Clone BO01540 Report

Search the DGRC for BO01540

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptDoc2-RA
Protein status:BO01540.pep: full length peptide match
Sequenced Size:1441

Clone Sequence Records

BO01540.3prime Sequence

829 bp (805 high quality bases) assembled on 2005-11-30

> BO01540.3prime
ATGGTCTAGAAAGCTTGCACTTCCTCCCCCCAAAATGGCCGATATGCTGA
AGCCCTTGCTCCTTGTAGATGGTTGTTCCAGTGGCTGTTCCTGCGTAGAC
TGCTCCAACGTGCTCGTTTCACTGCCCACATCCAGTTCGAGTTCTTCGGC
TCCCGACTCATCGGAAATGAGATCCGCGCCAGAAACGCCTGGTGGAAGGT
TCAGGCCAGGATGTGGGCCCAAACCCGCCTGTAGCATCGCTGCTGGTGGA
TACATAGGTGAGGCCTGAATCGCTCCTCCATACTCATGGGGTCTCCCAAA
GTAGGTACATGCCAAATCCACAAGCGATGGCCTCAGCAGGCTCTGCATAT
TCTGCTGAAAGTGCTGCATAAAAACGCTGGAGGCACTCCTCGCCTGGAGG
GGATGCGGATGCGAATGCGAATGTAGATGGGGCGGTGGAGAGCCCAGGGC
CAAAGAACTGGCGCCAGGCACCGACTGATCGTCCAGCGATGATGATAAGG
AGCAGGCTGAGCCATTTGATCTCAGGCGCTTGATTTGCGGACCATCCGAA
TCGCCGATCGACGATGTTCCTCCGGCTGTCTCACCGCCTCCTTTCGTTGG
CGACATGTCAGACTCGGATTGGGACTGAGAATGGGATAGTGACGGCGACT
GATCTTGATCCTCGCCCGTTGGCGATGAAGACATCTTGCGTTTGCAGCGC
GATTGTCCCGTTTCGCGGAAGCCCTTGGCAAACGGATTGTTGTCGATCTT
CAGCTTGGTGATGCGATCGTTCTGGTAGGCTGTCACGGCCACGAACTCCG
TCTCGGCGAAACACAAGGCCTGTTTGTGG

BO01540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5187-PB 1410 Doc2-RB 616..1407 810..19 3935 99.8 Minus
CG5187-PA 1410 Doc2-RA 616..1407 810..19 3935 99.8 Minus
CG5133-PA 1176 Doc1-RA 631..744 804..691 220 87.7 Minus
CG5093-PA 1275 Doc3-RA 670..719 765..716 175 94 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 957..1762 824..19 3970 99.6 Minus
Doc1-RB 1339 CG5133-RB 602..722 811..691 365 86.8 Minus
Doc1-RA 1526 CG5133-RA 789..909 811..691 365 86.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9012869..9013624 19..774 3765 99.9 Plus
3L 28110227 3L 9044342..9044425 774..691 270 88.1 Minus
3L 28110227 3L 9006361..9006452 774..683 265 85.9 Minus
3L 28110227 3L 9014492..9014544 772..824 205 92.5 Plus
2L 23513712 2L 5466038..5466111 786..713 190 83.8 Minus
Blast to na_te.dros performed on 2015-02-12 05:52:52 has no hits.

BO01540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:48 Download gff for BO01540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PB 598..1410 18..829 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:00 Download gff for BO01540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PA 598..1410 18..829 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:42 Download gff for BO01540.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 953..1762 19..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:44 Download gff for BO01540.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 953..1762 19..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:44 Download gff for BO01540.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9012869..9013621 19..771 99 <- Plus
3L 9014492..9014548 772..829 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:42 Download gff for BO01540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9007592..9007648 772..829 94   Plus
arm_3L 9005969..9006721 19..771 99 <- Plus

BO01540.5prime Sequence

745 bp (695 high quality bases) assembled on 2005-11-30

> BO01540.5prime
GAAGTTATCAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCA
TGCAGCAGCACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGC
ATACCAGATCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGT
GATCATGCCACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGA
ACGACGATCTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATC
ACCAAGAGTGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGG
CTTGGAGGACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTG
GCGACTGCCGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGA
GCCGAGCCGCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGC
CACCGGTGCCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGT
TGACCAATAACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATG
CACAAGTATCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCA
GATTCCCTGGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCG
TGGCCGTGACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGAT
CACAATCCGTTTGCCAGGGGCTTCCGCGAAACGGGGACATCGCGC

