Clone Sequence Records
BO01566.3prime Sequence
856 bp (798 high quality bases) assembled on 2005-11-30
> BO01566.3prime
ATGGTCTAGAAAGCTTGCATAAATGGCCGGTGGTTGCATTTGGTATTCCC
CGCCCTCCTCCTCTTCACCATTACTGCTGCCCACACTGCCGGCGTAGTAG
AGTTGGTGTGGATTGTGTCCCTCCTCGTAGACCTGGAGGTGCTGCTGTAG
CTGCTGCTGATCAAAGCCCCCTCCTGACCCACTGGGACCTCCACTCTGCT
CAGTCTGGCAACCGCTTTGCAGGTGCTTGGCCAGCAGGGACATACGCGAG
AAGGACTTGGTGCAGGTGGGGCACGAGTACTTCTTCACATCCGAATGGGT
TTGCATGTGCGCGCGGAGATTTGACCTATCCGCGAAGGCCCGATTGCAGT
GTTGGCAACTGAAGGGCTTCTCTCCCGTGTGGGTGCGTATGTGACCCTGG
AGGAGCCATGGTCGCGAAAACGCCTTGCCGCAGATGGGACACTTGCAGGG
CAGGGTATGCGTGCGAATGTGCATCTTCAGGGCGCCCAAGGACACATAGG
TCTTGTCGCAGTTCTTGCAGCTGAAGACCTTCTTCACCTGATTGCCCTCG
GCCGACGGACAATGGAACTGCTGGTGCTTAGAGAGTCCCGAGTAGGTGGA
GTAGCTCTTTCCGCAATCCTGGCAATGGTATCGCGGCACTCCCACTGGCT
TTTGCATGCTCTGTGCTGAGGCTACATTAGCTGCCTGAATCAAAGCCGAA
GCTTGATCCGTGCAAAACTCGGTTTGGTCGACTATCGCACCTGATCCTCC
AGGCTGGCTTCTAATGATCTTGTACTCGGTGCTTTCGTAGGCGTGCGTTT
GTTGATGCTTTACCAATCCTGCATAGGTGGCATAGCACTTGTTGCACTGC
TGGCAC
BO01566.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4158-PA | 1647 | wor-RA | 807..1644 | 856..19 | 4190 | 100 | Minus |
CG3956-PA | 1173 | sna-RA | 880..998 | 483..365 | 245 | 88.2 | Minus |
CG3758-PA | 1413 | esg-RA | 982..1094 | 573..461 | 240 | 88.4 | Minus |
CG3758-PA | 1413 | esg-RA | 1123..1202 | 432..353 | 175 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wor-RA | 2222 | CG4158-RA | 957..1794 | 856..19 | 4190 | 100 | Minus |
esg-RA | 2273 | CG3758-RA | 1146..1559 | 637..224 | 875 | 81.3 | Minus |
sna-RA | 1668 | CG3956-RA | 913..1155 | 603..361 | 405 | 77.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15423725..15424562 | 19..856 | 4190 | 100 | Plus |
2L | 23513712 | 2L | 15335011..15335424 | 637..224 | 870 | 80.7 | Minus |
2L | 23513712 | 2L | 15477106..15477348 | 361..603 | 405 | 77.8 | Plus |
3L | 28110227 | 3L | 584769..584856 | 360..447 | 185 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:43:49 has no hits.
BO01566.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:18 Download gff for
BO01566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-PA | 807..1647 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:46 Download gff for
BO01566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4158-PA | 807..1647 | 15..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:26 Download gff for
BO01566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 957..1801 | 11..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:02 Download gff for
BO01566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 957..1801 | 11..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:02 Download gff for
BO01566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15423718..15424562 | 11..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:26 Download gff for
BO01566.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15423718..15424562 | 11..856 | 99 | | Plus |
BO01566.5prime Sequence
927 bp (755 high quality bases) assembled on 2005-11-30
> BO01566.5prime
GAAGTTATCAGTCGACATGGATAAACTCAAGTACAGCCGCTGCCCGCTCA
AGAAGCGTCCGATAATGGTGGAGGAGTCCAGCCCAGAGGATCACCTAAGT
CATGATGAAGGACCAGTGGACTTGAGTGTGGCCTCGGCTGCAGTGCCTAT
GGAGCCCCATTGGATGGCTAAATCCGAACCGGAACCTCAGCCGGTGCCCA
CGGAATTGAGGCGCCGCTTCGATGCAGCCATGAATCAGACCAAGGAGCAG
TTGGCCCGTCGCATTTGGGAGGAAACCCGTGAGATAGCCCGCGCTTTTCC
GGATGTCTTCACCCGGGAGGAAATCGCCAAGAGTCTTGCTCGCCTGGGTT
ACGGCGAGTTCGAGTTGCCACCTGAGGAGGAAGTAATGGAGCCGGAGCCG
GAACCAGAACAGCATCTGCCTCTTCGATATACAAGAGATGCTAGCCCAAC
CATCATCAAGGCTGAACCCTCTGATGAGGAACAATTTCCCCTGCGAAACT
