Clone BO01576 Report

Search the DGRC for BO01576

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptnub-RD
Protein status:BO01576.pep: validated full length
Sequenced Size:1837

Clone Sequence Records

BO01576.3prime Sequence

964 bp (805 high quality bases) assembled on 2005-11-30

> BO01576.3prime
ATGGTCTAGAAAGCTTGCGTGCATCATATAGGAGGACTCGTCGTCATCGG
CGCCCGTGGGACTGTCCAGGGAGGGATTGATGCGCTTCTCCTTCTGCCGA
CGGTTGCAGAACCACACGCGCACCACCTCCTTCTCCATGCTCAGACGATC
GGCCAGCTGAGTGATCTCCTCTGAGGTGGGCTTCTGGTTGGCCAGAAAGG
CCTTCTCCAGAGCACCGCGAATGGTGGTCTCGATGGAGGTGCGCTTCTTG
CGACGGCGACCAATGATCTCCGGTGTGCTGACGGTGGCCTGCAAGGCGGC
AGGATCGAAGACACCACCGGTGGCCTGGATGGTGCGATCGGCGTCATCCA
ACCACTTCTGGAGCAGCGGCTTCAGCTTGCACATGTTCTTGAAGCTCAGA
TTGAGGGCCTCGAAACGTGAAATGGTGGTCTGCGAGAAGTCATTGCCATA
CAGTTTGCCCATGGCCAGACCCACATCGCCCTGGGTGAAGCCCAGCTTGA
TTCGCCGCTGCTTGAAGGTCTTGGCAAACTGCTCCAACTCTTCTAGATCG
GTGGTTTCCTCCGGCGATGGCTCGCCCGCTGCCCGAGCAGCTGCAGCACT
GGCCACCGTCTTGGGCTGCGGCGTGGTGGTGCCCTGGCTCATCTGGGTGC
CACTGGTGGGCGTACTGGGCGTCAGCATACCACTCAATTTCAAACTGGCC
GCCGAGCTGGGCGGCGTGATTTGCAGTGGATGGTGGTGGTGATGGTGCAA
CTGCTGGGGTGAGCTGGCCGGACTGCGAATTGCGATGGGGCTGCGGATCG
AGTGCGGTGTGGAACTGCGTGGCTGTTGCGTCATCTTGTGGGTCAGCTGC
AGTGGCTCATCCACCTGGCGCTGCTGTTGCTTCTGCAGTGCCTGGCATTG
CTGACTGGNCTGACTGAGGGGCTGCAGTTGGCTCTGCATTAGGAACTGGG
CTGCCGCCACCTGG

BO01576.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6246-PA 1806 nub-RA 858..1803 964..19 4611 99.4 Minus
CG12287-PB 2682 pdm2-RB 2071..2246 531..356 755 97.1 Minus
CG12287-PA 1497 pdm2-RA 886..1061 531..356 755 97.1 Minus
CG10037-PA 1284 vvl-RA 796..843 399..352 215 97.9 Minus
CG10037-PA 1284 vvl-RA 1028..1085 137..80 215 94.8 Minus
CG12287-PB 2682 pdm2-RB 2472..2546 139..65 175 89.3 Minus
CG12287-PA 1497 pdm2-RA 1309..1361 117..65 165 92.4 Minus
CG10037-PA 1284 vvl-RA 679..731 516..464 165 92.4 Minus
CG12287-PB 2682 pdm2-RB 2359..2387 252..224 145 100 Minus
CG12287-PA 1497 pdm2-RA 1174..1202 252..224 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
nub-RE 2829 CG34395-RE 1071..2016 964..19 4659 99.5 Minus
nub-RD 3267 CG34395-RD 1509..2454 964..19 4659 99.5 Minus
nub-RB 4497 CG34395-RB 2739..3684 964..19 4659 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12626137..12627082 964..19 4659 99.5 Minus
2L 23513712 2L 12685177..12685398 568..347 900 93.7 Minus
3L 28110227 3L 6791492..6791673 528..347 505 85.2 Minus
2L 23513712 2L 12685502..12685689 252..65 445 82.4 Minus
3L 28110227 3L 6791853..6791910 137..80 245 94.8 Minus
Blast to na_te.dros performed 2015-02-12 16:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6903 936..778 135 61.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2372 892..815 113 62 Minus
roo 9092 roo DM_ROO 9092bp 1088..1145 903..846 110 65.5 Minus

