Clone BO01566 Report

Search the DGRC for BO01566

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptwor-RA
Protein status:BO01566.pep: Imported from assembly
Sequenced Size:1678

Clone Sequence Records

BO01566.3prime Sequence

856 bp (798 high quality bases) assembled on 2005-11-30

> BO01566.3prime
ATGGTCTAGAAAGCTTGCATAAATGGCCGGTGGTTGCATTTGGTATTCCC
CGCCCTCCTCCTCTTCACCATTACTGCTGCCCACACTGCCGGCGTAGTAG
AGTTGGTGTGGATTGTGTCCCTCCTCGTAGACCTGGAGGTGCTGCTGTAG
CTGCTGCTGATCAAAGCCCCCTCCTGACCCACTGGGACCTCCACTCTGCT
CAGTCTGGCAACCGCTTTGCAGGTGCTTGGCCAGCAGGGACATACGCGAG
AAGGACTTGGTGCAGGTGGGGCACGAGTACTTCTTCACATCCGAATGGGT
TTGCATGTGCGCGCGGAGATTTGACCTATCCGCGAAGGCCCGATTGCAGT
GTTGGCAACTGAAGGGCTTCTCTCCCGTGTGGGTGCGTATGTGACCCTGG
AGGAGCCATGGTCGCGAAAACGCCTTGCCGCAGATGGGACACTTGCAGGG
CAGGGTATGCGTGCGAATGTGCATCTTCAGGGCGCCCAAGGACACATAGG
TCTTGTCGCAGTTCTTGCAGCTGAAGACCTTCTTCACCTGATTGCCCTCG
GCCGACGGACAATGGAACTGCTGGTGCTTAGAGAGTCCCGAGTAGGTGGA
GTAGCTCTTTCCGCAATCCTGGCAATGGTATCGCGGCACTCCCACTGGCT
TTTGCATGCTCTGTGCTGAGGCTACATTAGCTGCCTGAATCAAAGCCGAA
GCTTGATCCGTGCAAAACTCGGTTTGGTCGACTATCGCACCTGATCCTCC
AGGCTGGCTTCTAATGATCTTGTACTCGGTGCTTTCGTAGGCGTGCGTTT
GTTGATGCTTTACCAATCCTGCATAGGTGGCATAGCACTTGTTGCACTGC
TGGCAC

BO01566.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4158-PA 1647 wor-RA 807..1644 856..19 4190 100 Minus
CG3956-PA 1173 sna-RA 880..998 483..365 245 88.2 Minus
CG3758-PA 1413 esg-RA 982..1094 573..461 240 88.4 Minus
CG3758-PA 1413 esg-RA 1123..1202 432..353 175 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
wor-RA 2222 CG4158-RA 957..1794 856..19 4190 100 Minus
esg-RA 2273 CG3758-RA 1146..1559 637..224 875 81.3 Minus
sna-RA 1668 CG3956-RA 913..1155 603..361 405 77.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15423725..15424562 19..856 4190 100 Plus
2L 23513712 2L 15335011..15335424 637..224 870 80.7 Minus
2L 23513712 2L 15477106..15477348 361..603 405 77.8 Plus
3L 28110227 3L 584769..584856 360..447 185 80.7 Plus
Blast to na_te.dros performed on 2015-02-11 15:43:49 has no hits.

BO01566.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:18 Download gff for BO01566.3prime
Subject Subject Range Query Range Percent Splice Strand
wor-PA 807..1647 15..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:46 Download gff for BO01566.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4158-PA 807..1647 15..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:26 Download gff for BO01566.3prime
Subject Subject Range Query Range Percent Splice Strand
wor-RA 957..1801 11..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:02 Download gff for BO01566.3prime
Subject Subject Range Query Range Percent Splice Strand
wor-RA 957..1801 11..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:02 Download gff for BO01566.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15423718..15424562 11..856 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:26 Download gff for BO01566.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15423718..15424562 11..856 99   Plus

