Clone BO01547 Report

Search the DGRC for BO01547

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptMlp84B-RA
Protein status:BO01547.pep:
Sequenced Size:1519

Clone Sequence Records

BO01547.3prime Sequence

906 bp (826 high quality bases) assembled on 2005-11-30

> BO01547.3prime
ATGGTCTAGAAAGCTTGCGAACGTTGTCAAAGCGCCCGCGCCCAGACCGT
AGCCCACTCCCTTGGGTCCAAAATTGCGGCCGTAGCAGGCTCGGCAGTAG
ATATCGCCGTCGGGTCCATCGTTCAGGTTGGTCGAGTCCAGCGATTTGCG
GCAATCCGAGCAGTAGAAGCACCTCTTGTGCCAGATCCTGGTCTTGCTGA
TCATCTGCTCGGCGGCGAACACGGCGAAACCGCAACGCGGGCAGCCGCCC
GAAGTCTTGGGTCCGGCCAGAGGACGGCCATCTGGGAACTGGATGGTGCT
CTCGCCACTGGTTGACACTAGAGTGGGGGCGTGGCCGTAACCAAAGCCCT
TGGGGCCGAAGAGCTTGCCGTAGCAGGCGCGGCAGTGGATGTCGCCATCG
GGTCCATCGCAGGCCAGGACCGAGTCCAATGGCCGGTGGCAGTCGGCGCA
GTTGTAGCACTTCTTGTGCCACACCTTGCCCTTGGACAGCTGTTGCTCGG
CGGCGAATACGGCTCCTCCGCACCGGGGACAGCCTTCGCCGTCACGGGCC
TTAATTGACGTGGTGTCCGGGTTATAGAAGGGCCTGTTGGCGCTGATCTG
ATCCTCGGTCAAGCCATCGGTCTGCAGGAAACCAGAGCCGCATGCGAATC
CATAGCCATGTGGTCCCCACTTCTTGCCGTAGCAGGTGCGGCAGTACACA
TCACGATCGGGACCATCACTGGCATTGATCGAGTCCAGAGTCTTGTGGCA
ATCCTTGCAGTTGAAGCACTTCTTGTGCCACTCCCGACCCTTGGAAAGCT
TCTGCTCCGCTGCGTAGACCACACCGCCGCAACGTGGGCAACCCTCACCC
GGACGGGCCTGGATCTTGTCCACATCAATGGCGGCACGGGATTGCGGTGC
TCCGTC

BO01547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1019-PA 1488 Mlp84B-RA 598..1485 906..19 4390 99.7 Minus
CG1019-PB 1488 Mlp84B-RB 598..1485 906..19 4390 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp84B-RC 3071 CG1019-RC 759..1646 906..19 4410 99.8 Minus
Mlp84B-RB 2382 CG1019-RB 742..1629 906..19 4410 99.8 Minus
Mlp84B-RA 2399 CG1019-RA 759..1646 906..19 4410 99.8 Minus
Mlp84B-RC 3071 CG1019-RC 805..992 551..364 220 74.5 Minus
Mlp84B-RC 3071 CG1019-RC 1114..1301 860..673 220 74.5 Minus
Mlp84B-RB 2382 CG1019-RB 788..975 551..364 220 74.5 Minus
Mlp84B-RB 2382 CG1019-RB 1097..1284 860..673 220 74.5 Minus
Mlp84B-RC 3071 CG1019-RC 885..989 183..79 180 78.1 Minus
Mlp84B-RC 3071 CG1019-RC 1482..1586 780..676 180 78.1 Minus
Mlp84B-RB 2382 CG1019-RB 868..972 183..79 180 78.1 Minus
Mlp84B-RB 2382 CG1019-RB 1465..1569 780..676 180 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7114275..7115162 19..906 4410 99.8 Plus
2R 25286936 2R 24077095..24077356 570..309 410 77.1 Minus
2R 25286936 2R 24076718..24076945 840..613 330 76.3 Minus
2R 25286936 2R 24077477..24077677 247..47 255 75.1 Minus
3R 32079331 3R 7114620..7114807 673..860 220 74.5 Plus
3R 32079331 3R 7114929..7115116 364..551 220 74.5 Plus
Blast to na_te.dros performed on 2015-02-11 22:00:13 has no hits.

