Clone Sequence Records
BO01579.3prime Sequence
877 bp (812 high quality bases) assembled on 2005-11-30
> BO01579.3prime
ATGGTCTAGAAAGCTTGCTTGCGTCGAGGAGCGGGCACGTTTCGGGTTCG
AGTACAGCGAAATTAGCATGGACGGGTCTGGCTGGCTCGTGTCCAAACGC
CTCCTGCGCTGCGGCGGCAGGCGTTCCGTAAAACGTTTCGGTATACCGGC
TTCCAGTAGCGTTTTTCGGTCGTACAAATCAAGATTGTCGTTATAGTATG
TGATGGCGTCCCAGCACATTTCGCTCAGTTTGGGCACTGTCATCCACATC
TTATACAGATCGTTGCGGCGGCGCATCTCCTTGTCAATGTACTCGATGCC
TCCGAATACGTACATGCATCCATTATCGGAGTGGGCCGCCGAGTGGAAGT
AAAGGGGGCGGGGCAGGATGGCGGTCTCGATGCGATACCAATGCTTAGTG
CGCAGATTAAGCTTCCAGATGTCCGAAAAATATGTGGAGAAGTCGCCTTG
CAGACCGCCCGTGATGAAAGCCTCGATGTCCCCAGTGGAGGACTGGTGCT
GCACACAGGAAAAGCACTTGCGCGGCTTTGGATAGCCTCTGTTGCCGTCG
TCCGCATCAGCTGCACGCTGATCGGGATACGTTTCAAAGTAATCCCAGCA
GTTCGCCTCCAGGTTGTAAGCCGGAATGCGCTGCAAATCGTATACAGAGT
GCGATGTGCCGCCGCCCAGCACAAAGATGTGCTTGCCATCATAAACGACC
TCGTGACGGTAGCGCCCTTCTGGGTCGTCTCGCATCTCCGGACGACTTAT
GTACACATTCTCCCATATACCGGTGCGCAAATCCAAAACGATAAACATCA
CAAGTGTAATCAAATCCCGTCGTTCCGCCGATTGTGTAGAGGAAGTGCTT
GTGGATCACTATTTCCGGTCCGTACTG
BO01579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5186-PB | 1884 | slim-RB | 1113..1881 | 787..19 | 3845 | 100 | Minus |
CG5186-PA | 1830 | slim-RA | 1059..1827 | 787..19 | 3845 | 100 | Minus |
CG5186-PB | 1884 | slim-RB | 1024..1115 | 877..786 | 435 | 98.9 | Minus |
CG5186-PA | 1830 | slim-RA | 970..1061 | 877..786 | 435 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slim-RC | 2510 | CG5186-RC | 1479..2336 | 877..19 | 4255 | 99.8 | Minus |
slim-RA | 3081 | CG5186-RA | 1479..2336 | 877..19 | 4255 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18444348..18444781 | 452..19 | 2155 | 99.8 | Minus |
2R | 25286936 | 2R | 18443784..18444213 | 877..447 | 2090 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:53:57 has no hits.
BO01579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:30 Download gff for
BO01579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-PA | 970..1830 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:08 Download gff for
BO01579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5186-PA | 970..1830 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:51 Download gff for
BO01579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 1479..2341 | 13..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:48 Download gff for
BO01579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 1479..2341 | 13..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:48 Download gff for
BO01579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18443784..18444212 | 448..877 | 99 | -> | Minus |
2R | 18444353..18444786 | 13..447 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:51 Download gff for
BO01579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14331289..14331717 | 448..877 | 99 | -> | Minus |
arm_2R | 14331858..14332291 | 13..447 | 99 | | Minus |
BO01579.5prime Sequence
684 bp (488 high quality bases) assembled on 2005-11-30
> BO01579.5prime
GAAGTTATCAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTA
TCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGC
GACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGA
GCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATCA
TGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTG
CCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGC
TGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGG
AAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCG
GAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGA
TGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGNATGTCTTCC
TCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTAC
GCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATAT
ACCCGGTGGATTTCCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTC
CATTTCGCATCTGTATTCCCTGGGTGGGCTACAA
BO01579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5186-PB | 1884 | slim-RB | 55..650 | 17..612 | 2961 | 99.8 | Plus |
CG5186-PA | 1830 | slim-RA | 1..596 | 17..612 | 2961 | 99.8 | Plus |
CG5186-PB | 1884 | slim-RB | 651..713 | 615..677 | 290 | 98.4 | Plus |
CG5186-PA | 1830 | slim-RA | 597..659 | 615..677 | 290 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slim-RC | 2510 | CG5186-RC | 510..1174 | 17..684 | 3249 | 99.3 | Plus |
slim-RA | 3081 | CG5186-RA | 510..1174 | 17..684 | 3249 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18441474..18442132 | 17..677 | 3214 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-13 00:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 161..189 | 118 | 89.7 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 161..189 | 118 | 89.7 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2873..2928 | 166..219 | 112 | 71.4 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 2767..2822 | 166..219 | 112 | 71.4 | Plus |
BO01579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:31 Download gff for
BO01579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-PA | 1..663 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:09 Download gff for
BO01579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5186-PA | 1..663 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:25 Download gff for
BO01579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 504..1172 | 10..682 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:59 Download gff for
BO01579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 504..1172 | 10..682 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:59 Download gff for
BO01579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18441468..18442136 | 10..682 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:25 Download gff for
