Clone Sequence Records
BO01537.3prime Sequence
813 bp (812 high quality bases) assembled on 2005-11-30
> BO01537.3prime
ATGGTCTAGAAAGCTTGCGTGGGCCATGGTTGTGTGTTGGATGACGGAGG
CGCAGTTCCTCAAGTTGGTCAGAGCTGCGGCAGCAATGCTTTCCTCCTCC
GTGAGACCATGTTCCACAATCTGAAGCCGTCCGTATCCCGCAGATGAGGC
GGAGGAGCTGGAGTCCGAGAGGTAGTCGTTGTCATAGTCGTAGTTCTCCC
TGGCATTCGATCCCACCACGTAGACTCCCTCATCGGAGTGCGAACTGCTG
GCGGAGGAGGAGGTGGACACCGCCTGGTTAAAGTGAAAACTGCCTGTGAT
AGTTGTGGTGGTGGGCTTCATTTCCAACTGTTTTTCCGCTGGCTTTTCCT
TTTTCTGATGGGTCAGCTGGTGCTTCCTCAGGTAGGCGGCTCTCTTAAAC
TTCTTGCCGCACTCCTGGCAATCGAAGGCCAGTTCCTCCTCCGACTTTTT
CTCCACCTGCTGCTGTTTCTCCGGCTGGTTGGTGGTATTGCGATTCTCCT
TTTTAGACGCCTCCTTCCTCGGCTTGTGCCACCGGCGATGGGAGGCCAAG
TTAGCAGGACAATTGAACTGCTTGCCGCACTCGGGACACCGGTACTCCAG
CAGGACGATGCAGGCGCACCTGTGCCGGGCCAGGCCGAAGGCGTCCTCGA
ACTTGATCTTGCACAGTCGGCAGACATAGTCCCCGATCACGTTCTTGATG
GCGGCCAGTTCCGCCTTGGTCTCCTCCGTGATCTCGACTATGTTGTACTT
GGGGTCAATGTCGCCGTTGCTGTACTGCATCGATCCATCGGTGATGTCCT
CGAGCGGTCGGAT
BO01537.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13906-PA | 1410 | nerfin-1-RA | 613..1407 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nerfin-1-RA | 3208 | CG13906-RA | 799..1593 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 909910..910704 | 813..19 | 3975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:52:30 has no hits.
BO01537.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:44 Download gff for
BO01537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13906-PA | 613..1410 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:54 Download gff for
BO01537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13906-PA | 613..1410 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:57:54 Download gff for
BO01537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 799..1597 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:38:00 Download gff for
BO01537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 799..1597 | 15..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:38:00 Download gff for
BO01537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 909910..910708 | 15..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:57:54 Download gff for
BO01537.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 909910..910708 | 15..813 | 99 | | Minus |
BO01537.5prime Sequence
778 bp (776 high quality bases) assembled on 2005-11-30
> BO01537.5prime
GAAGTTATCAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAG
CCCCCGCGGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATC
CAGTTGCAGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGT
GGCCTCGCTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCA
GGTGCGAAATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCC
AGCAGCGATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAA
TACGAGTGCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGG
AGCTGCCGGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGT
AAATTGAGCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAA
GGAGGAGGAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCG
TCAAAGTGGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCG
GGAAAGCCCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGA
GACCAGTTCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCA
CCGATGGATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAAC
ATAGTCGAGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAA
CGTGATCGGGGACTATGTCTGCCGACTG
BO01537.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13906-PA | 1410 | nerfin-1-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nerfin-1-RA | 3208 | CG13906-RA | 186..948 | 16..778 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 909297..910059 | 16..778 | 3815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:52:40 has no hits.
