Clone Sequence Records
BO01551.3prime Sequence
843 bp (767 high quality bases) assembled on 2005-11-30
> BO01551.3prime
ATGGTCTAGAAAGCTTGCCACCCCGTACTTGATGCCGTACTCCTGGTAGT
GGCCCACATGCGGTCGGTAGTGGCTCAGATTGCTCAGCTGACCCAGCTGG
CCCAGGTTCCCGCTAAGCGCCGCATGGTGATGATGGTGGTGGTGGTGGCT
ACTGATCACCGCCGCCGCTGCTGCCGCTGATGCCGCTGCCACGGATGCGG
AGGCAGGTGGACTGGCGGATTGTAGGCTGCCGGTGGGACTACCGGTGTCC
AGTTGGCAGGATTGGTTCTGCTCGAAGATCATGTCGCGGAAACCCAGTGC
CGATGTGGGACTGCTGGTCAGCACGCTGGAGGATCCTCCACCGCCACCGC
CGCCGCCTCCGCCACCGTTGCCCACTCCATTGTGGTTGAGTACGCTGCTG
CTGTTGTTGTTATTATGTCCCGGGTGGGTGGGTGTGCCCTGCTGCCCATT
GTGAGGAACGGGTTCCGATGGTGGCGTTTCCGGGGTATACCAACCCCCGT
GCGCGGGACCATGCGGAGTTGAGATCGTGGTGGGCGAGTGTCCGGACGAT
TGGCCTCCCGCTCCTTGGCCGCCGGGGGTCAGAGGATGGGCCACGTGCGC
CACATGACGCTGCAGTTGCTGGGCATGATGGGCCGCCGCAGCGTGGTGGA
CATGATGCATCTGACTGCTGGCCACCGTGGCCAAGTTGTCCTCGTTCAAG
TGGTAGGGATAGGCGCTGTGATGGATCCGCGGGTTGTACACATTCATGAG
TGAGTCCACGGTGAAGCCGGGATGCTCCACTCCGCCGCCAGCCAAGTGGT
TCATTTGGGCCNAGCTGTCGTGGCAGGAGTTGAGCATTTGCGC
BO01551.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5069-PA | 1527 | croc-RA | 705..1524 | 838..19 | 4081 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
croc-RA | 2347 | CG5069-RA | 990..1809 | 838..19 | 4089 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21474671..21475490 | 19..838 | 4089 | 99.9 | Plus |
Blast to na_te.dros performed 2015-02-11 22:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2384 | 449..365 | 114 | 61.2 | Minus |
BO01551.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:04 Download gff for
BO01551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-PA | 700..1527 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:24 Download gff for
BO01551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5069-PA | 700..1527 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:25 Download gff for
BO01551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 985..1814 | 13..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:21 Download gff for
BO01551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 985..1814 | 13..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:21 Download gff for
BO01551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21474666..21475493 | 13..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:25 Download gff for
BO01551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21467766..21468593 | 13..843 | 99 | | Plus |
BO01551.5prime Sequence
757 bp (690 high quality bases) assembled on 2005-11-30
> BO01551.5prime
GAAGTTATCAGTCGACATGCATACGTTATTCAGCGACCAGAACTCCTTTA
CGCGCCACTATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTG
GCGGCGGCCAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGA
CCAGTACTCCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCC
CGCACCAGAACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTG
ATAGCCATGGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGG
GATCTATCAGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGC
AGGGCTGGCAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTC
GTGAAGGTGGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGAC
TCTGGATCCGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCC
GGCGTCGCCGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCC
ATCAAGCGGCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCT
CAAGCTGATGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATG
CTGCCCACTTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGC
AAGGAGGTCTCCCATGGCCGCATGCTCAACTCCTGCCACGACAGCTTGGC
CCAAATG
BO01551.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5069-PA | 1527 | croc-RA | 1..700 | 17..716 | 3500 | 100 | Plus |
