Clone Sequence Records
BO01577.3prime Sequence
894 bp (847 high quality bases) assembled on 2005-11-30
> BO01577.3prime
ATGGTCTAGAAAGCTTGCCCGAAATCCGCCGGTTAATGTGCGATCCGTGG
ACATGGTGGAGATCGTTTGTGCCTGTTGCTGCTGCGCCGACTGCTGCTGC
TGCGCCTGCGTCGCCGCCGCCTGGGCACCAGTCATGGTCGAGTTGATAAA
GATCGGCGTGCCACTGGCCACCGCACTGGCGTTGCTCTGCTGCGTGAGAT
TGGCGTGCTGCTGCTGTTGCTGCTGCTGCTGATGGGCCACTGTGGGTGCT
CCGCCCAGCTGGAGCAGTTGCTGTGTCGTCAGCAGTTGGGTTGGTATGAT
GACCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCT
GCTGCTGTTGCATTTGTAGTCGCTGCAGGAGATTCAAATGACTGGCATTG
ATGGCGATCGGCACATTAGTCAGCTCCCCCGTGGGCGTAACCACTTGCTG
CAGCAGCTGAATCTGCTGCTGATGTTGCTGGTGCTGCTGTTGCTGCTGGG
CGAGATTCTGGAGCAGCGCCGTCTGTTGCTGGGCAGTCGTTTGCGGCGCT
GGCGTTGCGGTCAGCTGACCATTGGGACCGGCGGTCAGTATCAACTGCTG
GGTGGGTTGTTGGGTTGACAAAATGTTGATGGGTAGATGATTCTGCGCGG
GCTGCGGCTGCTGCACGAGCTGCGCCGCCTGCTGACTCGGCAGTGCGATA
AAGTATTGCAACTGTTGGCCACCAGCGCCCTGCTGAATAATCTGAACCTG
CTGTGGATGTGCCTGGTGATGTTGCTGCTGCTGTTGTTGCTGCTGCTGCT
GGGCGGCGTGCTGTTGCTGCTGTTGTTGTTGCTGCTGCAGTTGCGCTGAG
AAGATGTCCGAGTTGACAGTGCTGAAGCCGAGCACCCTCGCGGC
BO01577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3075-PA | 1806 | CG3075-RA | 936..1803 | 886..19 | 4340 | 100 | Minus |
CG3638-PC | 3606 | CG3638-RC | 2476..2507 | 840..809 | 160 | 100 | Minus |
CG3638-PD | 4215 | CG3638-RD | 2476..2507 | 840..809 | 160 | 100 | Minus |
CG32466-PA | 2841 | rn-RA | 2349..2375 | 838..812 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YC-RA | 2522 | CG3075-RA | 1129..1996 | 886..19 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6819156..6819633 | 409..886 | 2390 | 100 | Plus |
X | 23542271 | X | 6818704..6819098 | 19..413 | 1960 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:51 has no hits.
BO01577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:28 Download gff for
BO01577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3075-PA | 928..1806 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:05 Download gff for
BO01577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3075-PA | 928..1806 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:36 Download gff for
BO01577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YC-RA | 1121..2004 | 12..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:51 Download gff for
BO01577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YC-RA | 1121..2004 | 12..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:51 Download gff for
BO01577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6818696..6819093 | 12..408 | 99 | <- | Plus |
X | 6819156..6819641 | 409..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:36 Download gff for
BO01577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6712729..6713126 | 12..408 | 99 | <- | Plus |
arm_X | 6713189..6713674 | 409..894 | 99 | | Plus |
BO01577.5prime Sequence
774 bp (710 high quality bases) assembled on 2005-11-30
> BO01577.5prime
GAAGTTATCAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGG
CGCCAAACAGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACG
CCCATAAAGATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGC
GGCTATGCAGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCA
CCGTCTCCTCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAG
CAGACGGTTCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAA
TCCCAGCATGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGG
AGAAGACCACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCC
ACCATCGACAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGG
CCAGGTGGATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAA
TCATGAAGCTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTA
CTGTTTGCCAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGC
TTGGGTGCACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACA
TTGCCCAGGCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATT
GTGCCGCGCGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGG
CAGTACATCCAGTTCGAGCGAAAT
BO01577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3075-PA | 1806 | CG3075-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YC-RA | 2522 | CG3075-RA | 193..951 | 16..774 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6819811..6820528 | 774..57 | 3575 | 99.9 | Minus |
X | 23542271 | X | 6820683..6820727 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:02:54 has no hits.