BO01576.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:27 Download gff for BO01576.3prime
Subject Subject Range Query Range Percent Splice Strand
nub-PA 858..1806 15..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:02 Download gff for BO01576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6246-PA 858..1806 15..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:45 Download gff for BO01576.3prime
Subject Subject Range Query Range Percent Splice Strand
nub-RB 2739..3688 14..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:28 Download gff for BO01576.3prime
Subject Subject Range Query Range Percent Splice Strand
nub-RB 2739..3688 14..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:28 Download gff for BO01576.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12626137..12627086 14..964 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:45 Download gff for BO01576.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12626137..12627086 14..964 99   Minus

BO01576.5prime Sequence

900 bp (699 high quality bases) assembled on 2005-11-30

> BO01576.5prime
GAAGTTATCAGTCGACATGGTTATGTCGGAGCTACGTTGGCACACCGCTA
GTCCCGAGGATAATAAGAATTCCTTGAAGCGCGATTTGCTCAAATCCACA
CCAACCAGTGCCCGCGAGGCCGCCGTTCACATAATGCAGAATCGATATAT
CAGTCGCCTGTCGCGTTCGCCATCGCCACTTCAATCGAATGCTTCCGATT
GCGATGATAACAACTCGAGTGTGGGCACCTCGAGCGATCGCTGCCGATCT
CCTTTGAGTCCTGCGCTCTCCTTGAGCCACCAGCAGGCCAAACGCCAGCT
GATGTCGCTGCAGCCCCACCCGGCACACCATCATCACAATCCGCACCATT
TGAACCACCTGAACCACCATCAGTACAAACAGGAGGAGGATTACGATGAC
GCCAATGGTGGGGCATTGAATTTAACCAGCGACAATAGTCGCCACAGCAC
TCAGTCTCCATCGAATTCGGTGAAATCGGCCACAGCATCGCCGGTTCCGG
TAATTTCAGTGCCCTCGCCAGTGCCGCCCATGATCTCTCCGGTTTTGGCT
CCCTCGGGTTGTGGCTCCACCACACCCAATTCCATGGCAGCAGCGGCTGC
AGCCGCCGCCGCTGTGGCATCCACCATGGGTAGTGGCATCTCGCCGTTGC
TGGCCCTGCCGGGAATGTCCTCGCCACAGGCTCAACTCGCAGCAGCTGGC
TTGGGCATGAACAATCCACTGCTGACTGGATCACTGTCGCCACAGGATTT
TGCCCAGTTCCATCAGCTATTGCAGCAACGTCAAGTTGCGTTGACACAGC
AGTTCAACAGCTACATGGAGCTGCTGCGAAGTGGTTCCCTGGGGCTGGCA
CANGACGATCCGGCACTGACCGCCCAGGTGGCGGCAGCCCAGTTCCTAAT

BO01576.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6246-PA 1806 nub-RA 1..884 17..900 4376 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
nub-RE 2829 CG34395-RE 214..1097 17..900 4394 99.8 Plus
nub-RD 3267 CG34395-RD 652..1535 17..900 4394 99.8 Plus
nub-RB 4497 CG34395-RB 2012..2765 147..900 3744 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12625454..12626163 191..900 3524 99.7 Plus
2L 23513712 2L 12618996..12619125 17..146 650 100 Plus
2L 23513712 2L 12622975..12623019 147..191 225 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:02:19 has no hits.

BO01576.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:28 Download gff for BO01576.5prime
Subject Subject Range Query Range Percent Splice Strand
nub-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:03 Download gff for BO01576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6246-PA 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:27 Download gff for BO01576.5prime
Subject Subject Range Query Range Percent Splice Strand
nub-RD 646..1535 11..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:39 Download gff for BO01576.5prime
Subject Subject Range Query Range Percent Splice Strand
nub-RD 646..1535 11..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:39 Download gff for BO01576.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12618990..12619125 11..146 97 -> Plus
2L 12622975..12623019 147..191 100 -> Plus
2L 12625455..12626163 192..900 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:27 Download gff for BO01576.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12618990..12619125 11..146 97 -> Plus
arm_2L 12622975..12623019 147..191 100 -> Plus
arm_2L 12625455..12626163 192..900 99   Plus

