Clone Sequence Records
BO01576.3prime Sequence
964 bp (805 high quality bases) assembled on 2005-11-30
> BO01576.3prime
ATGGTCTAGAAAGCTTGCGTGCATCATATAGGAGGACTCGTCGTCATCGG
CGCCCGTGGGACTGTCCAGGGAGGGATTGATGCGCTTCTCCTTCTGCCGA
CGGTTGCAGAACCACACGCGCACCACCTCCTTCTCCATGCTCAGACGATC
GGCCAGCTGAGTGATCTCCTCTGAGGTGGGCTTCTGGTTGGCCAGAAAGG
CCTTCTCCAGAGCACCGCGAATGGTGGTCTCGATGGAGGTGCGCTTCTTG
CGACGGCGACCAATGATCTCCGGTGTGCTGACGGTGGCCTGCAAGGCGGC
AGGATCGAAGACACCACCGGTGGCCTGGATGGTGCGATCGGCGTCATCCA
ACCACTTCTGGAGCAGCGGCTTCAGCTTGCACATGTTCTTGAAGCTCAGA
TTGAGGGCCTCGAAACGTGAAATGGTGGTCTGCGAGAAGTCATTGCCATA
CAGTTTGCCCATGGCCAGACCCACATCGCCCTGGGTGAAGCCCAGCTTGA
TTCGCCGCTGCTTGAAGGTCTTGGCAAACTGCTCCAACTCTTCTAGATCG
GTGGTTTCCTCCGGCGATGGCTCGCCCGCTGCCCGAGCAGCTGCAGCACT
GGCCACCGTCTTGGGCTGCGGCGTGGTGGTGCCCTGGCTCATCTGGGTGC
CACTGGTGGGCGTACTGGGCGTCAGCATACCACTCAATTTCAAACTGGCC
GCCGAGCTGGGCGGCGTGATTTGCAGTGGATGGTGGTGGTGATGGTGCAA
CTGCTGGGGTGAGCTGGCCGGACTGCGAATTGCGATGGGGCTGCGGATCG
AGTGCGGTGTGGAACTGCGTGGCTGTTGCGTCATCTTGTGGGTCAGCTGC
AGTGGCTCATCCACCTGGCGCTGCTGTTGCTTCTGCAGTGCCTGGCATTG
CTGACTGGNCTGACTGAGGGGCTGCAGTTGGCTCTGCATTAGGAACTGGG
CTGCCGCCACCTGG
BO01576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6246-PA | 1806 | nub-RA | 858..1803 | 964..19 | 4611 | 99.4 | Minus |
CG12287-PB | 2682 | pdm2-RB | 2071..2246 | 531..356 | 755 | 97.1 | Minus |
CG12287-PA | 1497 | pdm2-RA | 886..1061 | 531..356 | 755 | 97.1 | Minus |
CG10037-PA | 1284 | vvl-RA | 796..843 | 399..352 | 215 | 97.9 | Minus |
CG10037-PA | 1284 | vvl-RA | 1028..1085 | 137..80 | 215 | 94.8 | Minus |
CG12287-PB | 2682 | pdm2-RB | 2472..2546 | 139..65 | 175 | 89.3 | Minus |
CG12287-PA | 1497 | pdm2-RA | 1309..1361 | 117..65 | 165 | 92.4 | Minus |
CG10037-PA | 1284 | vvl-RA | 679..731 | 516..464 | 165 | 92.4 | Minus |
CG12287-PB | 2682 | pdm2-RB | 2359..2387 | 252..224 | 145 | 100 | Minus |
CG12287-PA | 1497 | pdm2-RA | 1174..1202 | 252..224 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nub-RE | 2829 | CG34395-RE | 1071..2016 | 964..19 | 4659 | 99.5 | Minus |
nub-RD | 3267 | CG34395-RD | 1509..2454 | 964..19 | 4659 | 99.5 | Minus |
nub-RB | 4497 | CG34395-RB | 2739..3684 | 964..19 | 4659 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12626137..12627082 | 964..19 | 4659 | 99.5 | Minus |
2L | 23513712 | 2L | 12685177..12685398 | 568..347 | 900 | 93.7 | Minus |
3L | 28110227 | 3L | 6791492..6791673 | 528..347 | 505 | 85.2 | Minus |
2L | 23513712 | 2L | 12685502..12685689 | 252..65 | 445 | 82.4 | Minus |
3L | 28110227 | 3L | 6791853..6791910 | 137..80 | 245 | 94.8 | Minus |
Blast to na_te.dros performed 2015-02-12 16:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6903 | 936..778 | 135 | 61.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2372 | 892..815 | 113 | 62 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1145 | 903..846 | 110 | 65.5 | Minus |