BO01540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5187-PB 1410 Doc2-RB 1..719 17..735 3520 99.5 Plus
CG5187-PA 1410 Doc2-RA 1..719 17..735 3520 99.5 Plus
CG5133-PA 1176 Doc1-RA 312..461 319..468 475 92.6 Plus
CG5093-PA 1275 Doc3-RA 312..446 319..453 275 88.1 Plus
CG5093-PA 1275 Doc3-RA 493..587 500..594 250 90.5 Plus
CG5133-PA 1176 Doc1-RA 631..704 638..711 195 90.5 Plus
CG5133-PA 1176 Doc1-RA 211..279 218..286 170 89.8 Plus
CG5133-PA 1176 Doc1-RA 52..101 68..117 150 92 Plus
CG5093-PA 1275 Doc3-RA 235..278 242..285 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 355..1084 16..745 3560 99.3 Plus
Doc1-RA 1526 CG5133-RA 173..887 24..729 1370 80.1 Plus
Doc1-RB 1339 CG5133-RB 145..700 174..729 1265 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9014708..9014977 532..263 1350 100 Minus
3L 28110227 3L 9017929..9018088 264..105 800 100 Minus
3L 28110227 3L 9043385..9043655 262..532 710 84.1 Plus
3L 28110227 3L 9014492..9014629 670..533 690 100 Minus
3L 28110227 3L 9005813..9006034 303..524 495 81.5 Plus
3L 28110227 3L 9018801..9018892 107..16 460 100 Minus
3L 28110227 3L 9006155..9006296 529..670 410 85.9 Plus
3L 28110227 3L 9013547..9013624 745..668 300 92.3 Minus
3L 28110227 3L 9041547..9041639 24..116 240 83.9 Plus
3L 28110227 3L 9043731..9043861 540..670 220 77.9 Plus
3L 28110227 3L 9044342..9044403 668..729 205 88.7 Plus
2L 23513712 2L 5466038..5466111 656..729 190 83.8 Plus
Blast to na_te.dros performed on 2015-02-12 10:28:34 has no hits.

BO01540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:49 Download gff for BO01540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PB 1..729 17..745 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:01 Download gff for BO01540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PA 1..729 17..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:09 Download gff for BO01540.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 350..1084 9..745 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:45 Download gff for BO01540.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 350..1084 9..745 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:45 Download gff for BO01540.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9013547..9013621 671..745 93 <- Minus
3L 9014492..9014629 533..670 100 <- Minus
3L 9014708..9014975 265..532 100 <- Minus
3L 9017929..9018085 108..264 100 <- Minus
3L 9018801..9018895 9..107 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:09 Download gff for BO01540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9011029..9011185 108..264 100 <- Minus
arm_3L 9006647..9006721 671..745 93 <- Minus
arm_3L 9007592..9007729 533..670 100 <- Minus
arm_3L 9007808..9008075 265..532 100 <- Minus
arm_3L 9011901..9011995 9..107 95   Minus

BO01540.complete Sequence

1441 bp (1441 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629534

> BO01540.complete
GAAGTTATCAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCA
TGCAGCAGCACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGC
ATACCAGATCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGT
GATCATGCCACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGA
ACGACGATCTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATC
ACCAAGAGTGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGG
CTTGGAGGACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTG
GCGACTGCCGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGA
GCCGAGCCGCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGC
CACCGGTGCCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGT
TGACCAATAACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATG
CACAAGTATCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCA
GATTCCCTGGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCG
TGGCCGTGACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGAC
AACAATCCGTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGCAA
ACGCAAGATGTCTTCATCGCCAACGGGCGAGGATCAAGATCAGTCGCCGT
CACTATCCCATTCTCAGTCCCAATCCGAGTCTGACATGTCGCCAACGAAA
GGAGGCGGTGAGACAGCCGGAGGAACATCGTCGATCGGCGATTCGGATGG
TCCGCAAATCAAGCGCCTGAGATCAAATGGCTCAGCCTGCTCCTTATCAT
CATCGCTGGACGATCAGTCGGTGCCTGGCGCCAGTTCTTTGGCCCTGGGC
TCTCCACCGCCCCATCTACATTCGCATTCGCATCCGCATCCCCTCCAGGC
GAGGAGTGCCTCCAGCGTTTTTATGCAGCACTTTCAGCAGAATATGCAGA
GCCTGCTGAGGCCATCGCTTGTGGATTTGGCATGTACCTACTTTGGGAGA
CCCCATGAGTATGGAGGAGCGATTCAGGCCTCACCTATGTATCCACCAGC
AGCGATGCTACAGGCGGGTTTGGGCCCACATCCTGGCCTGAACCTTCCAC
CAGGCGTTTCTGGCGCGGATCTCATTTCCGATGAGTCGGGAGCCGAAGAA
CTCGAACTGGATGTGGGCAGTGAAACGAGCACGTTGGAGCAGTCTACGCA
GGAACAGCCACTGGAACAACCATCTACAAGGAGCAAGGGCTTCAGCATAT
CGGCCATTTTGGGGGGAGGAAGTGCAAGCTTTCTAGACCAT