BO01576.complete Sequence

1837 bp (1837 high quality bases) assembled on 2006-04-03

GenBank Submission: FJ629539

> BO01576.complete
GAAGTTATCAGTCGACATGGTTATGTCGGAGCTACGTTGGCACACCGCTA
GTCCCGAGGATAATAAGAATTCCTTGAAGCGCGATTTGCTCAAATCCACA
CCAACCAGTGCCCGCGAGGCCGCCGTTCACATAATGCAGAATCGATATAT
CAGTCGCCTGTCGCGTTCGCCATCGCCACTTCAATCGAATGCTTCCGATT
GCGATGATAACAACTCGAGTGTGGGCACCTCGAGCGATCGCTGCCGATCT
CCTTTGAGTCCTGCGCTCTCCTTGAGCCACCAGCAGGCCAAACGCCAGCT
GATGTCGCTGCAGCCCCACCCGGCACACCATCATCACAATCCGCACCATT
TGAACCACCTGAACCACCATCAGTACAAACAGGAGGAGGATTACGATGAC
GCCAATGGTGGGGCATTGAATTTAACCAGCGACAATAGTCGCCACAGCAC
TCAGTCTCCATCGAATTCGGTGAAATCGGCCACAGCATCGCCGGTTCCGG
TAATTTCAGTGCCCTCGCCAGTGCCGCCCATGATCTCTCCGGTTTTGGCT
CCCTCGGGTTGTGGCTCCACCACACCCAATTCCATGGCAGCAGCGGCTGC
AGCCGCCGCCGCTGTGGCATCCACCATGGGTAGTGGCATCTCGCCGTTGC
TGGCCCTGCCGGGAATGTCCTCGCCACAGGCTCAACTCGCAGCAGCTGGC
TTGGGCATGAACAATCCACTGCTGACTGGATCACTGTCGCCACAGGATTT
TGCCCAGTTCCATCAGCTATTGCAGCAACGTCAAGTTGCGTTGACACAGC
AGTTCAACAGCTACATGGAGCTGCTGCGAAGTGGTTCCCTGGGCCTGGCA
CAGGACGATCCGGCACTGACCGCCCAGGTGGCGGCAGCCCAGTTCCTAAT
GCAGAGCCAACTGCAGGCCCTCAGTCAGGCCAGTCAGCAATTGCAGGCAC
TGCAGAAGCAACAGCAGCGCCAGGTGGATGAGCCACTGCAGCTGAACCAC
AAGATGACGCAACAGCCACGCAGTTCCACACCGCACTCGATCCGCAGCCC
CATCGCAATTCGCAGTCCGGCCAGCTCACCCCAGCAGTTGCACCATCACC
ACCACCATCCACTGCAAATCACGCCGCCCAGCTCGGCGGCCAGTTTGAAA
TTGAGTGGTATGCTGACGCCCAGTACGCCCACCAGTGGCACCCAGATGAG
CCAGGGCACCACCACGCCGCAGCCCAAGACGGTGGCCAGTGCTGCAGCTG
CTCGGGCAGCGGGCGAGCCATCGCCGGAGGAAACCACCGATCTAGAAGAG
TTGGAGCAGTTTGCCAAGACCTTCAAGCAGCGGCGAATCAAGCTGGGCTT
CACCCAGGGCGATGTGGGTCTGGCCATGGGCAAACTGTATGGCAATGACT
TCTCGCAGACCACCATTTCACGTTTCGAGGCCCTCAATCTGAGCTTCAAG
AACATGTGCAAGCTGAAGCCGCTGCTCCAGAAGTGGTTGGATGACGCCGA
TCGCACCATCCAGGCCACCGGTGGTGTCTTCGATCCTGCCGCCTTGCAGG
CCACCGTCAGCACACCGGAGATCATTGGTCGCCGTCGCAAGAAGCGCACC
TCCATCGAGACCACCATTCGCGGTGCTCTGGAGAAGGCCTTTCTGGCCAA
CCAGAAGCCCACCTCAGAGGAGATCACTCAGCTGGCCGATCGTCTGAGCA
TGGAGAAGGAGGTGGTGCGCGTGTGGTTCTGCAACCGTCGGCAGAAGGAG
AAGCGCATCAATCCCTCCCTGGACAGTCCCACGGGCGCCGATGACGACGA
GTCCTCCTATATGATGCACGCAAGCTTTCTAGACCAT

