Clone BO01577 Report

Search the DGRC for BO01577

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptNf-YC-RA
Protein status:BO01577.pep: validated full length
Sequenced Size:1837

Clone Sequence Records

BO01577.3prime Sequence

894 bp (847 high quality bases) assembled on 2005-11-30

> BO01577.3prime
ATGGTCTAGAAAGCTTGCCCGAAATCCGCCGGTTAATGTGCGATCCGTGG
ACATGGTGGAGATCGTTTGTGCCTGTTGCTGCTGCGCCGACTGCTGCTGC
TGCGCCTGCGTCGCCGCCGCCTGGGCACCAGTCATGGTCGAGTTGATAAA
GATCGGCGTGCCACTGGCCACCGCACTGGCGTTGCTCTGCTGCGTGAGAT
TGGCGTGCTGCTGCTGTTGCTGCTGCTGCTGATGGGCCACTGTGGGTGCT
CCGCCCAGCTGGAGCAGTTGCTGTGTCGTCAGCAGTTGGGTTGGTATGAT
GACCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCTGCT
GCTGCTGTTGCATTTGTAGTCGCTGCAGGAGATTCAAATGACTGGCATTG
ATGGCGATCGGCACATTAGTCAGCTCCCCCGTGGGCGTAACCACTTGCTG
CAGCAGCTGAATCTGCTGCTGATGTTGCTGGTGCTGCTGTTGCTGCTGGG
CGAGATTCTGGAGCAGCGCCGTCTGTTGCTGGGCAGTCGTTTGCGGCGCT
GGCGTTGCGGTCAGCTGACCATTGGGACCGGCGGTCAGTATCAACTGCTG
GGTGGGTTGTTGGGTTGACAAAATGTTGATGGGTAGATGATTCTGCGCGG
GCTGCGGCTGCTGCACGAGCTGCGCCGCCTGCTGACTCGGCAGTGCGATA
AAGTATTGCAACTGTTGGCCACCAGCGCCCTGCTGAATAATCTGAACCTG
CTGTGGATGTGCCTGGTGATGTTGCTGCTGCTGTTGTTGCTGCTGCTGCT
GGGCGGCGTGCTGTTGCTGCTGTTGTTGTTGCTGCTGCAGTTGCGCTGAG
AAGATGTCCGAGTTGACAGTGCTGAAGCCGAGCACCCTCGCGGC

BO01577.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3075-PA 1806 CG3075-RA 936..1803 886..19 4340 100 Minus
CG3638-PC 3606 CG3638-RC 2476..2507 840..809 160 100 Minus
CG3638-PD 4215 CG3638-RD 2476..2507 840..809 160 100 Minus
CG32466-PA 2841 rn-RA 2349..2375 838..812 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YC-RA 2522 CG3075-RA 1129..1996 886..19 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6819156..6819633 409..886 2390 100 Plus
X 23542271 X 6818704..6819098 19..413 1960 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 15:49:51 has no hits.

BO01577.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:28 Download gff for BO01577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3075-PA 928..1806 15..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:05 Download gff for BO01577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3075-PA 928..1806 15..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:36 Download gff for BO01577.3prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YC-RA 1121..2004 12..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:51 Download gff for BO01577.3prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YC-RA 1121..2004 12..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:51 Download gff for BO01577.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6818696..6819093 12..408 99 <- Plus
X 6819156..6819641 409..894 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:36 Download gff for BO01577.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6712729..6713126 12..408 99 <- Plus
arm_X 6713189..6713674 409..894 99   Plus

BO01577.5prime Sequence

774 bp (710 high quality bases) assembled on 2005-11-30

> BO01577.5prime
GAAGTTATCAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGG
CGCCAAACAGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACG
CCCATAAAGATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGC
GGCTATGCAGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCA
CCGTCTCCTCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAG
CAGACGGTTCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAA
TCCCAGCATGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGG
AGAAGACCACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCC
ACCATCGACAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGG
CCAGGTGGATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAA
TCATGAAGCTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTA
CTGTTTGCCAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGC
TTGGGTGCACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACA
TTGCCCAGGCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATT
GTGCCGCGCGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGG
CAGTACATCCAGTTCGAGCGAAAT

BO01577.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3075-PA 1806 CG3075-RA 1..754 17..770 3770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YC-RA 2522 CG3075-RA 193..951 16..774 3780 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6819811..6820528 774..57 3575 99.9 Minus
X 23542271 X 6820683..6820727 60..16 225 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:02:54 has no hits.