BO01540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1410 CG5187-PA 1..1407 17..1423 7020 99.9 Plus
Doc1-RA 1176 CG5133-PA 8..744 24..751 1400 79.6 Plus
Doc1-RB 1071 CG5133-PB 62..639 174..751 1330 82 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 355..1762 16..1423 7025 99.9 Plus
Doc1-RA 1526 CG5133-RA 173..909 24..751 1400 79.6 Plus
Doc1-RB 1339 CG5133-RB 145..722 174..751 1330 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9012869..9013624 1423..668 3765 99.9 Minus
3L 28110227 3L 9014708..9014977 532..263 1350 100 Minus
3L 28110227 3L 9017929..9018088 264..105 800 100 Minus
3L 28110227 3L 9043385..9043655 262..532 710 84.1 Plus
3L 28110227 3L 9014492..9014629 670..533 690 100 Minus
3L 28110227 3L 9005813..9006034 303..524 495 81.5 Plus
3L 28110227 3L 9018801..9018892 107..16 460 100 Minus
3L 28110227 3L 9006155..9006296 529..670 410 85.9 Plus
3L 28110227 3L 9044342..9044425 668..751 270 88.1 Plus
3L 28110227 3L 9006361..9006452 668..759 265 85.9 Plus
3L 28110227 3L 9041547..9041639 24..116 240 83.9 Plus
3L 28110227 3L 9043731..9043861 540..670 220 77.9 Plus
2L 23513712 2L 5466038..5466111 656..729 190 83.8 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:44 has no hits.

BO01540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:46 Download gff for BO01540.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 1..1410 17..1424 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:12 Download gff for BO01540.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 344..1756 9..1423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:44 Download gff for BO01540.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 356..1762 17..1425 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:46 Download gff for BO01540.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 344..1756 9..1423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:27 Download gff for BO01540.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 356..1762 17..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:27 Download gff for BO01540.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9014708..9014975 265..532 100 <- Minus
3L 9017929..9018085 108..264 100 <- Minus
3L 9018801..9018891 17..107 100   Minus
3L 9012867..9013621 671..1425 99 <- Minus
3L 9014492..9014629 533..670 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:44 Download gff for BO01540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9005967..9006721 671..1425 99 <- Minus
arm_3L 9007592..9007729 533..670 100 <- Minus
arm_3L 9007808..9008075 265..532 100 <- Minus
arm_3L 9011029..9011185 108..264 100 <- Minus
arm_3L 9011901..9011991 17..107 100   Minus

BO01540.pep Sequence

Translation from 16 to 1441

> BO01540.pep
MITMNELVDLRMQQHIAHEIYRQQIMQRIPDPFPPMLPIPMPRHVIMPPR
VTLPGVEMTLQNDDLWKQFHQIGTEMIITKSGRRMFPSMRLSVSGLEDES
NYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHW
QAQPILFNKVKLTNNTLDNSGHIVLASMHKYQPRLHVIRTADLAQIPWAP
QQAFVFAETEFVAVTAYQNDRITKLKIDNNPFAKGFRETGQSRCKRKMSS
SPTGEDQDQSPSLSHSQSQSESDMSPTKGGGETAGGTSSIGDSDGPQIKR
LRSNGSACSLSSSLDDQSVPGASSLALGSPPPHLHSHSHPHPLQARSASS
VFMQHFQQNMQSLLRPSLVDLACTYFGRPHEYGGAIQASPMYPPAAMLQA
GLGPHPGLNLPPGVSGADLISDESGAEELELDVGSETSTLEQSTQEQPLE
QPSTRSKGFSISAILGGGSASFLDH

BO01540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-PA 469 CG5187-PA 1..469 1..469 2466 100 Plus
Doc1-PA 391 CG5133-PA 1..389 1..465 1177 54.7 Plus
Doc3-PA 424 CG5093-PA 1..255 1..252 1065 77.2 Plus
Doc1-PB 356 CG5133-PB 1..354 36..465 1026 52.9 Plus
bi-PG 971 CG3578-PG 296..535 9..259 626 46.7 Plus