Clone Sequence Records
BO01541.3prime Sequence
873 bp (808 high quality bases) assembled on 2005-11-30
> BO01541.3prime
ATGGTCTAGAAAGCTTGCGTCCAAGTTAAGTGGCGGTGTGCTGTTCGGTC
CTCCCAATATAAACGACGTAGGACTGTGCACGGAGATGCTGTCGAGGTCC
AGAGCGCCTTCGCCCTTCTCCAGCAGGCCGCTGCCATCCTGCTTCATCAT
CATGCGGCGCCATTTGGCCCTTGCATTTTGAAACCAGACCTGTAGGACCC
TCTTTGGTAAACCAGTTTTCTGTGACAATTGTTTTAGATCCTTTGCATCA
GGGTTATGATTAATGGCAAAGTAGGACTTCATGGTACGCAGCTGGTGATG
CTTAAACGAGGTTCGCATTCGTTTGGTGCGCGACGAGGAGCTTAGGTGCG
AGCCTCGGCCAAAGTCCACGTACTCAGTGTTGAGATCTATGTTAGCGGTG
AACGCCTCGATGTCCTTGGGCTTGCGCTTGCGGGGCCTGCCCTTTTGACG
AGCTGGCTGCGGCAGTCCGTTGATTACGTGGGACGCGGGCACAAAGATGC
CCGTAGGAACAATGCTCCGACTAGGGTCCGAGTGCGGGCTCGAGGAGTCG
TTGTGGGGTGAGCCGAACTGGGCGCTGTACGGGTAGGTGGCGCTCATACT
GGATGAGGCGGTATCCCCCTCCCTGGCTATGCTGTAGTGGGTCCTGCAGT
AGATGAGGGCGTCGATGATGCCGTACTGGTCTCCCTTTGTCAGTGGCGTG
TGGCAGACAGTGCAGCAGAAGCAGTTGACGTGAAAAACAAGATTTCTGGC
GCGCATGACCAGCTCGTTGGAGCTGATGGAGGCCAGGCAGCGCGAGCATC
GGCGAGTACCAAAAAACTATAATAATCGTTTTTGCAATAATGTTGCCGTC
ACGTGAGTAGCATGAGGATTCCC
BO01541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8376-PA | 1410 | ap-RA | 610..1407 | 816..19 | 3990 | 100 | Minus |
CG8376-PB | 741 | ap-RB | 1..738 | 756..19 | 3690 | 100 | Minus |
CG8376-PA | 1410 | ap-RA | 551..585 | 873..839 | 175 | 100 | Minus |
CG8376-PA | 1410 | ap-RA | 585..614 | 840..811 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ap-RE | 2149 | CG8376-RE | 581..1437 | 873..19 | 4235 | 99.8 | Minus |
ap-RC | 3089 | CG8376-RC | 1521..2377 | 873..19 | 4235 | 99.8 | Minus |
ap-RA | 4114 | CG8376-RA | 1524..2380 | 873..19 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5708611..5708869 | 387..645 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 5708181..5708381 | 188..388 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 5708925..5709098 | 643..816 | 870 | 100 | Plus |
2R | 25286936 | 2R | 5707936..5708108 | 19..191 | 865 | 100 | Plus |
2R | 25286936 | 2R | 5716649..5716706 | 817..873 | 240 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:42:58 has no hits.
