHIRYRHLKDKPLKCSECDTRCV
RESDLAKHVQIVHSKTVHQCEHPDCHYSVRTYTQMRRHFLEVHGNNPILY
ACHCCERFFKSGKSLSAHLMKKHGFRLPSGHKRFTYRVDENGFYRLETTR
LESLEVTQQILSPQVNDSLAKPGTGSCYEIVDPTNTEFERIIVSNDPNEA
QLMGEVVISLPSLAEELASFLDH

BO01536.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-PB 467 CG17829-PB 1..467 1..467 2598 100 Plus
CG17829-PA 467 CG17829-PA 1..467 1..467 2598 100 Plus
CG17829-PC 448 CG17829-PC 1..448 1..467 2462 95.9 Plus
crol-PH 686 CG14938-PH 211..438 133..385 253 27.5 Plus
crol-PB 891 CG14938-PB 355..643 63..385 253 25.4 Plus
crol-PH 686 CG14938-PH 187..371 181..369 197 26.3 Plus