ACAATAACAACCTACTCAAAAGCATAGCCGAGTATGAGGACTGTATGAAA
ATGCAGAACATCAAAGAGGAGATACCTCCGATTCCATCACCCCAGTTGTT
CTATCCACCCCCGACTCCACTGGCCGAACCGGAGGACCTATCCGTAACCC
AGAGGAGAGTGCTGAGCGAAAACATGAATCTGCAGAATGTGGCCAGAGCT
TTGCTGAGCATGCAACACATGGCTCCGCAACATGCGCCGCCTCCGATAGA
CATGGAAGAGGATCAGGAGAATCAGGACATCAACCAGCTGAAGATCANGA
GCAGCAATGATCTGTACTACCAGTGCCAGCAGTGCAACAAGTGCTATGCC
ACCTATGCAGGATTGGTAAAGCATCAACAAACGCACGCCTACGAAAAGCA
CCGAGTACAAGATCATTAAAAAGCCAG
BO01566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4158-PA | 1647 | wor-RA | 1..880 | 17..896 | 4381 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wor-RA | 2222 | CG4158-RA | 150..1059 | 16..927 | 4484 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15424468..15425281 | 918..104 | 4014 | 99.8 | Minus |
2L | 23513712 | 2L | 15425343..15425431 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:11:05 has no hits.
BO01566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:19 Download gff for
BO01566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-PA | 1..909 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:48 Download gff for
BO01566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4158-PA | 1..909 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:44:04 Download gff for
BO01566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 142..1059 | 7..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:49:52 Download gff for
BO01566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 142..1059 | 7..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:49:52 Download gff for
BO01566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15424460..15425280 | 105..927 | 99 | <- | Minus |
2L | 15425343..15425439 | 7..104 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:44:04 Download gff for
BO01566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15424460..15425280 | 105..927 | 99 | <- | Minus |
arm_2L | 15425343..15425439 | 7..104 | 95 | | Minus |
BO01566.complete Sequence
1678 bp (1678 high quality bases) assembled on 2010-01-14
GenBank Submission: FJ629538
> BO01566.complete
GAAGTTATCAGTCGACATGGATAAACTCAAGTACAGCCGCTGCCCGCTCA
AGAAGCGTCCGATAATGGTGGAGGAGTCCAGCCCAGAGGATCACCTAAGT
CATGATGAAGGACCAGTGGACTTGAGTGTGGCCTCGGCTGCAGTGCCTAT
GGAGCCCCATTGGATGGCTAAATCCGAACCGGAACCTCAGCCGGTGCCCA
CGGAATTGAGGCGCCGCTTCGATGCAGCCATGAATCAGACCAAGGAGCAG
TTGGCCCGTCGCATTTGGGAGGAAACCCGTGAGATAGCCCGCGCTTTTCC
GGATGTCTTCACCCGGGAGGAAATCGCCAAGAGTCTTGCTCGCCTGGGTT
ACGGCGAGTTCGAGTTGCCACCTGAGGAGGAAGTAATGGAGCCGGAGCCG
GAACCAGAACAGCATCTGCCTCTTCGATATACAAGAGATGCTAGCCCAAC
CATCATCAAGGCTGAACCCTCTGATGAGGAACAATTTCCCCTGCGAAACT
ACAATAACAACCTACTCAAAAGCATAGCCGAGTATGAGGACTGTATGAAA
ATGCAGAACATCAAAGAGGAGATACCTCCGATTCCATCACCCCAGTTGTT
CTATCCACCCCCGACTCCACTGGCCGAACCGGAGGACCTATCCGTAACCC
AGAGGAGAGTGCTGAGCGAAAACATGAATCTGCAGAATGTGGCCAGAGCT
TTGCTGAGCATGCAACACATGGCTCCGCAACATGCGCCGCCTCCGATAGA
CATGGAAGAGGATCAGGAGAATCAGGACATCAACCAGCTGAAGATCAAGA
GCAGCAATGATCTGTACTACCAGTGCCAGCAGTGCAACAAGTGCTATGCC
ACCTATGCAGGATTGGTAAAGCATCAACAAACGCACGCCTACGAAAGCAC
CGAGTACAAGATCATTAGAAGCCAGCCTGGAGGATCAGGTGCGATAGTCG
ACCAAACCGAGTTTTGCACGGATCAAGCTTCGGCTTTGATTCAGGCAGCT
AATGTAGCCTCAGCACAGAGCATGCAAAAGCCAGTGGGAGTGCCGCGATA
CCATTGCCAGGATTGCGGAAAGAGCTACTCCACCTACTCGGGACTCTCTA
AGCACCAGCAGTTCCATTGTCCGTCGGCCGAGGGCAATCAGGTGAAGAAG
GTCTTCAGCTGCAAGAACTGCGACAAGACCTATGTGTCCTTGGGCGCCCT
GAAGATGCACATTCGCACGCATACCCTGCCCTGCAAGTGTCCCATCTGCG
GCAAGGCGTTTTCGCGACCATGGCTCCTCCAGGGTCACATACGCACCCAC
ACGGGAGAGAAGCCCTTCAGTTGCCAACACTGCAATCGGGCCTTCGCGGA
TAGGTCAAATCTCCGCGCGCACATGCAAACCCATTCGGATGTGAAGAAGT