BO01577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:29 Download gff for
BO01577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3075-PA | 1..758 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:06 Download gff for
BO01577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3075-PA | 1..758 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:21 Download gff for
BO01577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YC-RA | 193..951 | 16..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:16 Download gff for
BO01577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YC-RA | 193..951 | 16..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:16 Download gff for
BO01577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6819811..6820524 | 61..774 | 99 | <- | Minus |
X | 6820683..6820727 | 16..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:21 Download gff for
BO01577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6713844..6714557 | 61..774 | 99 | <- | Minus |
arm_X | 6714716..6714760 | 16..60 | 100 | | Minus |
BO01577.complete Sequence
1837 bp (1837 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629540
> BO01577.complete
GAAGTTATCAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGG
CGCCAAACAGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACG
CCCATAAAGATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGC
GGCTATGCAGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCA
CCGTCTCCTCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAG
CAGACGGTTCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAA
TCCCAGCATGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGG
AGAAGACCACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCC
ACCATCGACAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGG
CCAGGTGGATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAA
TCATGAAGCTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTA
CTGTTTGCCAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGC
TTGGGTGCACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACA
TTGCCCAGGCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATT
GTGCCGCGCGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGG
CAGTACATCCAGTTCGAGCGGAATGGCGGGCGCAGCCAGCAGTGCCGCCT
CCACCTCCAACACAGCCACCTCCAATGCGGCCGCCTCCGTGGCGGGCAAT
GCTACCGCCACGGGCAACTTTGTAGCCAGTGGTTCCACCGTACCTGCGAC
CACCGCTGGTGGCCTCAAGCTGGACACCACGGGTGCAACCAATGCCGCCG
AGGTGCTCGGCTTCAGCACTGTCAACTCGGACATCTTCTCAGCGCAACTG
CAGCAGCAACAACAACAGCAGCAACAGCACGCCGCCCAGCAGCAGCAGCA
ACAACAGCAGCAGCAACATCACCAGGCACATCCACAGCAGGTTCAGATTA
TTCAGCAGGGCGCTGGTGGCCAACAGTTGCAATACTTTATCGCACTGCCG
AGTCAGCAGGCGGCGCAGCTCGTGCAGCAGCCGCAGCCCGCGCAGAATCA
TCTACCCATCAACATTTTGTCAACCCAACAACCCACCCAGCAGTTGATAC
TGACCGCCGGTCCCAATGGTCAGCTGACCGCAACGCCAGCGCCGCAAACG
ACTGCCCAGCAACAGACGGCGCTGCTCCAGAATCTCGCCCAGCAGCAACA
GCAGCACCAGCAACATCAGCAGCAGATTCAGCTGCTGCAGCAAGTGGTTA
CGCCCACGGGGGAGCTGACTAATGTGCCGATCGCCATCAATGCCAGTCAT
TTGAATCTCCTGCAGCGACTACAAATGCAACAGCAGCAGCAGCAGCAACA
ACAGCAGCAGCAACAGCAGCAGCAGCAACAACAGGTCATCATACCAACCC
AACTGCTGACGACACAGCAACTGCTCCAGCTGGGCGGAGCACCCACAGTG
GCCCATCAGCAGCAGCAGCAACAGCAGCAGCACGCCAATCTCACGCAGCA
GAGCAACGCCAGTGCGGTGGCCAGTGGCACGCCGATCTTTATCAACTCGA
CCATGACTGGTGCCCAGGCGGCGGCGACGCAGGCGCAGCAGCAGCAGTCG
GCGCAGCAGCAACAGGCACAAACGATCTCCACCATGTCCACGGATCGCAC
ATTAACCGGCGGATTTCGGGCAAGCTTTCTAGACCAT
BO01577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YC-RA | 1806 | CG3075-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YC-RA | 2522 | CG3075-RA | 193..1996 | 16..1819 | 9020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6819156..6820528 | 1429..57 | 6865 | 100 | Minus |
X | 23542271 | X | 6818704..6819098 | 1819..1425 | 1960 | 99.7 | Minus |
X | 23542271 | X | 6820683..6820727 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:08 has no hits.