BO01576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:27 Download gff for
BO01576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-PA | 858..1806 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:02 Download gff for
BO01576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6246-PA | 858..1806 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:45 Download gff for
BO01576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RB | 2739..3688 | 14..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:28 Download gff for
BO01576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RB | 2739..3688 | 14..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:28 Download gff for
BO01576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12626137..12627086 | 14..964 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:45 Download gff for
BO01576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12626137..12627086 | 14..964 | 99 | | Minus |
BO01576.5prime Sequence
900 bp (699 high quality bases) assembled on 2005-11-30
> BO01576.5prime
GAAGTTATCAGTCGACATGGTTATGTCGGAGCTACGTTGGCACACCGCTA
GTCCCGAGGATAATAAGAATTCCTTGAAGCGCGATTTGCTCAAATCCACA
CCAACCAGTGCCCGCGAGGCCGCCGTTCACATAATGCAGAATCGATATAT
CAGTCGCCTGTCGCGTTCGCCATCGCCACTTCAATCGAATGCTTCCGATT
GCGATGATAACAACTCGAGTGTGGGCACCTCGAGCGATCGCTGCCGATCT
CCTTTGAGTCCTGCGCTCTCCTTGAGCCACCAGCAGGCCAAACGCCAGCT
GATGTCGCTGCAGCCCCACCCGGCACACCATCATCACAATCCGCACCATT
TGAACCACCTGAACCACCATCAGTACAAACAGGAGGAGGATTACGATGAC
GCCAATGGTGGGGCATTGAATTTAACCAGCGACAATAGTCGCCACAGCAC
TCAGTCTCCATCGAATTCGGTGAAATCGGCCACAGCATCGCCGGTTCCGG
TAATTTCAGTGCCCTCGCCAGTGCCGCCCATGATCTCTCCGGTTTTGGCT
CCCTCGGGTTGTGGCTCCACCACACCCAATTCCATGGCAGCAGCGGCTGC
AGCCGCCGCCGCTGTGGCATCCACCATGGGTAGTGGCATCTCGCCGTTGC
TGGCCCTGCCGGGAATGTCCTCGCCACAGGCTCAACTCGCAGCAGCTGGC
TTGGGCATGAACAATCCACTGCTGACTGGATCACTGTCGCCACAGGATTT
TGCCCAGTTCCATCAGCTATTGCAGCAACGTCAAGTTGCGTTGACACAGC
AGTTCAACAGCTACATGGAGCTGCTGCGAAGTGGTTCCCTGGGGCTGGCA
CANGACGATCCGGCACTGACCGCCCAGGTGGCGGCAGCCCAGTTCCTAAT
BO01576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6246-PA | 1806 | nub-RA | 1..884 | 17..900 | 4376 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nub-RE | 2829 | CG34395-RE | 214..1097 | 17..900 | 4394 | 99.8 | Plus |
nub-RD | 3267 | CG34395-RD | 652..1535 | 17..900 | 4394 | 99.8 | Plus |
nub-RB | 4497 | CG34395-RB | 2012..2765 | 147..900 | 3744 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12625454..12626163 | 191..900 | 3524 | 99.7 | Plus |
2L | 23513712 | 2L | 12618996..12619125 | 17..146 | 650 | 100 | Plus |
2L | 23513712 | 2L | 12622975..12623019 | 147..191 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:02:19 has no hits.