BO01577.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:29 Download gff for BO01577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3075-PA 1..758 17..774 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:06 Download gff for BO01577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3075-PA 1..758 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:21 Download gff for BO01577.5prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YC-RA 193..951 16..774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:16 Download gff for BO01577.5prime
Subject Subject Range Query Range Percent Splice Strand
Nf-YC-RA 193..951 16..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:16 Download gff for BO01577.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6819811..6820524 61..774 99 <- Minus
X 6820683..6820727 16..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:21 Download gff for BO01577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6713844..6714557 61..774 99 <- Minus
arm_X 6714716..6714760 16..60 100   Minus

BO01577.complete Sequence

1837 bp (1837 high quality bases) assembled on 2006-05-02

GenBank Submission: FJ629540

> BO01577.complete
GAAGTTATCAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGG
CGCCAAACAGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACG
CCCATAAAGATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGC
GGCTATGCAGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCA
CCGTCTCCTCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAG
CAGACGGTTCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAA
TCCCAGCATGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGG
AGAAGACCACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCC
ACCATCGACAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGG
CCAGGTGGATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAA
TCATGAAGCTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTA
CTGTTTGCCAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGC
TTGGGTGCACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACA
TTGCCCAGGCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATT
GTGCCGCGCGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGG
CAGTACATCCAGTTCGAGCGGAATGGCGGGCGCAGCCAGCAGTGCCGCCT
CCACCTCCAACACAGCCACCTCCAATGCGGCCGCCTCCGTGGCGGGCAAT
GCTACCGCCACGGGCAACTTTGTAGCCAGTGGTTCCACCGTACCTGCGAC
CACCGCTGGTGGCCTCAAGCTGGACACCACGGGTGCAACCAATGCCGCCG
AGGTGCTCGGCTTCAGCACTGTCAACTCGGACATCTTCTCAGCGCAACTG
CAGCAGCAACAACAACAGCAGCAACAGCACGCCGCCCAGCAGCAGCAGCA
ACAACAGCAGCAGCAACATCACCAGGCACATCCACAGCAGGTTCAGATTA
TTCAGCAGGGCGCTGGTGGCCAACAGTTGCAATACTTTATCGCACTGCCG
AGTCAGCAGGCGGCGCAGCTCGTGCAGCAGCCGCAGCCCGCGCAGAATCA
TCTACCCATCAACATTTTGTCAACCCAACAACCCACCCAGCAGTTGATAC
TGACCGCCGGTCCCAATGGTCAGCTGACCGCAACGCCAGCGCCGCAAACG
ACTGCCCAGCAACAGACGGCGCTGCTCCAGAATCTCGCCCAGCAGCAACA
GCAGCACCAGCAACATCAGCAGCAGATTCAGCTGCTGCAGCAAGTGGTTA
CGCCCACGGGGGAGCTGACTAATGTGCCGATCGCCATCAATGCCAGTCAT
TTGAATCTCCTGCAGCGACTACAAATGCAACAGCAGCAGCAGCAGCAACA
ACAGCAGCAGCAACAGCAGCAGCAGCAACAACAGGTCATCATACCAACCC
AACTGCTGACGACACAGCAACTGCTCCAGCTGGGCGGAGCACCCACAGTG
GCCCATCAGCAGCAGCAGCAACAGCAGCAGCACGCCAATCTCACGCAGCA
GAGCAACGCCAGTGCGGTGGCCAGTGGCACGCCGATCTTTATCAACTCGA
CCATGACTGGTGCCCAGGCGGCGGCGACGCAGGCGCAGCAGCAGCAGTCG
GCGCAGCAGCAACAGGCACAAACGATCTCCACCATGTCCACGGATCGCAC
ATTAACCGGCGGATTTCGGGCAAGCTTTCTAGACCAT

BO01577.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YC-RA 1806 CG3075-PA 1..1803 17..1819 9015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YC-RA 2522 CG3075-RA 193..1996 16..1819 9020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6819156..6820528 1429..57 6865 100 Minus
X 23542271 X 6818704..6819098 1819..1425 1960 99.7 Minus
X 23542271 X 6820683..6820727 60..16 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:44:08 has no hits.