BO01577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:32 Download gff for
BO01577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3075-RA | 1..1806 | 17..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:45 Download gff for
BO01577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3075-RA | 189..2000 | 16..1826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:28 Download gff for
BO01577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YC-RA | 194..1996 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:33 Download gff for
BO01577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3075-RA | 189..2000 | 16..1826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:43 Download gff for
BO01577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nf-YC-RA | 194..1996 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:43 Download gff for
BO01577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6820683..6820726 | 17..60 | 100 | | Minus |
X | 6818702..6819093 | 1430..1821 | 99 | <- | Minus |
X | 6819156..6820524 | 61..1429 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:28 Download gff for
BO01577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6712735..6713126 | 1430..1821 | 99 | <- | Minus |
arm_X | 6713189..6714557 | 61..1429 | 100 | <- | Minus |
arm_X | 6714716..6714759 | 17..60 | 100 | | Minus |
BO01577.pep Sequence
Translation from 16 to 1837
> BO01577.pep
MYATNNGGTNKAPNSNATSMFDNTITVTPIKMELGQAYAKSQNSAAMQRR
TPNAVVVTSSSTVSSAQQQQQQQGQQQQQTVPMASLVSNACTLVNPSMSV
TVATTVASGAKEKTTKATRTQVARKPPPTIDNFWPNIVSEVHSIGQVDAK
HQVLPLARIKKIMKLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTE
ESRRRTLQRSDIAQAIANYDQFDFLIDIVPREEIKPSSAQKTKDGSTSSS
SGMAGAASSAASTSNTATSNAAASVAGNATATGNFVASGSTVPATTAGGL
KLDTTGATNAAEVLGFSTVNSDIFSAQLQQQQQQQQQHAAQQQQQQQQQQ
HHQAHPQQVQIIQQGAGGQQLQYFIALPSQQAAQLVQQPQPAQNHLPINI
LSTQQPTQQLILTAGPNGQLTATPAPQTTAQQQTALLQNLAQQQQQHQQH
QQQIQLLQQVVTPTGELTNVPIAINASHLNLLQRLQMQQQQQQQQQQQQQ
QQQQQQVIIPTQLLTTQQLLQLGGAPTVAHQQQQQQQQHANLTQQSNASA
VASGTPIFINSTMTGAQAAATQAQQQQSAQQQQAQTISTMSTDRTLTGGF
RASFLDH
BO01577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nf-YC-PA | 601 | CG3075-PA | 1..601 | 1..601 | 2994 | 100 | Plus |
ptip-PA | 2294 | CG32133-PA | 950..1224 | 327..589 | 293 | 35.4 | Plus |
Smr-PG | 3607 | CG4013-PG | 2..354 | 244..585 | 286 | 30.6 | Plus |
ptip-PA | 2294 | CG32133-PA | 777..1034 | 302..587 | 284 | 36.4 | Plus |
ptip-PA | 2294 | CG32133-PA | 710..963 | 327..585 | 282 | 36.5 | Plus |
Smr-PG | 3607 | CG4013-PG | 28..664 | 3..592 | 280 | 24.9 | Plus |
Spt20-PC | 1646 | CG17689-PC | 812..1122 | 305..599 | 279 | 34.5 | Plus |
Spt20-PD | 1873 | CG17689-PD | 812..1122 | 305..599 | 279 | 34.5 | Plus |
ptip-PA | 2294 | CG32133-PA | 1012..1251 | 318..586 | 266 | 36.1 | Plus |
ptip-PA | 2294 | CG32133-PA | 936..1204 | 328..583 | 265 | 34.4 | Plus |
ptip-PA | 2294 | CG32133-PA | 229..485 | 327..583 | 263 | 35.6 | Plus |
ptip-PA | 2294 | CG32133-PA | 874..1186 | 327..598 | 256 | 33.4 | Plus |
ptip-PA | 2294 | CG32133-PA | 563..848 | 327..591 | 246 | 32.9 | Plus |
ptip-PA | 2294 | CG32133-PA | 262..578 | 300..587 | 238 | 31.8 | Plus |
ptip-PA | 2294 | CG32133-PA | 659..900 | 332..589 | 230 | 33.2 | Plus |
ptip-PA | 2294 | CG32133-PA | 1139..1366 | 319..537 | 212 | 35.8 | Plus |
ptip-PA | 2294 | CG32133-PA | 362..673 | 323..585 | 206 | 31.9 | Plus |
ptip-PA | 2294 | CG32133-PA | 429..757 | 327..607 | 206 | 28.7 | Plus |
ptip-PA | 2294 | CG32133-PA | 1481..1727 | 327..583 | 200 | 34.3 | Plus |
ptip-PA | 2294 | CG32133-PA | 1085..1349 | 312..583 | 192 | 31.6 | Plus |
Smr-PG | 3607 | CG4013-PG | 197..668 | 36..517 | 186 | 21.6 | Plus |
Spt20-PC | 1646 | CG17689-PC | 781..989 | 371..587 | 186 | 30.4 | Plus |
ptip-PA | 2294 | CG32133-PA | 189..307 | 436..587 | 180 | 37 | Plus |