CG5069-PA | 1527 | croc-RA | 706..741 | 722..757 | 180 | 100 | Plus |
CG16738-PA | 969 | slp1-RA | 477..534 | 343..400 | 165 | 91.3 | Plus |
CG1132-PA | 1098 | fd64A-RA | 391..428 | 344..381 | 165 | 97.3 | Plus |
CG3668-PA | 1371 | fd59A-RA | 384..446 | 355..417 | 140 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
croc-RA | 2347 | CG5069-RA | 285..1026 | 16..757 | 3665 | 99.7 | Plus |
fd59A-RA | 2228 | CG3668-RA | 593..876 | 221..504 | 325 | 74.7 | Plus |
fd64A-RB | 1414 | CG1132-RB | 486..669 | 223..406 | 290 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21475454..21476195 | 757..16 | 3650 | 99.5 | Minus |
2L | 23513712 | 2L | 3826211..3826373 | 294..456 | 245 | 76.7 | Plus |
3L | 28110227 | 3L | 4020416..4020478 | 344..406 | 240 | 92.1 | Plus |
3R | 32079331 | 3R | 25083588..25083851 | 224..487 | 225 | 72.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:16:19 has no hits.
BO01551.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:05 Download gff for
BO01551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-PA | 1..741 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:25 Download gff for
BO01551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5069-PA | 1..741 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:44 Download gff for
BO01551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 277..1026 | 7..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:37 Download gff for
BO01551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 277..1026 | 7..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:37 Download gff for
BO01551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21475454..21476203 | 7..757 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:44 Download gff for
BO01551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21468554..21469303 | 7..757 | 99 | | Minus |
BO01551.complete Sequence
1558 bp (1558 high quality bases) assembled on 2006-04-03
GenBank Submission: FJ629537
> BO01551.complete
GAAGTTATCAGTCGACATGCATACGTTATTCAGCGACCAGAACTCCTTTA
CGCGCCACTATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTG
GCGGCGGCCAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGA
CCAGTACTCCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCC
CGCACCAGAACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTG
ATAGCCATGGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGG
GATCTATCAGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGC
AGGGCTGGCAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTC
GTGAAGGTGGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGAC
TCTGGATCCGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCC
GGCGTCGCCGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCC
ATCAAGCGGCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCT
CAAGCTGATGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATG
CTGCCCACTTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGC
AAGGAGGTCTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGGC
CCAAATGAACCACTTGGCTGGCGGCGGAGTGGAGCATCCCGGCTTCACCG
TGGACTCACTCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTAT
CCCTACCACTTGAACGAGGACAACTTGGCCACGGTGGCCAGCAGTCAGAT
GCATCATGTCCACCACGCTGCGGCGGCCCATCATGCCCAGCAACTGCAGC
GTCATGTGGCGCACGTGGCCCATCCTCTGACCCCCGGCGGCCAAGGAGCG
GGAGGCCAATCGTCCGGACACTCGCCCACCACGATCTCAACTCCGCATGG
TCCCGCGCACGGGGGTTGGTATACCCCGGAAACGCCACCATCGGAACCCG
TTCCTCACAATGGGCAGCAGGGCACACCCACCCACCCGGGACATAATAAC
AACAACAGCAGCAGCGTACTCAACCACAATGGAGTGGGCAACGGTGGCGG
AGGCGGCGGCGGTGGCGGTGGAGGATCCTCCAGCGTGCTGACCAGCAGTC