ACTCGTGCCCCACCTGCACCAAGTCCTTCTCGCGTATGTCCCTGCTGGCC
AAGCACCTGCAAAGCGGTTGCCAGACTGAGCAGAGTGGAGGTCCCAGTGG
GTCAGGAGGGGGCTTTGATCAGCAGCAGCTACAGCAGCACCTCCAGGTCT
ACGAGGAGGGACACAATCCACACCAACTCTACTACGCCGGCAGTGTGGGC
AGCAGTAATGGTGAAGAGGAGGAGGGCGGGGAATACCAAATGCAACCACC
GGCCATTTATGCAAGCTTTCTAGACCAT
BO01566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wor-RA | 1647 | CG4158-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
esg-RA | 1413 | CG3758-PA | 918..1331 | 1042..1455 | 870 | 80.7 | Plus |
sna-RA | 1173 | CG3956-PA | 760..1002 | 1076..1318 | 405 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wor-RA | 2222 | CG4158-RA | 150..1794 | 16..1660 | 8225 | 100 | Plus |
esg-RA | 2273 | CG3758-RA | 1146..1559 | 1042..1455 | 870 | 80.7 | Plus |
sna-RA | 1668 | CG3956-RA | 913..1155 | 1076..1318 | 405 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15423725..15425281 | 1660..104 | 7785 | 100 | Minus |
2L | 23513712 | 2L | 15335011..15335424 | 1042..1455 | 870 | 80.7 | Plus |
2L | 23513712 | 2L | 15425343..15425431 | 104..16 | 445 | 100 | Minus |
2L | 23513712 | 2L | 15477106..15477348 | 1318..1076 | 405 | 77.8 | Minus |
3L | 28110227 | 3L | 584769..584856 | 1319..1232 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:51:27 has no hits.
BO01566.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:05 Download gff for
BO01566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 1..1647 | 17..1664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:02 Download gff for
BO01566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 156..1799 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:23 Download gff for
BO01566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 151..1794 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:05 Download gff for
BO01566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 147..1806 | 7..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:41 Download gff for
BO01566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wor-RA | 151..1794 | 17..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:41 Download gff for
BO01566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15423723..15425280 | 105..1662 | 99 | <- | Minus |
2L | 15425343..15425430 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:23 Download gff for
BO01566.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15425343..15425430 | 17..104 | 100 | | Minus |
arm_2L | 15423723..15425280 | 105..1662 | 99 | <- | Minus |
BO01566.pep Sequence
Translation from 16 to 1678
> BO01566.pep
MDKLKYSRCPLKKRPIMVEESSPEDHLSHDEGPVDLSVASAAVPMEPHWM
AKSEPEPQPVPTELRRRFDAAMNQTKEQLARRIWEETREIARAFPDVFTR
EEIAKSLARLGYGEFELPPEEEVMEPEPEPEQHLPLRYTRDASPTIIKAE
PSDEEQFPLRNYNNNLLKSIAEYEDCMKMQNIKEEIPPIPSPQLFYPPPT
PLAEPEDLSVTQRRVLSENMNLQNVARALLSMQHMAPQHAPPPIDMEEDQ
ENQDINQLKIKSSNDLYYQCQQCNKCYATYAGLVKHQQTHAYESTEYKII
RSQPGGSGAIVDQTEFCTDQASALIQAANVASAQSMQKPVGVPRYHCQDC
GKSYSTYSGLSKHQQFHCPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIR
THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADRSNLR
AHMQTHSDVKKYSCPTCTKSFSRMSLLAKHLQSGCQTEQSGGPSGSGGGF
DQQQLQQHLQVYEEGHNPHQLYYAGSVGSSNGEEEEGGEYQMQPPAIYAS
FLDH
BO01566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wor-PA | 548 | CG4158-PA | 1..548 | 1..548 | 2956 | 100 | Plus |
esg-PA | 470 | CG3758-PA | 296..460 | 329..496 | 723 | 75.6 | Plus |
sna-PA | 390 | CG3956-PA | 207..385 | 302..485 | 605 | 61.4 | Plus |
CG12605-PC | 474 | CG12605-PC | 294..442 | 345..497 | 454 | 54.9 | Plus |
Kah-PA | 442 | CG17181-PA | 121..270 | 347..499 | 452 | 53.9 | Plus |