BO01541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:32:49 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:02 Download gff for
BO01541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8376-PA | 551..1410 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:19 Download gff for
BO01541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 1524..2383 | 15..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:12 Download gff for
BO01541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 1524..2383 | 15..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:12 Download gff for
BO01541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5708611..5708867 | 387..643 | 100 | <- | Plus |
2R | 5708926..5709099 | 644..816 | 99 | <- | Plus |
2R | 5716649..5716706 | 817..873 | 98 | | Plus |
2R | 5708183..5708379 | 190..386 | 100 | <- | Plus |
2R | 5707933..5708106 | 15..189 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:19 Download gff for
BO01541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1595438..1595611 | 15..189 | 98 | <- | Plus |
arm_2R | 1595688..1595884 | 190..386 | 100 | <- | Plus |
arm_2R | 1596116..1596372 | 387..643 | 100 | <- | Plus |
arm_2R | 1596431..1596604 | 644..816 | 99 | <- | Plus |
arm_2R | 1604154..1604211 | 817..873 | 98 | | Plus |
BO01541.5prime Sequence
783 bp (667 high quality bases) assembled on 2005-11-30
> BO01541.5prime
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGT
CCAACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGC
AGGTGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGT
GTCCAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGC
ACCGAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGA
CTCAGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGG
TCAGCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGA
CCGCCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCT
CGACGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCT
CCGCTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGT
CGGCAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACAT
TTATTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGC
GCTGCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAAT
CTTGTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACT
GACAAAGGGGAGGACAGTACGGGCATCATCGAC
BO01541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8376-PA | 1410 | ap-RA | 1..743 | 17..759 | 3715 | 100 | Plus |
CG8376-PB | 741 | ap-RB | 1..74 | 686..759 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ap-RA | 4114 | CG8376-RA | 972..1738 | 15..783 | 3765 | 99.5 | Plus |
ap-RC | 3089 | CG8376-RC | 972..1735 | 15..783 | 3710 | 99.1 | Plus |
ap-RE | 2149 | CG8376-RE | 73..795 | 59..783 | 3545 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5717281..5717500 | 485..266 | 1100 | 100 | Minus |
2R | 25286936 | 2R | 5717555..5717767 | 267..55 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 5716649..5716790 | 624..483 | 710 | 100 | Minus |
2R | 25286936 | 2R | 5708965..5709105 | 759..619 | 690 | 99.3 | Minus |
2R | 25286936 | 2R | 5725821..5725861 | 55..15 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:29:10 has no hits.
BO01541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:32:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:03 Download gff for
BO01541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8376-PA | 1..765 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:11 Download gff for
BO01541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 966..1738 | 10..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:10 Download gff for
BO01541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 966..1738 | 10..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:10 Download gff for
BO01541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5708943..5709099 | 625..783 | 97 | <- | Minus |
2R | 5716649..5716788 | 485..624 | 100 | <- | Minus |
2R | 5717282..5717498 | 268..484 | 100 | <- | Minus |
2R | 5717555..5717766 | 56..267 | 100 | <- | Minus |
2R | 5725821..5725867 | 10..55 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:11 Download gff for
BO01541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1596448..1596604 | 625..783 | 97 | <- | Minus |
arm_2R | 1604154..1604293 | 485..624 | 100 | <- | Minus |
arm_2R | 1604787..1605003 | 268..484 | 100 | <- | Minus |
arm_2R | 1605060..1605271 | 56..267 | 100 | <- | Minus |
arm_2R | 1613326..1613372 | 10..55 | 95 | | Minus |
BO01541.complete Sequence
1441 bp (1441 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629535
> BO01541.complete
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGT
CCAACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGC
AGGTGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGT
GTCCAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGC
ACCGAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGA
CTCAGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGG
TCAGCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGA
CCGCCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCT
CGACGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCT
CCGCTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGT
CGGCAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACAT
TTATTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGC
GCTGCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAAT
CTTGTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACT
GACAAAGGGAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGA
CCCACTACAGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGC
GCCACCTACCCGTACAGCGCCCAGTTCGGCTCACCCCACAACGACTCCTC
GAGCCCGCACTCGGACCCTAGTCGGAGCATTGTTCCTACGGGCATCTTTG
TGCCCGCGTCCCACGTAATCAACGGACTGCCGCAGCCAGCTCGTCAAAAG
GGCAGGCCCCGCAAGCGCAAGCCCAAGGACATCGAGGCGTTCACCGCTAA
CATAGATCTCAACACTGAGTACGTGGACTTTGGCCGAGGCTCGCACCTAA
GCTCCTCGTCGCGCACCAAACGAATGCGAACCTCGTTTAAGCATCACCAG
CTGCGTACCATGAAGTCCTACTTTGCCATTAATCATAACCCTGATGCAAA
GGATCTAAAACAATTGTCACAGAAAACTGGTTTACCAAAGAGGGTCCTAC
AGGTCTGGTTTCAAAATGCAAGGGCCAAATGGCGCCGCATGATGATGAAG
CAGGATGGCAGCGGCCTGCTGGAGAAGGGCGAAGGCGCTCTGGACCTCGA
CAGCATCTCCGTGCACAGTCCTACGTCGTTTATATTGGGAGGACCGAACA
GCACACCGCCACTTAACTTGGACGCAAGCTTTCTAGACCAT
BO01541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ap-RA | 1410 | CG8376-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
ap-RC | 1407 | CG8376-PC | 1..1404 | 17..1423 | 6955 | 99.8 | Plus |
ap-RE | 741 | CG8376-PE | 1..738 | 686..1423 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ap-RA | 4114 | CG8376-RA | 972..2380 | 15..1423 | 7045 | 100 | Plus |
ap-RC | 3089 | CG8376-RC | 972..2377 | 15..1423 | 6965 | 99.8 | Plus |
ap-RE | 2149 | CG8376-RE | 73..1437 | 59..1423 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5708611..5708869 | 1055..797 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 5717281..5717500 | 485..266 | 1100 | 100 | Minus |
2R | 25286936 | 2R | 5717555..5717767 | 267..55 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 5708181..5708381 | 1254..1054 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 5708925..5709105 | 799..619 | 890 | 99.4 | Minus |
2R | 25286936 | 2R | 5707936..5708108 | 1423..1251 | 865 | 100 | Minus |
2R | 25286936 | 2R | 5716649..5716790 | 624..483 | 710 | 100 | Minus |
2R | 25286936 | 2R | 5725821..5725861 | 55..15 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:37:07 has no hits.
BO01541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:29 Download gff for
BO01541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 1..1410 | 17..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:34 Download gff for
BO01541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 972..2378 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:09 Download gff for
BO01541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 974..2380 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:29 Download gff for
BO01541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 964..2381 | 10..1427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:41 Download gff for
BO01541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ap-RA | 974..2380 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:41 Download gff for
BO01541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5707934..5708106 | 1253..1425 | 98 | <- | Minus |
2R | 5708183..5708379 | 1056..1252 | 100 | <- | Minus |
2R | 5708611..5708867 | 799..1055 | 100 | <- | Minus |
2R | 5708926..5709099 | 625..798 | 100 | <- | Minus |
2R | 5716649..5716788 | 485..624 | 100 | <- | Minus |
2R | 5717282..5717498 | 268..484 | 100 | <- | Minus |
2R | 5717555..5717766 | 56..267 | 100 | <- | Minus |
2R | 5725821..5725859 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:09 Download gff for
BO01541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1604154..1604293 | 485..624 | 100 | <- | Minus |
arm_2R | 1596116..1596372 | 799..1055 | 100 | <- | Minus |
arm_2R | 1595439..1595611 | 1253..1425 | 98 | <- | Minus |
arm_2R | 1595688..1595884 | 1056..1252 | 100 | <- | Minus |
arm_2R | 1596431..1596604 | 625..798 | 100 | <- | Minus |
arm_2R | 1604787..1605003 | 268..484 | 100 | <- | Minus |
arm_2R | 1605060..1605271 | 56..267 | 100 | <- | Minus |
arm_2R | 1613326..1613364 | 17..55 | 100 | | Minus |
BO01541.pep Sequence
Translation from 16 to 1441
> BO01541.pep
MGVCTEERPVMHWQQSARFLGPGAREKSPTPPVAHQGSNQCGSAAGANNN
HPLFRACSSSSCPDICDHSTKPFGNAYGTESFRSYETADRATFEDSAAKF
SISRSRTDCTEVSDETTSGISFKTEPFGPPSSPESTSDSKITRNLDDCSG
CGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKND
YYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQ
YGIIDALIYCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSD
PSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNT
EYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
SQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDLDSISVH
SPTSFILGGPNSTPPLNLDASFLDH
BO01541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ap-PA | 469 | CG8376-PA | 1..469 | 1..469 | 2530 | 100 | Plus |
ap-PC | 468 | CG8376-PC | 1..468 | 1..469 | 2513 | 99.8 | Plus |
ap-PE | 246 | CG8376-PE | 1..246 | 224..469 | 1311 | 100 | Plus |
ap-PB | 246 | CG8376-PB | 1..246 | 224..469 | 1311 | 100 | Plus |
tup-PB | 465 | CG10619-PB | 49..331 | 143..452 | 391 | 31.5 | Plus |