CCACATCGGCACTGGGTTTCCGCGACATGATCTTCGAGCAGAACCAATCC
TGCCAACTGGACACCGGTAGTCCCACCGGCAGCCTACAATCCGCCAGTCC
ACCTGCCTCCGCATCCGTGGCAGCGGCATCAGCGGCAGCAGCGGCGGCGG
TGATCAGTAGCCACCACCACCACCATCATCACCATGCGGCGCTTAGCGGG
AACCTGGGCCAGCTGGGTCAGCTGAGCAATCTGAGCCACTACCGACCGCA
TGTGGGCCACTACCAGGAGTACGGCATCAAGTACGGGGTGGCAAGCTTTC
TAGACCAT
BO01551.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
croc-RA | 1527 | CG5069-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
fd59A-RA | 1371 | CG3668-PA | 250..533 | 221..504 | 310 | 73.9 | Plus |
fd64A-RB | 1098 | CG1132-PB | 270..453 | 223..406 | 290 | 77.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
croc-RA | 2347 | CG5069-RA | 285..1809 | 16..1540 | 7625 | 100 | Plus |
fd64A-RB | 1414 | CG1132-RB | 486..669 | 223..406 | 290 | 77.2 | Plus |
fd64A-RA | 1372 | CG1132-RA | 444..627 | 223..406 | 290 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21474671..21476195 | 1540..16 | 7625 | 100 | Minus |
2L | 23513712 | 2L | 3826211..3826373 | 294..456 | 245 | 76.7 | Plus |
3L | 28110227 | 3L | 4020416..4020478 | 344..406 | 240 | 92.1 | Plus |
3R | 32079331 | 3R | 25083588..25083851 | 224..487 | 225 | 72.3 | Plus |
3R | 32079331 | 3R | 25095286..25095380 | 356..450 | 190 | 80 | Plus |
3R | 32079331 | 3R | 28583744..28583849 | 406..301 | 185 | 78.3 | Minus |
Blast to na_te.dros performed 2014-11-27 13:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2384 | 1110..1194 | 114 | 61.2 | Plus |
BO01551.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:12 Download gff for
BO01551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 1..1527 | 17..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:18 Download gff for
BO01551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 354..1891 | 7..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:27 Download gff for
BO01551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 286..1809 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:12 Download gff for
BO01551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 354..1891 | 7..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:01 Download gff for
BO01551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
croc-RA | 286..1809 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:01 Download gff for
BO01551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21474669..21476194 | 17..1542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:27 Download gff for
BO01551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21467769..21469294 | 17..1542 | 99 | | Minus |
BO01551.pep Sequence
Translation from 16 to 1558
> BO01551.pep
MHTLFSDQNSFTRHYAQTAAGYGSASAVAAASSASAAAAAHYAYDQYSRY
PYSASAYGLGAPHQNKEIVKPPYSYIALIAMAIQNAADKKVTLNGIYQYI
MERFPYYRDNKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTLDPDS
YNMFDNGSFLRRRRRFKKKDVMREKEEAIKRQAMMNEKLAEMKPLKLMTN
GILEAKHMAAHAAHFKKEPLMDLGCLSGKEVSHAAMLNSCHDSLAQMNHL
AGGGVEHPGFTVDSLMNVYNPRIHHSAYPYHLNEDNLATVASSQMHHVHH
AAAAHHAQQLQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGG
WYTPETPPSEPVPHNGQQGTPTHPGHNNNNSSSVLNHNGVGNGGGGGGGG
GGGSSSVLTSSPTSALGFRDMIFEQNQSCQLDTGSPTGSLQSASPPASAS
VAAASAAAAAAVISSHHHHHHHHAALSGNLGQLGQLSNLSHYRPHVGHYQ
EYGIKYGVASFLDH
BO01551.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
croc-PA | 508 | CG5069-PA | 1..508 | 1..508 | 2729 | 100 | Plus |
fd59A-PA | 456 | CG3668-PA | 8..188 | 1..173 | 400 | 47.8 | Plus |
fkh-PD | 510 | CG10002-PD | 154..424 | 23..296 | 398 | 36.1 | Plus |
fkh-PB | 510 | CG10002-PB | 154..424 | 23..296 | 398 | 36.1 | Plus |
fkh-PA | 510 | CG10002-PA | 154..424 | 23..296 | 398 | 36.1 | Plus |