BO01566.5prime Sequence

927 bp (755 high quality bases) assembled on 2005-11-30

> BO01566.5prime
GAAGTTATCAGTCGACATGGATAAACTCAAGTACAGCCGCTGCCCGCTCA
AGAAGCGTCCGATAATGGTGGAGGAGTCCAGCCCAGAGGATCACCTAAGT
CATGATGAAGGACCAGTGGACTTGAGTGTGGCCTCGGCTGCAGTGCCTAT
GGAGCCCCATTGGATGGCTAAATCCGAACCGGAACCTCAGCCGGTGCCCA
CGGAATTGAGGCGCCGCTTCGATGCAGCCATGAATCAGACCAAGGAGCAG
TTGGCCCGTCGCATTTGGGAGGAAACCCGTGAGATAGCCCGCGCTTTTCC
GGATGTCTTCACCCGGGAGGAAATCGCCAAGAGTCTTGCTCGCCTGGGTT
ACGGCGAGTTCGAGTTGCCACCTGAGGAGGAAGTAATGGAGCCGGAGCCG
GAACCAGAACAGCATCTGCCTCTTCGATATACAAGAGATGCTAGCCCAAC
CATCATCAAGGCTGAACCCTCTGATGAGGAACAATTTCCCCTGCGAAACT
ACAATAACAACCTACTCAAAAGCATAGCCGAGTATGAGGACTGTATGAAA
ATGCAGAACATCAAAGAGGAGATACCTCCGATTCCATCACCCCAGTTGTT
CTATCCACCCCCGACTCCACTGGCCGAACCGGAGGACCTATCCGTAACCC
AGAGGAGAGTGCTGAGCGAAAACATGAATCTGCAGAATGTGGCCAGAGCT
TTGCTGAGCATGCAACACATGGCTCCGCAACATGCGCCGCCTCCGATAGA
CATGGAAGAGGATCAGGAGAATCAGGACATCAACCAGCTGAAGATCANGA
GCAGCAATGATCTGTACTACCAGTGCCAGCAGTGCAACAAGTGCTATGCC
ACCTATGCAGGATTGGTAAAGCATCAACAAACGCACGCCTACGAAAAGCA
CCGAGTACAAGATCATTAAAAAGCCAG

BO01566.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4158-PA 1647 wor-RA 1..880 17..896 4381 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
wor-RA 2222 CG4158-RA 150..1059 16..927 4484 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15424468..15425281 918..104 4014 99.8 Minus
2L 23513712 2L 15425343..15425431 104..16 445 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:11:05 has no hits.

BO01566.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:19 Download gff for BO01566.5prime
Subject Subject Range Query Range Percent Splice Strand
wor-PA 1..909 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:32:48 Download gff for BO01566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4158-PA 1..909 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:44:04 Download gff for BO01566.5prime
Subject Subject Range Query Range Percent Splice Strand
wor-RA 142..1059 7..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:49:52 Download gff for BO01566.5prime
Subject Subject Range Query Range Percent Splice Strand
wor-RA 142..1059 7..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:49:52 Download gff for BO01566.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15424460..15425280 105..927 99 <- Minus
2L 15425343..15425439 7..104 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:44:04 Download gff for BO01566.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15424460..15425280 105..927 99 <- Minus
arm_2L 15425343..15425439 7..104 95   Minus

BO01566.complete Sequence

1678 bp (1678 high quality bases) assembled on 2010-01-14

GenBank Submission: FJ629538

> BO01566.complete
GAAGTTATCAGTCGACATGGATAAACTCAAGTACAGCCGCTGCCCGCTCA
AGAAGCGTCCGATAATGGTGGAGGAGTCCAGCCCAGAGGATCACCTAAGT
CATGATGAAGGACCAGTGGACTTGAGTGTGGCCTCGGCTGCAGTGCCTAT
GGAGCCCCATTGGATGGCTAAATCCGAACCGGAACCTCAGCCGGTGCCCA
CGGAATTGAGGCGCCGCTTCGATGCAGCCATGAATCAGACCAAGGAGCAG
TTGGCCCGTCGCATTTGGGAGGAAACCCGTGAGATAGCCCGCGCTTTTCC
GGATGTCTTCACCCGGGAGGAAATCGCCAAGAGTCTTGCTCGCCTGGGTT
ACGGCGAGTTCGAGTTGCCACCTGAGGAGGAAGTAATGGAGCCGGAGCCG
GAACCAGAACAGCATCTGCCTCTTCGATATACAAGAGATGCTAGCCCAAC
CATCATCAAGGCTGAACCCTCTGATGAGGAACAATTTCCCCTGCGAAACT
ACAATAACAACCTACTCAAAAGCATAGCCGAGTATGAGGACTGTATGAAA
ATGCAGAACATCAAAGAGGAGATACCTCCGATTCCATCACCCCAGTTGTT
CTATCCACCCCCGACTCCACTGGCCGAACCGGAGGACCTATCCGTAACCC
AGAGGAGAGTGCTGAGCGAAAACATGAATCTGCAGAATGTGGCCAGAGCT
TTGCTGAGCATGCAACACATGGCTCCGCAACATGCGCCGCCTCCGATAGA
CATGGAAGAGGATCAGGAGAATCAGGACATCAACCAGCTGAAGATCAAGA
GCAGCAATGATCTGTACTACCAGTGCCAGCAGTGCAACAAGTGCTATGCC
ACCTATGCAGGATTGGTAAAGCATCAACAAACGCACGCCTACGAAAGCAC
CGAGTACAAGATCATTAGAAGCCAGCCTGGAGGATCAGGTGCGATAGTCG
ACCAAACCGAGTTTTGCACGGATCAAGCTTCGGCTTTGATTCAGGCAGCT
AATGTAGCCTCAGCACAGAGCATGCAAAAGCCAGTGGGAGTGCCGCGATA
CCATTGCCAGGATTGCGGAAAGAGCTACTCCACCTACTCGGGACTCTCTA
AGCACCAGCAGTTCCATTGTCCGTCGGCCGAGGGCAATCAGGTGAAGAAG
GTCTTCAGCTGCAAGAACTGCGACAAGACCTATGTGTCCTTGGGCGCCCT
GAAGATGCACATTCGCACGCATACCCTGCCCTGCAAGTGTCCCATCTGCG
GCAAGGCGTTTTCGCGACCATGGCTCCTCCAGGGTCACATACGCACCCAC
ACGGGAGAGAAGCCCTTCAGTTGCCAACACTGCAATCGGGCCTTCGCGGA
TAGGTCAAATCTCCGCGCGCACATGCAAACCCATTCGGATGTGAAGAAGT
ACTCGTGCCCCACCTGCACCAAGTCCTTCTCGCGTATGTCCCTGCTGGCC
AAGCACCTGCAAAGCGGTTGCCAGACTGAGCAGAGTGGAGGTCCCAGTGG
GTCAGGAGGGGGCTTTGATCAGCAGCAGCTACAGCAGCACCTCCAGGTCT
ACGAGGAGGGACACAATCCACACCAACTCTACTACGCCGGCAGTGTGGGC
AGCAGTAATGGTGAAGAGGAGGAGGGCGGGGAATACCAAATGCAACCACC
GGCCATTTATGCAAGCTTTCTAGACCAT