BO01537.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:45 Download gff for
BO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13906-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:31:55 Download gff for
BO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13906-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:40 Download gff for
BO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 178..948 | 7..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:55 Download gff for
BO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 178..948 | 7..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:55 Download gff for
BO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 909289..910059 | 7..778 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:40 Download gff for
BO01537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 909289..910059 | 7..778 | 99 | | Plus |
BO01537.complete Sequence
1441 bp (1441 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629533
> BO01537.complete
GAAGTTATCAGTCGACATGGCCCAGATACAGACACCGATACCGATTCCAG
CCCCCGCGGAGCCCATTGAAAAGCTCAGCCACCCGCACAGCATTGGCATC
CAGTTGCAGCACAAGGGGATGCCCCATGGCCTGGGCCTGCTGACCACAGT
GGCCTCGCTGCCCCCCAAGTACCGCAGTCGATATCTGAACCTGAAAACCA
GGTGCGAAATACCGCTGGATCTAACGCTGAAGCTTCCCTCACCACTGCCC
AGCAGCGATGTGCCCATGGCGGCCACATTCGCGGAGGTCTATAGCGAAAA
TACGAGTGCTAGTTCCAGCGAGGTGCAGGGGGAGGTGACCAAGGTGGAGG
AGCTGCCGGTGAAGCCCCCAACACCACCGCAGAGTCCAGCAGGGAAGCGT
AAATTGAGCCGGGAGAGCTATGACGACGAGCCGGCTAAAATGGCCAAAAA
GGAGGAGGAGGTTCCGGTGGAAACAGTAGAATCCACACCAGCGAAACCCG
TCAAAGTGGCAGAATCTGCGCCTAAAACCAACAAGGCCTCCACTTCCTCG
GGAAAGCCCTCCCGCAATAAAGCCACCCGCAAGCTGAAGTTCGATGAGGA
GACCAGTTCCCCCGTCTCGGGCACCGTCATCCGACCGCTCGAGGACATCA
CCGATGGATCGATGCAGTACAGCAACGGCGACATTGACCCCAAGTACAAC
ATAGTCGAGATCACGGAGGAGACCAAGGCGGAACTGGCCGCCATCAAGAA
CGTGATCGGGGACTATGTCTGCCGACTGTGCAAGATCAAGTTCGAGGACG
CCTTCGGCCTGGCCCGGCACAGGTGCGCCTGCATCGTCCTGCTGGAGTAC
CGGTGTCCCGAGTGCGGCAAGCAGTTCAATTGTCCTGCTAACTTGGCCTC
CCATCGCCGGTGGCACAAGCCGAGGAAGGAGGCGTCTAAAAAGGAGAATC
GCAATACCACCAACCAGCCGGAGAAACAGCAGCAGGTGGAGAAAAAGTCG
GAGGAGGAACTGGCCTTCGATTGCCAGGAGTGCGGCAAGAAGTTTAAGAG
AGCCGCCTACCTGAGGAAGCACCAGCTGACCCATCAGAAAAAGGAAAAGC
CAGCGGAAAAACAGTTGGAAATGAAGCCCACCACCACAACTATCACAGGC
AGTTTTCACTTTAACCAGGCGGTGTCCACCTCCTCCTCCGCCAGCAGTTC
GCACTCCGATGAGGGAGTCTACGTGGTGGGATCGAATGCCAGGGAGAACT
ACGACTATGACAACGACTACCTCTCGGACTCCAGCTCCTCCGCCTCATCT
GCGGGATACGGACGGCTTCAGATTGTGGAACATGGTCTCACGGAGGAGGA
AAGCATTGCTGCCGCAGCTCTGACCAACTTGAGGAACTGCGCCTCCGTCA
TCCAACACACAACCATGGCCCACGCAAGCTTTCTAGACCAT
BO01537.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nerfin-1-RA | 1410 | CG13906-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nerfin-1-RA | 3208 | CG13906-RA | 186..1593 | 16..1423 | 7040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 909297..910704 | 16..1423 | 7040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:53:37 has no hits.
BO01537.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:28 Download gff for
BO01537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 1..1410 | 17..1426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:16:07 Download gff for
BO01537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 151..1570 | 7..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:48 Download gff for
BO01537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 187..1593 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:28 Download gff for
BO01537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 151..1570 | 7..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:33 Download gff for
BO01537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nerfin-1-RA | 187..1593 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:33 Download gff for
BO01537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 909298..910704 | 17..1425 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:48 Download gff for
BO01537.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 909298..910704 | 17..1425 | 99 | | Plus |
BO01537.pep Sequence
Translation from 16 to 1441
> BO01537.pep
MAQIQTPIPIPAPAEPIEKLSHPHSIGIQLQHKGMPHGLGLLTTVASLPP
KYRSRYLNLKTRCEIPLDLTLKLPSPLPSSDVPMAATFAEVYSENTSASS
SEVQGEVTKVEELPVKPPTPPQSPAGKRKLSRESYDDEPAKMAKKEEEVP
VETVESTPAKPVKVAESAPKTNKASTSSGKPSRNKATRKLKFDEETSSPV
SGTVIRPLEDITDGSMQYSNGDIDPKYNIVEITEETKAELAAIKNVIGDY
VCRLCKIKFEDAFGLARHRCACIVLLEYRCPECGKQFNCPANLASHRRWH
KPRKEASKKENRNTTNQPEKQQQVEKKSEEELAFDCQECGKKFKRAAYLR
KHQLTHQKKEKPAEKQLEMKPTTTTITGSFHFNQAVSTSSSASSSHSDEG
VYVVGSNARENYDYDNDYLSDSSSSASSAGYGRLQIVEHGLTEEESIAAA
ALTNLRNCASVIQHTTMAHASFLDH
BO01537.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nerfin-1-PA | 469 | CG13906-PA | 1..469 | 1..469 | 2434 | 100 | Plus |
| nerfin-2-PA | 695 | CG12809-PA | 334..567 | 90..357 | 482 | 39.3 | Plus |
| nerfin-2-PB | 775 | CG12809-PB | 334..567 | 90..357 | 482 | 39.3 | Plus |
