Clone BO01551 Report

Search the DGRC for BO01551

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:51
Vector:pDNR-Dual
Associated Gene/Transcriptcroc-RA
Protein status:BO01551.pep: validated full length
Sequenced Size:1558

Clone Sequence Records

BO01551.3prime Sequence

843 bp (767 high quality bases) assembled on 2005-11-30

> BO01551.3prime
ATGGTCTAGAAAGCTTGCCACCCCGTACTTGATGCCGTACTCCTGGTAGT
GGCCCACATGCGGTCGGTAGTGGCTCAGATTGCTCAGCTGACCCAGCTGG
CCCAGGTTCCCGCTAAGCGCCGCATGGTGATGATGGTGGTGGTGGTGGCT
ACTGATCACCGCCGCCGCTGCTGCCGCTGATGCCGCTGCCACGGATGCGG
AGGCAGGTGGACTGGCGGATTGTAGGCTGCCGGTGGGACTACCGGTGTCC
AGTTGGCAGGATTGGTTCTGCTCGAAGATCATGTCGCGGAAACCCAGTGC
CGATGTGGGACTGCTGGTCAGCACGCTGGAGGATCCTCCACCGCCACCGC
CGCCGCCTCCGCCACCGTTGCCCACTCCATTGTGGTTGAGTACGCTGCTG
CTGTTGTTGTTATTATGTCCCGGGTGGGTGGGTGTGCCCTGCTGCCCATT
GTGAGGAACGGGTTCCGATGGTGGCGTTTCCGGGGTATACCAACCCCCGT
GCGCGGGACCATGCGGAGTTGAGATCGTGGTGGGCGAGTGTCCGGACGAT
TGGCCTCCCGCTCCTTGGCCGCCGGGGGTCAGAGGATGGGCCACGTGCGC
CACATGACGCTGCAGTTGCTGGGCATGATGGGCCGCCGCAGCGTGGTGGA
CATGATGCATCTGACTGCTGGCCACCGTGGCCAAGTTGTCCTCGTTCAAG
TGGTAGGGATAGGCGCTGTGATGGATCCGCGGGTTGTACACATTCATGAG
TGAGTCCACGGTGAAGCCGGGATGCTCCACTCCGCCGCCAGCCAAGTGGT
TCATTTGGGCCNAGCTGTCGTGGCAGGAGTTGAGCATTTGCGC

BO01551.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5069-PA 1527 croc-RA 705..1524 838..19 4081 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 990..1809 838..19 4089 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21474671..21475490 19..838 4089 99.9 Plus
Blast to na_te.dros performed 2015-02-11 22:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2384 449..365 114 61.2 Minus

BO01551.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:04 Download gff for BO01551.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-PA 700..1527 15..843 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:24 Download gff for BO01551.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5069-PA 700..1527 15..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:25 Download gff for BO01551.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 985..1814 13..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:21 Download gff for BO01551.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 985..1814 13..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:21 Download gff for BO01551.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21474666..21475493 13..843 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:25 Download gff for BO01551.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21467766..21468593 13..843 99   Plus

BO01551.5prime Sequence

757 bp (690 high quality bases) assembled on 2005-11-30

> BO01551.5prime
GAAGTTATCAGTCGACATGCATACGTTATTCAGCGACCAGAACTCCTTTA
CGCGCCACTATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTG
GCGGCGGCCAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGA
CCAGTACTCCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCC
CGCACCAGAACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTG
ATAGCCATGGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGG
GATCTATCAGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGC
AGGGCTGGCAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTC
GTGAAGGTGGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGAC
TCTGGATCCGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCC
GGCGTCGCCGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCC
ATCAAGCGGCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCT
CAAGCTGATGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATG
CTGCCCACTTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGC
AAGGAGGTCTCCCATGGCCGCATGCTCAACTCCTGCCACGACAGCTTGGC
CCAAATG

BO01551.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5069-PA 1527 croc-RA 1..700 17..716 3500 100 Plus
CG5069-PA 1527 croc-RA 706..741 722..757 180 100 Plus
CG16738-PA 969 slp1-RA 477..534 343..400 165 91.3 Plus
CG1132-PA 1098 fd64A-RA 391..428 344..381 165 97.3 Plus
CG3668-PA 1371 fd59A-RA 384..446 355..417 140 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 285..1026 16..757 3665 99.7 Plus
fd59A-RA 2228 CG3668-RA 593..876 221..504 325 74.7 Plus
fd64A-RB 1414 CG1132-RB 486..669 223..406 290 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21475454..21476195 757..16 3650 99.5 Minus
2L 23513712 2L 3826211..3826373 294..456 245 76.7 Plus
3L 28110227 3L 4020416..4020478 344..406 240 92.1 Plus
3R 32079331 3R 25083588..25083851 224..487 225 72.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:16:19 has no hits.