BO01566.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
wor-RA 1647 CG4158-PA 1..1644 17..1660 8220 100 Plus
esg-RA 1413 CG3758-PA 918..1331 1042..1455 870 80.7 Plus
sna-RA 1173 CG3956-PA 760..1002 1076..1318 405 77.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
wor-RA 2222 CG4158-RA 150..1794 16..1660 8225 100 Plus
esg-RA 2273 CG3758-RA 1146..1559 1042..1455 870 80.7 Plus
sna-RA 1668 CG3956-RA 913..1155 1076..1318 405 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15423725..15425281 1660..104 7785 100 Minus
2L 23513712 2L 15335011..15335424 1042..1455 870 80.7 Plus
2L 23513712 2L 15425343..15425431 104..16 445 100 Minus
2L 23513712 2L 15477106..15477348 1318..1076 405 77.8 Minus
3L 28110227 3L 584769..584856 1319..1232 185 80.7 Minus
Blast to na_te.dros performed on 2014-11-27 00:51:27 has no hits.

BO01566.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:05 Download gff for BO01566.complete
Subject Subject Range Query Range Percent Splice Strand
wor-RA 1..1647 17..1664 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:06:02 Download gff for BO01566.complete
Subject Subject Range Query Range Percent Splice Strand
wor-RA 156..1799 17..1662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:23 Download gff for BO01566.complete
Subject Subject Range Query Range Percent Splice Strand
wor-RA 151..1794 17..1662 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:05 Download gff for BO01566.complete
Subject Subject Range Query Range Percent Splice Strand
wor-RA 147..1806 7..1668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:41 Download gff for BO01566.complete
Subject Subject Range Query Range Percent Splice Strand
wor-RA 151..1794 17..1662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:41 Download gff for BO01566.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15423723..15425280 105..1662 99 <- Minus
2L 15425343..15425430 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:23 Download gff for BO01566.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15425343..15425430 17..104 100   Minus
arm_2L 15423723..15425280 105..1662 99 <- Minus

BO01566.pep Sequence

Translation from 16 to 1678

> BO01566.pep
MDKLKYSRCPLKKRPIMVEESSPEDHLSHDEGPVDLSVASAAVPMEPHWM
AKSEPEPQPVPTELRRRFDAAMNQTKEQLARRIWEETREIARAFPDVFTR
EEIAKSLARLGYGEFELPPEEEVMEPEPEPEQHLPLRYTRDASPTIIKAE
PSDEEQFPLRNYNNNLLKSIAEYEDCMKMQNIKEEIPPIPSPQLFYPPPT
PLAEPEDLSVTQRRVLSENMNLQNVARALLSMQHMAPQHAPPPIDMEEDQ
ENQDINQLKIKSSNDLYYQCQQCNKCYATYAGLVKHQQTHAYESTEYKII
RSQPGGSGAIVDQTEFCTDQASALIQAANVASAQSMQKPVGVPRYHCQDC
GKSYSTYSGLSKHQQFHCPSAEGNQVKKVFSCKNCDKTYVSLGALKMHIR
THTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFADRSNLR
AHMQTHSDVKKYSCPTCTKSFSRMSLLAKHLQSGCQTEQSGGPSGSGGGF
DQQQLQQHLQVYEEGHNPHQLYYAGSVGSSNGEEEEGGEYQMQPPAIYAS
FLDH

BO01566.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
wor-PA 548 CG4158-PA 1..548 1..548 2956 100 Plus
esg-PA 470 CG3758-PA 296..460 329..496 723 75.6 Plus
sna-PA 390 CG3956-PA 207..385 302..485 605 61.4 Plus
CG12605-PC 474 CG12605-PC 294..442 345..497 454 54.9 Plus
Kah-PA 442 CG17181-PA 121..270 347..499 452 53.9 Plus