BO01576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:28 Download gff for
BO01576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:03 Download gff for
BO01576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6246-PA | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:27 Download gff for
BO01576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RD | 646..1535 | 11..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:51:39 Download gff for
BO01576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RD | 646..1535 | 11..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:39 Download gff for
BO01576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12618990..12619125 | 11..146 | 97 | -> | Plus |
2L | 12622975..12623019 | 147..191 | 100 | -> | Plus |
2L | 12625455..12626163 | 192..900 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:27 Download gff for
BO01576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12618990..12619125 | 11..146 | 97 | -> | Plus |
arm_2L | 12622975..12623019 | 147..191 | 100 | -> | Plus |
arm_2L | 12625455..12626163 | 192..900 | 99 | | Plus |
BO01576.complete Sequence
1837 bp (1837 high quality bases) assembled on 2006-04-03
GenBank Submission: FJ629539
> BO01576.complete
GAAGTTATCAGTCGACATGGTTATGTCGGAGCTACGTTGGCACACCGCTA
GTCCCGAGGATAATAAGAATTCCTTGAAGCGCGATTTGCTCAAATCCACA
CCAACCAGTGCCCGCGAGGCCGCCGTTCACATAATGCAGAATCGATATAT
CAGTCGCCTGTCGCGTTCGCCATCGCCACTTCAATCGAATGCTTCCGATT
GCGATGATAACAACTCGAGTGTGGGCACCTCGAGCGATCGCTGCCGATCT
CCTTTGAGTCCTGCGCTCTCCTTGAGCCACCAGCAGGCCAAACGCCAGCT
GATGTCGCTGCAGCCCCACCCGGCACACCATCATCACAATCCGCACCATT
TGAACCACCTGAACCACCATCAGTACAAACAGGAGGAGGATTACGATGAC
GCCAATGGTGGGGCATTGAATTTAACCAGCGACAATAGTCGCCACAGCAC
TCAGTCTCCATCGAATTCGGTGAAATCGGCCACAGCATCGCCGGTTCCGG
TAATTTCAGTGCCCTCGCCAGTGCCGCCCATGATCTCTCCGGTTTTGGCT
CCCTCGGGTTGTGGCTCCACCACACCCAATTCCATGGCAGCAGCGGCTGC
AGCCGCCGCCGCTGTGGCATCCACCATGGGTAGTGGCATCTCGCCGTTGC
TGGCCCTGCCGGGAATGTCCTCGCCACAGGCTCAACTCGCAGCAGCTGGC
TTGGGCATGAACAATCCACTGCTGACTGGATCACTGTCGCCACAGGATTT
TGCCCAGTTCCATCAGCTATTGCAGCAACGTCAAGTTGCGTTGACACAGC
AGTTCAACAGCTACATGGAGCTGCTGCGAAGTGGTTCCCTGGGCCTGGCA
CAGGACGATCCGGCACTGACCGCCCAGGTGGCGGCAGCCCAGTTCCTAAT
GCAGAGCCAACTGCAGGCCCTCAGTCAGGCCAGTCAGCAATTGCAGGCAC
TGCAGAAGCAACAGCAGCGCCAGGTGGATGAGCCACTGCAGCTGAACCAC
AAGATGACGCAACAGCCACGCAGTTCCACACCGCACTCGATCCGCAGCCC
CATCGCAATTCGCAGTCCGGCCAGCTCACCCCAGCAGTTGCACCATCACC
ACCACCATCCACTGCAAATCACGCCGCCCAGCTCGGCGGCCAGTTTGAAA
TTGAGTGGTATGCTGACGCCCAGTACGCCCACCAGTGGCACCCAGATGAG
CCAGGGCACCACCACGCCGCAGCCCAAGACGGTGGCCAGTGCTGCAGCTG
CTCGGGCAGCGGGCGAGCCATCGCCGGAGGAAACCACCGATCTAGAAGAG
TTGGAGCAGTTTGCCAAGACCTTCAAGCAGCGGCGAATCAAGCTGGGCTT
CACCCAGGGCGATGTGGGTCTGGCCATGGGCAAACTGTATGGCAATGACT
TCTCGCAGACCACCATTTCACGTTTCGAGGCCCTCAATCTGAGCTTCAAG
AACATGTGCAAGCTGAAGCCGCTGCTCCAGAAGTGGTTGGATGACGCCGA
TCGCACCATCCAGGCCACCGGTGGTGTCTTCGATCCTGCCGCCTTGCAGG
CCACCGTCAGCACACCGGAGATCATTGGTCGCCGTCGCAAGAAGCGCACC
TCCATCGAGACCACCATTCGCGGTGCTCTGGAGAAGGCCTTTCTGGCCAA
CCAGAAGCCCACCTCAGAGGAGATCACTCAGCTGGCCGATCGTCTGAGCA
TGGAGAAGGAGGTGGTGCGCGTGTGGTTCTGCAACCGTCGGCAGAAGGAG
AAGCGCATCAATCCCTCCCTGGACAGTCCCACGGGCGCCGATGACGACGA
GTCCTCCTATATGATGCACGCAAGCTTTCTAGACCAT
BO01576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nub-RE | 1806 | CG34395-PE | 1..1803 | 17..1819 | 9015 | 100 | Plus |
nub-RD | 1806 | CG34395-PD | 1..1803 | 17..1819 | 9015 | 100 | Plus |
nub-RB | 2886 | CG34395-PB | 1211..2883 | 147..1819 | 8365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nub-RE | 2829 | CG34395-RE | 214..2016 | 17..1819 | 9015 | 100 | Plus |
nub-RD | 3267 | CG34395-RD | 652..2454 | 17..1819 | 9015 | 100 | Plus |