BO01551.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:05 Download gff for BO01551.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-PA 1..741 17..757 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:25 Download gff for BO01551.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5069-PA 1..741 17..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:29:44 Download gff for BO01551.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 277..1026 7..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:37 Download gff for BO01551.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 277..1026 7..757 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:37 Download gff for BO01551.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21475454..21476203 7..757 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:29:44 Download gff for BO01551.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21468554..21469303 7..757 99   Minus

BO01551.complete Sequence

1558 bp (1558 high quality bases) assembled on 2006-04-03

GenBank Submission: FJ629537

> BO01551.complete
GAAGTTATCAGTCGACATGCATACGTTATTCAGCGACCAGAACTCCTTTA
CGCGCCACTATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTG
GCGGCGGCCAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGA
CCAGTACTCCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCC
CGCACCAGAACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTG
ATAGCCATGGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGG
GATCTATCAGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGC
AGGGCTGGCAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTC
GTGAAGGTGGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGAC
TCTGGATCCGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCC
GGCGTCGCCGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCC
ATCAAGCGGCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCT
CAAGCTGATGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATG
CTGCCCACTTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGC
AAGGAGGTCTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGGC
CCAAATGAACCACTTGGCTGGCGGCGGAGTGGAGCATCCCGGCTTCACCG
TGGACTCACTCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTAT
CCCTACCACTTGAACGAGGACAACTTGGCCACGGTGGCCAGCAGTCAGAT
GCATCATGTCCACCACGCTGCGGCGGCCCATCATGCCCAGCAACTGCAGC
GTCATGTGGCGCACGTGGCCCATCCTCTGACCCCCGGCGGCCAAGGAGCG
GGAGGCCAATCGTCCGGACACTCGCCCACCACGATCTCAACTCCGCATGG
TCCCGCGCACGGGGGTTGGTATACCCCGGAAACGCCACCATCGGAACCCG
TTCCTCACAATGGGCAGCAGGGCACACCCACCCACCCGGGACATAATAAC
AACAACAGCAGCAGCGTACTCAACCACAATGGAGTGGGCAACGGTGGCGG
AGGCGGCGGCGGTGGCGGTGGAGGATCCTCCAGCGTGCTGACCAGCAGTC
CCACATCGGCACTGGGTTTCCGCGACATGATCTTCGAGCAGAACCAATCC
TGCCAACTGGACACCGGTAGTCCCACCGGCAGCCTACAATCCGCCAGTCC
ACCTGCCTCCGCATCCGTGGCAGCGGCATCAGCGGCAGCAGCGGCGGCGG
TGATCAGTAGCCACCACCACCACCATCATCACCATGCGGCGCTTAGCGGG
AACCTGGGCCAGCTGGGTCAGCTGAGCAATCTGAGCCACTACCGACCGCA
TGTGGGCCACTACCAGGAGTACGGCATCAAGTACGGGGTGGCAAGCTTTC
TAGACCAT

BO01551.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 1527 CG5069-PA 1..1524 17..1540 7620 100 Plus
fd59A-RA 1371 CG3668-PA 250..533 221..504 310 73.9 Plus
fd64A-RB 1098 CG1132-PB 270..453 223..406 290 77.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 285..1809 16..1540 7625 100 Plus
fd64A-RB 1414 CG1132-RB 486..669 223..406 290 77.2 Plus
fd64A-RA 1372 CG1132-RA 444..627 223..406 290 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21474671..21476195 1540..16 7625 100 Minus
2L 23513712 2L 3826211..3826373 294..456 245 76.7 Plus
3L 28110227 3L 4020416..4020478 344..406 240 92.1 Plus
3R 32079331 3R 25083588..25083851 224..487 225 72.3 Plus
3R 32079331 3R 25095286..25095380 356..450 190 80 Plus
3R 32079331 3R 28583744..28583849 406..301 185 78.3 Minus
Blast to na_te.dros performed 2014-11-27 13:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2384 1110..1194 114 61.2 Plus

BO01551.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:12 Download gff for BO01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 1..1527 17..1544 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:18 Download gff for BO01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 354..1891 7..1546 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:27 Download gff for BO01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 286..1809 17..1542 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:12 Download gff for BO01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 354..1891 7..1546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:01 Download gff for BO01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 286..1809 17..1542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:01 Download gff for BO01551.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21474669..21476194 17..1542 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:27 Download gff for BO01551.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21467769..21469294 17..1542 99   Minus

BO01551.pep Sequence

Translation from 16 to 1558

> BO01551.pep
MHTLFSDQNSFTRHYAQTAAGYGSASAVAAASSASAAAAAHYAYDQYSRY
PYSASAYGLGAPHQNKEIVKPPYSYIALIAMAIQNAADKKVTLNGIYQYI
MERFPYYRDNKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTLDPDS
YNMFDNGSFLRRRRRFKKKDVMREKEEAIKRQAMMNEKLAEMKPLKLMTN
GILEAKHMAAHAAHFKKEPLMDLGCLSGKEVSHAAMLNSCHDSLAQMNHL
AGGGVEHPGFTVDSLMNVYNPRIHHSAYPYHLNEDNLATVASSQMHHVHH
AAAAHHAQQLQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGG
WYTPETPPSEPVPHNGQQGTPTHPGHNNNNSSSVLNHNGVGNGGGGGGGG
GGGSSSVLTSSPTSALGFRDMIFEQNQSCQLDTGSPTGSLQSASPPASAS
VAAASAAAAAAVISSHHHHHHHHAALSGNLGQLGQLSNLSHYRPHVGHYQ
EYGIKYGVASFLDH

BO01551.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
croc-PA 508 CG5069-PA 1..508 1..508 2729 100 Plus
fd59A-PA 456 CG3668-PA 8..188 1..173 400 47.8 Plus
fkh-PD 510 CG10002-PD 154..424 23..296 398 36.1 Plus
fkh-PB 510 CG10002-PB 154..424 23..296 398 36.1 Plus
fkh-PA 510 CG10002-PA 154..424 23..296 398 36.1 Plus