BO01547.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:58 Download gff for BO01547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1019-PA 598..1488 15..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:15 Download gff for BO01547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1019-PB 598..1488 15..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:23 Download gff for BO01547.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 759..1649 15..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:45:21 Download gff for BO01547.3prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 759..1649 15..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:45:21 Download gff for BO01547.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7114271..7115162 15..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:23 Download gff for BO01547.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2939993..2940884 15..906 99   Plus

BO01547.5prime Sequence

880 bp (712 high quality bases) assembled on 2005-11-30

> BO01547.5prime
GAAGTTATCAGTCGACATGCCTTCCTTCCAACCGATCGAGGCCCCCAAGT
GTCCGCGCTGCGGCAAGAGTGTCTACGCTGCCGAAGAGCGTCTGGCTGGC
GGCTATGTATTCCACAAGAACTGCTTCAAGTGCGGAATGTGCAACAAATC
CCTGGACTCCACCAACTGCACAGAGCACGAGCGCGAGCTCTACTGCAAGA
CGTGCCACGGTCGCAAGTTCGGGCCGAAAGGTTACGGCTTCGGCACTGGA
GCTGGCACCCTCTCCATGGACAACGGGTCACAGTTCCTGCGCGAGAACGG
CGATGTGCCGTCCGTAAGGAATGGAGCCCGCCTGGAACCCAGGGCTATTG
CTCGTGCCCCCGAAGGTGAGGGCTGTCCTCGTTGCGGTGGCTATGTGTAC
GCCGCCGAACAGATGTTAGCCCGCGGTCGCAGCTGGCACAAGGAGTGCTT
CAAGTGCGGTACCTGCAAGAAGGGTCTGGACTCGATCCTGTGCTGCGAGG
CTCCGGACAAGAACATCTACTGCAAGGGCTGCTATGCCAAGAAGTTTGGA
CCCAAGGGCTATGGTTATGGCCAGGGCGGTGGTGCTCTCCAGTCCGACTG
CTATGCTCACGACGACGGAGCACCGCAAATCCGTGCCGCCATTGATGTGG
ACAAGATCCAGGCCCGTCCGGGTGAGGGTTGCCCACGTTGCGGCGGTGTG
GTCTACGCAGCGGAGCAGAAGCTTTCCAAGGGTCGGGAGTGGCACAAGAA
GTGCTTCAACTGCAAGGGATGCCACAAGACTCTGGACTCGATCAATGCCA
GTGATGGTCCCGATCGTGATGTGTACTGCCGCACCTGCTACGGGCAGAAG
TGGGGACCACATGGCTATGGATTCGCATGC

BO01547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1019-PA 1488 Mlp84B-RA 1..864 17..880 4220 99.5 Plus
CG1019-PB 1488 Mlp84B-RB 1..864 17..880 4220 99.5 Plus
CG33149-PA 279 Mlp60A-RA 90..162 109..181 190 90.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp84B-RC 3071 CG1019-RC 162..1025 17..880 4260 99.5 Plus
Mlp84B-RB 2382 CG1019-RB 145..1008 17..880 4260 99.5 Plus
Mlp84B-RA 2399 CG1019-RA 162..1025 17..880 4260 99.5 Plus
Mlp84B-RC 3071 CG1019-RC 1114..1297 660..843 185 73.4 Plus
Mlp84B-RB 2382 CG1019-RB 1097..1280 660..843 185 73.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7114896..7115759 880..17 4260 99.5 Minus
2R 25286936 2R 24075451..24075586 137..272 245 78.7 Plus
2R 25286936 2R 24076718..24076914 680..876 235 74.6 Plus
2R 25286936 2R 24075245..24075336 42..133 190 80.4 Plus
3R 32079331 3R 7114624..7114807 843..660 185 73.4 Minus
Blast to na_te.dros performed on 2015-02-10 15:48:31 has no hits.

