Clone BO01541 Report

Search the DGRC for BO01541

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:41
Vector:pDNR-Dual
Associated Gene/Transcriptap-RA
Protein status:BO01541.pep:
Sequenced Size:1441

Clone Sequence Records

BO01541.3prime Sequence

873 bp (808 high quality bases) assembled on 2005-11-30

> BO01541.3prime
ATGGTCTAGAAAGCTTGCGTCCAAGTTAAGTGGCGGTGTGCTGTTCGGTC
CTCCCAATATAAACGACGTAGGACTGTGCACGGAGATGCTGTCGAGGTCC
AGAGCGCCTTCGCCCTTCTCCAGCAGGCCGCTGCCATCCTGCTTCATCAT
CATGCGGCGCCATTTGGCCCTTGCATTTTGAAACCAGACCTGTAGGACCC
TCTTTGGTAAACCAGTTTTCTGTGACAATTGTTTTAGATCCTTTGCATCA
GGGTTATGATTAATGGCAAAGTAGGACTTCATGGTACGCAGCTGGTGATG
CTTAAACGAGGTTCGCATTCGTTTGGTGCGCGACGAGGAGCTTAGGTGCG
AGCCTCGGCCAAAGTCCACGTACTCAGTGTTGAGATCTATGTTAGCGGTG
AACGCCTCGATGTCCTTGGGCTTGCGCTTGCGGGGCCTGCCCTTTTGACG
AGCTGGCTGCGGCAGTCCGTTGATTACGTGGGACGCGGGCACAAAGATGC
CCGTAGGAACAATGCTCCGACTAGGGTCCGAGTGCGGGCTCGAGGAGTCG
TTGTGGGGTGAGCCGAACTGGGCGCTGTACGGGTAGGTGGCGCTCATACT
GGATGAGGCGGTATCCCCCTCCCTGGCTATGCTGTAGTGGGTCCTGCAGT
AGATGAGGGCGTCGATGATGCCGTACTGGTCTCCCTTTGTCAGTGGCGTG
TGGCAGACAGTGCAGCAGAAGCAGTTGACGTGAAAAACAAGATTTCTGGC
GCGCATGACCAGCTCGTTGGAGCTGATGGAGGCCAGGCAGCGCGAGCATC
GGCGAGTACCAAAAAACTATAATAATCGTTTTTGCAATAATGTTGCCGTC
ACGTGAGTAGCATGAGGATTCCC

BO01541.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8376-PA 1410 ap-RA 610..1407 816..19 3990 100 Minus
CG8376-PB 741 ap-RB 1..738 756..19 3690 100 Minus
CG8376-PA 1410 ap-RA 551..585 873..839 175 100 Minus
CG8376-PA 1410 ap-RA 585..614 840..811 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RE 2149 CG8376-RE 581..1437 873..19 4235 99.8 Minus
ap-RC 3089 CG8376-RC 1521..2377 873..19 4235 99.8 Minus
ap-RA 4114 CG8376-RA 1524..2380 873..19 4235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5708611..5708869 387..645 1295 100 Plus
2R 25286936 2R 5708181..5708381 188..388 1005 100 Plus
2R 25286936 2R 5708925..5709098 643..816 870 100 Plus
2R 25286936 2R 5707936..5708108 19..191 865 100 Plus
2R 25286936 2R 5716649..5716706 817..873 240 98.3 Plus
Blast to na_te.dros performed on 2015-02-11 15:42:58 has no hits.