BO01579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14328973..14329641 | 10..682 | 98 | | Plus |
BO01579.complete Sequence
1861 bp (1861 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629541
> BO01579.complete
GAAGTTATCAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTA
TCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGC
GACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGA
GCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATCA
TGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTG
CCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGC
TGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGG
AAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCG
GAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGA
TGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCC
TCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTAC
GCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATAT
ACCCGGTGGATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCCA
ATTCGCATCTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTCT
GCATCACGCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACAA
CTTTGCCACGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCCA
ATATGCCCGTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAACGTG
TTGATTTCTCATGGCGGCACTGGTTATCCATTTGGAGTATCCTGCTCCAA
CGACTGTTACGTTTACCGAACGGCCAGCGCTGGCGCGACACCGGGCGTGG
ATCGCCTCCAGGTTAAGGGTGACCTGCCCACGGCTCAGTACGGACCGGGA
ATAGTGATCCACAAGCACTTCCTCTACACAATCGGCGGAACGACGGGATT
TGATTACACTTGTGATGTTTATCGTTTGGATTTGCGCACCGGTATATGGG
AGAATGTGTACATAAGTCGTCCGGAGATGCGAGACGACCCAGAAGGGCGC
TACCGTCACGAGGTCGTTTATGATGGCAAGCACATCTTTGTGCTGGGCGG
CGGCACATCGCACTCTGTATACGATTTGCAGCGCATTCCGGCTTACAACC
TGGAGGCGAACTGCTGGGATTACTTTGAAACGTATCCCGATCAGCGTGCA
GCTGATGCGGACGACGGCAACAGAGGCTATCCAAAGCCGCGCAAGTGCTT
TTCCTGTGTGCAGCACCAGTCCTCCACTGGGGACATCGAGGCTTTCATCA
CGGGCGGTCTGCAAGGCGACTTCTCCACATATTTTTCGGACATCTGGAAG
CTTAATCTGCGCACTAAGCATTGGTATCGCATCGAGACCGCCATCCTGCC
CCGCCCCCTTTACTTCCACTCGGCGGCCCACTCCGATAATGGATGCATGT
ACGTATTCGGAGGCATCGAGTACATTGACAAGGAGATGCGCCGCCGCAAC
GATCTGTATAAGATGTGGATGACAGTGCCCAAACTGAGCGAAATGTGCTG
GGACGCCATCACATACTATAACGACAATCTTGATTTGTACGACCGAAAAA
CGCTACTGGAAGCCGGTATACCGAAACGTTTTACGGAACGCCTGCCGCCG
CAGCGCAGGAGGCGTTTGGACACGAGCCAGCCAGACCCGTCCATGCTAAT
TTCGCTGTACTCGAACCCGAAACGTGCCCGCTCCTCGACGCAAGCAAGCT
TTCTAGACCAT
BO01579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slim-RC | 1830 | CG5186-PC | 1..1827 | 17..1843 | 9135 | 100 | Plus |
slim-RA | 1830 | CG5186-PA | 1..1827 | 17..1843 | 9135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slim-RC | 2510 | CG5186-RC | 510..2336 | 17..1843 | 9135 | 100 | Plus |
slim-RA | 3081 | CG5186-RA | 510..2336 | 17..1843 | 9135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18441474..18442313 | 17..856 | 4200 | 100 | Plus |
2R | 25286936 | 2R | 18443655..18444213 | 857..1415 | 2795 | 100 | Plus |
2R | 25286936 | 2R | 18444348..18444781 | 1410..1843 | 2155 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 16:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 161..189 | 118 | 89.7 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 161..189 | 118 | 89.7 | Plus |
BO01579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:34 Download gff for
BO01579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 1..1830 | 17..1844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:47 Download gff for
BO01579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 512..2349 | 10..1849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:20 Download gff for
BO01579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 510..2336 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:34 Download gff for
BO01579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 512..2349 | 10..1849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:29 Download gff for
BO01579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slim-RA | 510..2336 | 17..1845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:29 Download gff for
BO01579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18441474..18442313 | 17..856 | 100 | -> | Plus |
2R | 18443655..18444212 | 857..1414 | 100 | -> | Plus |
2R | 18444353..18444781 | 1415..1845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:20 Download gff for
BO01579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14328979..14329818 | 17..856 | 100 | -> | Plus |
arm_2R | 14331160..14331717 | 857..1414 | 100 | -> | Plus |
arm_2R | 14331858..14332286 | 1415..1845 | 99 | | Plus |
BO01579.pep Sequence
Translation from 16 to 1861
> BO01579.pep
MNILNPGKFKCIVFDQLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANH
NNNNNNNNDLIMEQDMPEEEVGQPEEALPQQDNGEVVDRFNAIQAAVELM
DAASDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEG
TELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFP
LARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNFATRT
WRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY
RTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCD
VYRLDLRTGIWENVYISRPEMRDDPEGRYRHEVVYDGKHIFVLGGGTSHS
VYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFSCVQH
QSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETAILPRPLYF
HSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAITY
YNDNLDLYDRKTLLEAGIPKRFTERLPPQRRRRLDTSQPDPSMLISLYSN
PKRARSSTQASFLDH
BO01579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slim-PC | 609 | CG5186-PC | 1..609 | 1..609 | 3295 | 100 | Plus |
slim-PA | 609 | CG5186-PA | 1..609 | 1..609 | 3295 | 100 | Plus |