BO01547.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:32:59 Download gff for BO01547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1019-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:17 Download gff for BO01547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1019-PB 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:30 Download gff for BO01547.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 154..1025 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:43 Download gff for BO01547.5prime
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 154..1025 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:43 Download gff for BO01547.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7114896..7115767 9..880 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:30 Download gff for BO01547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2940618..2941489 9..880 99   Minus

BO01547.complete Sequence

1519 bp (1519 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629536

> BO01547.complete
GAAGTTATCAGTCGACATGCCTTCCTTCCAACCGATCGAGGCCCCCAAGT
GTCCGCGCTGCGGCAAGAGTGTCTACGCTGCCGAAGAGCGTCTGGCTGGC
GGCTATGTATTCCACAAGAACTGCTTCAAGTGCGGAATGTGCAACAAATC
CCTGGACTCCACCAACTGCACAGAGCACGAGCGCGAGCTCTACTGCAAGA
CGTGCCACGGTCGCAAGTTCGGGCCGAAAGGTTACGGCTTCGGCACTGGA
GCTGGCACCCTCTCCATGGACAACGGGTCACAGTTCCTGCGCGAGAACGG
CGATGTGCCGTCCGTAAGGAATGGAGCCCGCCTGGAACCCAGGGCTATTG
CTCGTGCCCCCGAAGGTGAGGGCTGTCCTCGTTGCGGTGGCTATGTGTAC
GCCGCCGAACAGATGTTAGCCCGCGGTCGCAGCTGGCACAAGGAGTGCTT
CAAGTGCGGTACCTGCAAGAAGGGTCTGGACTCGATCCTGTGCTGCGAGG
CTCCGGACAAGAACATCTACTGCAAGGGCTGCTATGCCAAGAAGTTTGGA
CCCAAGGGCTATGGTTATGGCCAGGGCGGTGGTGCTCTCCAGTCCGACTG
CTATGCTCACGACGACGGAGCACCGCAAATCCGTGCCGCCATTGATGTGG
ACAAGATCCAGGCCCGTCCGGGTGAGGGTTGCCCACGTTGCGGCGGTGTG
GTCTACGCAGCGGAGCAGAAGCTTTCCAAGGGTCGGGAGTGGCACAAGAA
GTGCTTCAACTGCAAGGATTGCCACAAGACTCTGGACTCGATCAATGCCA
GTGATGGTCCCGATCGTGATGTGTACTGCCGCACCTGCTACGGCAAGAAG
TGGGGACCACATGGCTATGGATTCGCATGCGGCTCTGGTTTCCTGCAGAC
CGATGGCTTGACCGAGGATCAGATCAGCGCCAACAGGCCCTTCTATAACC
CGGACACCACGTCAATTAAGGCCCGTGACGGCGAAGGCTGTCCCCGGTGC
GGAGGAGCCGTATTCGCCGCCGAGCAACAGCTGTCCAAGGGCAAGGTGTG
GCACAAGAAGTGCTACAACTGCGCCGACTGCCACCGGCCATTGGACTCGG
TCCTGGCCTGCGATGGACCCGATGGCGACATCCACTGCCGCGCCTGCTAC
GGCAAGCTCTTCGGCCCCAAGGGCTTTGGTTACGGCCACGCCCCCACTCT
AGTGTCAACCAGTGGCGAGAGCACCATCCAGTTCCCAGATGGCCGTCCTC
TGGCCGGACCCAAGACTTCGGGCGGCTGCCCGCGTTGCGGTTTCGCCGTG
TTCGCCGCCGAGCAGATGATCAGCAAGACCAGGATCTGGCACAAGAGGTG
CTTCTACTGCTCGGATTGCCGCAAATCGCTGGACTCGACCAACCTGAACG
ATGGACCCGACGGCGATATCTACTGCCGAGCCTGCTACGGCCGCAATTTT
GGACCCAAGGGAGTGGGCTACGGTCTGGGCGCGGGCGCTTTGACAACGTT
CGCAAGCTTTCTAGACCAT