BO01541.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:32:49 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:02 Download gff for BO01541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8376-PA 551..1410 15..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:19 Download gff for BO01541.3prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 1524..2383 15..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:12 Download gff for BO01541.3prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 1524..2383 15..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:12 Download gff for BO01541.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5708611..5708867 387..643 100 <- Plus
2R 5708926..5709099 644..816 99 <- Plus
2R 5716649..5716706 817..873 98   Plus
2R 5708183..5708379 190..386 100 <- Plus
2R 5707933..5708106 15..189 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:19 Download gff for BO01541.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1595438..1595611 15..189 98 <- Plus
arm_2R 1595688..1595884 190..386 100 <- Plus
arm_2R 1596116..1596372 387..643 100 <- Plus
arm_2R 1596431..1596604 644..816 99 <- Plus
arm_2R 1604154..1604211 817..873 98   Plus

BO01541.5prime Sequence

783 bp (667 high quality bases) assembled on 2005-11-30

> BO01541.5prime
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGT
CCAACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGC
AGGTGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGT
GTCCAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGC
ACCGAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGA
CTCAGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGG
TCAGCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGA
CCGCCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCT
CGACGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCT
CCGCTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGT
CGGCAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACAT
TTATTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGC
GCTGCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAAT
CTTGTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACT
GACAAAGGGGAGGACAGTACGGGCATCATCGAC

BO01541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8376-PA 1410 ap-RA 1..743 17..759 3715 100 Plus
CG8376-PB 741 ap-RB 1..74 686..759 370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RA 4114 CG8376-RA 972..1738 15..783 3765 99.5 Plus
ap-RC 3089 CG8376-RC 972..1735 15..783 3710 99.1 Plus
ap-RE 2149 CG8376-RE 73..795 59..783 3545 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5717281..5717500 485..266 1100 100 Minus
2R 25286936 2R 5717555..5717767 267..55 1065 100 Minus
2R 25286936 2R 5716649..5716790 624..483 710 100 Minus
2R 25286936 2R 5708965..5709105 759..619 690 99.3 Minus
2R 25286936 2R 5725821..5725861 55..15 205 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:29:10 has no hits.

BO01541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:32:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:03 Download gff for BO01541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8376-PA 1..765 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:11 Download gff for BO01541.5prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 966..1738 10..783 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:10 Download gff for BO01541.5prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 966..1738 10..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:10 Download gff for BO01541.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5708943..5709099 625..783 97 <- Minus
2R 5716649..5716788 485..624 100 <- Minus
2R 5717282..5717498 268..484 100 <- Minus
2R 5717555..5717766 56..267 100 <- Minus
2R 5725821..5725867 10..55 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:11 Download gff for BO01541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1596448..1596604 625..783 97 <- Minus
arm_2R 1604154..1604293 485..624 100 <- Minus
arm_2R 1604787..1605003 268..484 100 <- Minus
arm_2R 1605060..1605271 56..267 100 <- Minus
arm_2R 1613326..1613372 10..55 95   Minus

BO01541.complete Sequence

1441 bp (1441 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629535

> BO01541.complete
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGT
CCAACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGC
AGGTGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGT
GTCCAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGC
ACCGAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGA
CTCAGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGG
TCAGCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGA
CCGCCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCT
CGACGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCT
CCGCTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGT
CGGCAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACAT
TTATTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGC
GCTGCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAAT
CTTGTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACT
GACAAAGGGAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGA
CCCACTACAGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGC
GCCACCTACCCGTACAGCGCCCAGTTCGGCTCACCCCACAACGACTCCTC
GAGCCCGCACTCGGACCCTAGTCGGAGCATTGTTCCTACGGGCATCTTTG
TGCCCGCGTCCCACGTAATCAACGGACTGCCGCAGCCAGCTCGTCAAAAG
GGCAGGCCCCGCAAGCGCAAGCCCAAGGACATCGAGGCGTTCACCGCTAA
CATAGATCTCAACACTGAGTACGTGGACTTTGGCCGAGGCTCGCACCTAA
GCTCCTCGTCGCGCACCAAACGAATGCGAACCTCGTTTAAGCATCACCAG
CTGCGTACCATGAAGTCCTACTTTGCCATTAATCATAACCCTGATGCAAA
GGATCTAAAACAATTGTCACAGAAAACTGGTTTACCAAAGAGGGTCCTAC
AGGTCTGGTTTCAAAATGCAAGGGCCAAATGGCGCCGCATGATGATGAAG
CAGGATGGCAGCGGCCTGCTGGAGAAGGGCGAAGGCGCTCTGGACCTCGA
CAGCATCTCCGTGCACAGTCCTACGTCGTTTATATTGGGAGGACCGAACA
GCACACCGCCACTTAACTTGGACGCAAGCTTTCTAGACCAT