nub-RB | 4497 | CG34395-RB | 2012..3684 | 147..1819 | 8365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12625454..12627082 | 191..1819 | 8145 | 100 | Plus |
2L | 23513712 | 2L | 12685177..12685398 | 1270..1491 | 900 | 93.7 | Plus |
2L | 23513712 | 2L | 12618996..12619125 | 17..146 | 650 | 100 | Plus |
3L | 28110227 | 3L | 6791492..6791673 | 1310..1491 | 505 | 85.2 | Plus |
2L | 23513712 | 2L | 12685502..12685689 | 1586..1773 | 445 | 82.4 | Plus |
3L | 28110227 | 3L | 6791853..6791910 | 1701..1758 | 245 | 94.8 | Plus |
2L | 23513712 | 2L | 12622975..12623019 | 147..191 | 225 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2537 | 898..1142 | 172 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6903 | 902..1060 | 134 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1088..1153 | 935..1002 | 128 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2294..2372 | 946..1023 | 122 | 63.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1178 | 889..1007 | 119 | 59.3 | Plus |
BO01576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:56 Download gff for
BO01576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RD | 1..1806 | 17..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:04 Download gff for
BO01576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RD | 643..2455 | 11..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:40 Download gff for
BO01576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RD | 652..2454 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:57 Download gff for
BO01576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RD | 643..2455 | 11..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:09 Download gff for
BO01576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nub-RD | 652..2454 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:09 Download gff for
BO01576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12618996..12619125 | 17..146 | 100 | -> | Plus |
2L | 12622975..12623019 | 147..191 | 100 | -> | Plus |
2L | 12625455..12627082 | 192..1821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:40 Download gff for
BO01576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12618996..12619125 | 17..146 | 100 | -> | Plus |
arm_2L | 12622975..12623019 | 147..191 | 100 | -> | Plus |
arm_2L | 12625455..12627082 | 192..1821 | 99 | | Plus |
BO01576.pep Sequence
Translation from 16 to 1837
> BO01576.pep
MVMSELRWHTASPEDNKNSLKRDLLKSTPTSAREAAVHIMQNRYISRLSR
SPSPLQSNASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMSLQP
HPAHHHHNPHHLNHLNHHQYKQEEDYDDANGGALNLTSDNSRHSTQSPSN
SVKSATASPVPVISVPSPVPPMISPVLAPSGCGSTTPNSMAAAAAAAAAV
ASTMGSGISPLLALPGMSSPQAQLAAAGLGMNNPLLTGSLSPQDFAQFHQ
LLQQRQVALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQ
ALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRS
PASSPQQLHHHHHHPLQITPPSSAASLKLSGMLTPSTPTSGTQMSQGTTT
PQPKTVASAAAARAAGEPSPEETTDLEELEQFAKTFKQRRIKLGFTQGDV
GLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQA
TGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPTS
EEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLDSPTGADDDESSYMM
HASFLDH
BO01576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nub-PE | 601 | CG34395-PE | 1..601 | 1..601 | 3073 | 100 | Plus |
nub-PD | 601 | CG34395-PD | 1..601 | 1..601 | 3073 | 100 | Plus |
nub-PB | 961 | CG34395-PB | 394..961 | 34..601 | 2847 | 98.2 | Plus |
pdm2-PA | 498 | CG12287-PA | 6..460 | 119..590 | 879 | 46.4 | Plus |
pdm2-PD | 893 | CG12287-PD | 535..855 | 253..590 | 878 | 59.2 | Plus |