BO01576.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
nub-RE 1806 CG34395-PE 1..1803 17..1819 9015 100 Plus
nub-RD 1806 CG34395-PD 1..1803 17..1819 9015 100 Plus
nub-RB 2886 CG34395-PB 1211..2883 147..1819 8365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
nub-RE 2829 CG34395-RE 214..2016 17..1819 9015 100 Plus
nub-RD 3267 CG34395-RD 652..2454 17..1819 9015 100 Plus
nub-RB 4497 CG34395-RB 2012..3684 147..1819 8365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12625454..12627082 191..1819 8145 100 Plus
2L 23513712 2L 12685177..12685398 1270..1491 900 93.7 Plus
2L 23513712 2L 12618996..12619125 17..146 650 100 Plus
3L 28110227 3L 6791492..6791673 1310..1491 505 85.2 Plus
2L 23513712 2L 12685502..12685689 1586..1773 445 82.4 Plus
3L 28110227 3L 6791853..6791910 1701..1758 245 94.8 Plus
2L 23513712 2L 12622975..12623019 147..191 225 100 Plus
Blast to na_te.dros performed 2014-11-28 00:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2297..2537 898..1142 172 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6903 902..1060 134 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1088..1153 935..1002 128 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2372 946..1023 122 63.3 Plus
roo 9092 roo DM_ROO 9092bp 1060..1178 889..1007 119 59.3 Plus

BO01576.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:56 Download gff for BO01576.complete
Subject Subject Range Query Range Percent Splice Strand
nub-RD 1..1806 17..1823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:04 Download gff for BO01576.complete
Subject Subject Range Query Range Percent Splice Strand
nub-RD 643..2455 11..1824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:40 Download gff for BO01576.complete
Subject Subject Range Query Range Percent Splice Strand
nub-RD 652..2454 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:57 Download gff for BO01576.complete
Subject Subject Range Query Range Percent Splice Strand
nub-RD 643..2455 11..1824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:09 Download gff for BO01576.complete
Subject Subject Range Query Range Percent Splice Strand
nub-RD 652..2454 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:09 Download gff for BO01576.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12618996..12619125 17..146 100 -> Plus
2L 12622975..12623019 147..191 100 -> Plus
2L 12625455..12627082 192..1821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:40 Download gff for BO01576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12618996..12619125 17..146 100 -> Plus
arm_2L 12622975..12623019 147..191 100 -> Plus
arm_2L 12625455..12627082 192..1821 99   Plus

BO01576.pep Sequence

Translation from 16 to 1837

> BO01576.pep
MVMSELRWHTASPEDNKNSLKRDLLKSTPTSAREAAVHIMQNRYISRLSR
SPSPLQSNASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQP
HPAHHHHNPHHLNHLNHHQYKQEEDYDDANGGALNLTSDNSRHSTQSPSN
SVKSATASPVPVISVPSPVPPMISPVLAPSGCGSTTPNSMAAAAAAAAAV
ASTMGSGISPLLALPGMSSPQAQLAAAGLGMNNPLLTGSLSPQDFAQFHQ
LLQQRQVALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQ
ALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRS
PASSPQQLHHHHHHPLQITPPSSAASLKLSGMLTPSTPTSGTQMSQGTTT
PQPKTVASAAAARAAGEPSPEETTDLEELEQFAKTFKQRRIKLGFTQGDV
GLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQA
TGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPTS
EEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLDSPTGADDDESSYMM
HASFLDH

BO01576.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
nub-PE 601 CG34395-PE 1..601 1..601 3073 100 Plus
nub-PD 601 CG34395-PD 1..601 1..601 3073 100 Plus
nub-PB 961 CG34395-PB 394..961 34..601 2847 98.2 Plus
pdm2-PA 498 CG12287-PA 6..460 119..590 879 46.4 Plus
pdm2-PD 893 CG12287-PD 535..855 253..590 878 59.2 Plus