BO01541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RA 1410 CG8376-PA 1..1407 17..1423 7035 100 Plus
ap-RC 1407 CG8376-PC 1..1404 17..1423 6955 99.8 Plus
ap-RE 741 CG8376-PE 1..738 686..1423 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RA 4114 CG8376-RA 972..2380 15..1423 7045 100 Plus
ap-RC 3089 CG8376-RC 972..2377 15..1423 6965 99.8 Plus
ap-RE 2149 CG8376-RE 73..1437 59..1423 6825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5708611..5708869 1055..797 1295 100 Minus
2R 25286936 2R 5717281..5717500 485..266 1100 100 Minus
2R 25286936 2R 5717555..5717767 267..55 1065 100 Minus
2R 25286936 2R 5708181..5708381 1254..1054 1005 100 Minus
2R 25286936 2R 5708925..5709105 799..619 890 99.4 Minus
2R 25286936 2R 5707936..5708108 1423..1251 865 100 Minus
2R 25286936 2R 5716649..5716790 624..483 710 100 Minus
2R 25286936 2R 5725821..5725861 55..15 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:37:07 has no hits.

BO01541.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:29 Download gff for BO01541.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 1..1410 17..1427 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:34 Download gff for BO01541.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 972..2378 17..1425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:09 Download gff for BO01541.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 974..2380 17..1425 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:29 Download gff for BO01541.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 964..2381 10..1427 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:41 Download gff for BO01541.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 974..2380 17..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:41 Download gff for BO01541.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5707934..5708106 1253..1425 98 <- Minus
2R 5708183..5708379 1056..1252 100 <- Minus
2R 5708611..5708867 799..1055 100 <- Minus
2R 5708926..5709099 625..798 100 <- Minus
2R 5716649..5716788 485..624 100 <- Minus
2R 5717282..5717498 268..484 100 <- Minus
2R 5717555..5717766 56..267 100 <- Minus
2R 5725821..5725859 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:09 Download gff for BO01541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1604154..1604293 485..624 100 <- Minus
arm_2R 1596116..1596372 799..1055 100 <- Minus
arm_2R 1595439..1595611 1253..1425 98 <- Minus
arm_2R 1595688..1595884 1056..1252 100 <- Minus
arm_2R 1596431..1596604 625..798 100 <- Minus
arm_2R 1604787..1605003 268..484 100 <- Minus
arm_2R 1605060..1605271 56..267 100 <- Minus
arm_2R 1613326..1613364 17..55 100   Minus

BO01541.pep Sequence

Translation from 16 to 1441

> BO01541.pep
MGVCTEERPVMHWQQSARFLGPGAREKSPTPPVAHQGSNQCGSAAGANNN
HPLFRACSSSSCPDICDHSTKPFGNAYGTESFRSYETADRATFEDSAAKF
SISRSRTDCTEVSDETTSGISFKTEPFGPPSSPESTSDSKITRNLDDCSG
CGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKND
YYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQ
YGIIDALIYCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSD
PSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNT
EYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
SQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDLDSISVH
SPTSFILGGPNSTPPLNLDASFLDH

BO01541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
ap-PA 469 CG8376-PA 1..469 1..469 2530 100 Plus
ap-PC 468 CG8376-PC 1..468 1..469 2513 99.8 Plus
ap-PE 246 CG8376-PE 1..246 224..469 1311 100 Plus
ap-PB 246 CG8376-PB 1..246 224..469 1311 100 Plus
tup-PB 465 CG10619-PB 49..331 143..452 391 31.5 Plus