BO01547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp84B-RC 1488 CG1019-PC 1..1485 17..1501 7425 100 Plus
Mlp84B-RB 1488 CG1019-PB 1..1485 17..1501 7425 100 Plus
Mlp84B-RA 1488 CG1019-PA 1..1485 17..1501 7425 100 Plus
Mlp84B-RC 1488 CG1019-PC 644..831 969..1156 220 74.5 Plus
Mlp84B-RC 1488 CG1019-PC 953..1140 660..847 220 74.5 Plus
Mlp84B-RB 1488 CG1019-PB 644..831 969..1156 220 74.5 Plus
Mlp84B-RB 1488 CG1019-PB 953..1140 660..847 220 74.5 Plus
Mlp84B-RC 1488 CG1019-PC 724..828 1337..1441 180 78.1 Plus
Mlp84B-RC 1488 CG1019-PC 1321..1425 740..844 180 78.1 Plus
Mlp84B-RB 1488 CG1019-PB 724..828 1337..1441 180 78.1 Plus
Mlp84B-RB 1488 CG1019-PB 1321..1425 740..844 180 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp84B-RC 3071 CG1019-RC 162..1646 17..1501 7425 100 Plus
Mlp84B-RB 2382 CG1019-RB 145..1629 17..1501 7425 100 Plus
Mlp84B-RA 2399 CG1019-RA 162..1646 17..1501 7425 100 Plus
Mlp84B-RC 3071 CG1019-RC 1114..1301 660..847 220 74.5 Plus
Mlp84B-RC 3071 CG1019-RC 805..992 969..1156 220 74.5 Plus
Mlp84B-RB 2382 CG1019-RB 788..975 969..1156 220 74.5 Plus
Mlp84B-RB 2382 CG1019-RB 1097..1284 660..847 220 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7114275..7115759 1501..17 7425 100 Minus
2R 25286936 2R 24077095..24077356 950..1211 410 77.1 Plus
2R 25286936 2R 24076718..24076945 680..907 330 76.3 Plus
2R 25286936 2R 24077477..24077677 1273..1473 255 75.1 Plus
2R 25286936 2R 24075451..24075586 137..272 245 78.7 Plus
3R 32079331 3R 7114620..7114807 847..660 220 74.5 Minus
3R 32079331 3R 7114929..7115116 1156..969 220 74.5 Minus
2R 25286936 2R 24075245..24075336 42..133 190 80.4 Plus
Blast to na_te.dros performed on 2014-11-27 15:46:40 has no hits.

BO01547.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:17 Download gff for BO01547.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RB 1..1488 17..1505 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:55 Download gff for BO01547.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RB 135..1630 9..1505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:17 Download gff for BO01547.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 162..1646 17..1503 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:17 Download gff for BO01547.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RB 135..1630 9..1505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:18 Download gff for BO01547.complete
Subject Subject Range Query Range Percent Splice Strand
Mlp84B-RA 162..1646 17..1503 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:18 Download gff for BO01547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7114273..7115759 17..1503 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:17 Download gff for BO01547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2939995..2941481 17..1503 99   Minus

BO01547.pep Sequence

Translation from 16 to 1519

> BO01547.pep
MPSFQPIEAPKCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTN
CTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQFLRENGDVPSV
RNGARLEPRAIARAPEGEGCPRCGGYVYAAEQMLARGRSWHKECFKCGTC
KKGLDSILCCEAPDKNIYCKGCYAKKFGPKGYGYGQGGGALQSDCYAHDD
GAPQIRAAIDVDKIQARPGEGCPRCGGVVYAAEQKLSKGREWHKKCFNCK
DCHKTLDSINASDGPDRDVYCRTCYGKKWGPHGYGFACGSGFLQTDGLTE
DQISANRPFYNPDTTSIKARDGEGCPRCGGAVFAAEQQLSKGKVWHKKCY
NCADCHRPLDSVLACDGPDGDIHCRACYGKLFGPKGFGYGHAPTLVSTSG
ESTIQFPDGRPLAGPKTSGGCPRCGFAVFAAEQMISKTRIWHKRCFYCSD
CRKSLDSTNLNDGPDGDIYCRACYGRNFGPKGVGYGLGAGALTTFASFLD
H

BO01547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
Mlp84B-PC 495 CG1019-PC 1..495 1..495 2828 100 Plus
Mlp84B-PB 495 CG1019-PB 1..495 1..495 2828 100 Plus
Mlp84B-PA 495 CG1019-PA 1..495 1..495 2828 100 Plus
Mlp60A-PC 486 CG42309-PC 3..484 4..493 1859 67 Plus
Mlp60A-PB 486 CG42309-PB 3..484 4..493 1859 67 Plus
Mlp60A-PC 486 CG42309-PC 11..286 222..494 693 46.2 Plus
Mlp60A-PC 486 CG42309-PC 412..485 12..84 202 50 Plus