BO01577.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:32 Download gff for BO01577.complete
Subject Subject Range Query Range Percent Splice Strand
CG3075-RA 1..1806 17..1823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:45 Download gff for BO01577.complete
Subject Subject Range Query Range Percent Splice Strand
CG3075-RA 189..2000 16..1826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:28 Download gff for BO01577.complete
Subject Subject Range Query Range Percent Splice Strand
Nf-YC-RA 194..1996 17..1821 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:33 Download gff for BO01577.complete
Subject Subject Range Query Range Percent Splice Strand
CG3075-RA 189..2000 16..1826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:43 Download gff for BO01577.complete
Subject Subject Range Query Range Percent Splice Strand
Nf-YC-RA 194..1996 17..1821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:43 Download gff for BO01577.complete
Subject Subject Range Query Range Percent Splice Strand
X 6820683..6820726 17..60 100   Minus
X 6818702..6819093 1430..1821 99 <- Minus
X 6819156..6820524 61..1429 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:28 Download gff for BO01577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6712735..6713126 1430..1821 99 <- Minus
arm_X 6713189..6714557 61..1429 100 <- Minus
arm_X 6714716..6714759 17..60 100   Minus

BO01577.pep Sequence

Translation from 16 to 1837

> BO01577.pep
MYATNNGGTNKAPNSNATSMFDNTITVTPIKMELGQAYAKSQNSAAMQRR
TPNAVVVTSSSTVSSAQQQQQQQGQQQQQTVPMASLVSNACTLVNPSMSV
TVATTVASGAKEKTTKATRTQVARKPPPTIDNFWPNIVSEVHSIGQVDAK
HQVLPLARIKKIMKLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTE
ESRRRTLQRSDIAQAIANYDQFDFLIDIVPREEIKPSSAQKTKDGSTSSS
SGMAGAASSAASTSNTATSNAAASVAGNATATGNFVASGSTVPATTAGGL
KLDTTGATNAAEVLGFSTVNSDIFSAQLQQQQQQQQQHAAQQQQQQQQQQ
HHQAHPQQVQIIQQGAGGQQLQYFIALPSQQAAQLVQQPQPAQNHLPINI
LSTQQPTQQLILTAGPNGQLTATPAPQTTAQQQTALLQNLAQQQQQHQQH
QQQIQLLQQVVTPTGELTNVPIAINASHLNLLQRLQMQQQQQQQQQQQQQ
QQQQQQVIIPTQLLTTQQLLQLGGAPTVAHQQQQQQQQHANLTQQSNASA
VASGTPIFINSTMTGAQAAATQAQQQQSAQQQQAQTISTMSTDRTLTGGF
RASFLDH

BO01577.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Nf-YC-PA 601 CG3075-PA 1..601 1..601 2994 100 Plus
ptip-PA 2294 CG32133-PA 950..1224 327..589 293 35.4 Plus
Smr-PG 3607 CG4013-PG 2..354 244..585 286 30.6 Plus
ptip-PA 2294 CG32133-PA 777..1034 302..587 284 36.4 Plus
ptip-PA 2294 CG32133-PA 710..963 327..585 282 36.5 Plus
Smr-PG 3607 CG4013-PG 28..664 3..592 280 24.9 Plus
Spt20-PC 1646 CG17689-PC 812..1122 305..599 279 34.5 Plus
Spt20-PD 1873 CG17689-PD 812..1122 305..599 279 34.5 Plus
ptip-PA 2294 CG32133-PA 1012..1251 318..586 266 36.1 Plus
ptip-PA 2294 CG32133-PA 936..1204 328..583 265 34.4 Plus
ptip-PA 2294 CG32133-PA 229..485 327..583 263 35.6 Plus
ptip-PA 2294 CG32133-PA 874..1186 327..598 256 33.4 Plus
ptip-PA 2294 CG32133-PA 563..848 327..591 246 32.9 Plus
ptip-PA 2294 CG32133-PA 262..578 300..587 238 31.8 Plus
ptip-PA 2294 CG32133-PA 659..900 332..589 230 33.2 Plus
ptip-PA 2294 CG32133-PA 1139..1366 319..537 212 35.8 Plus
ptip-PA 2294 CG32133-PA 362..673 323..585 206 31.9 Plus
ptip-PA 2294 CG32133-PA 429..757 327..607 206 28.7 Plus
ptip-PA 2294 CG32133-PA 1481..1727 327..583 200 34.3 Plus
ptip-PA 2294 CG32133-PA 1085..1349 312..583 192 31.6 Plus
Smr-PG 3607 CG4013-PG 197..668 36..517 186 21.6 Plus
Spt20-PC 1646 CG17689-PC 781..989 371..587 186 30.4 Plus
ptip-PA 2294 CG32133-PA 189..307 436..587 180 37 Plus