Clone BO01579 Report

Search the DGRC for BO01579

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:15
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptslim-RA
Protein status:BO01579.pep: validated full length
Sequenced Size:1861

Clone Sequence Records

BO01579.3prime Sequence

877 bp (812 high quality bases) assembled on 2005-11-30

> BO01579.3prime
ATGGTCTAGAAAGCTTGCTTGCGTCGAGGAGCGGGCACGTTTCGGGTTCG
AGTACAGCGAAATTAGCATGGACGGGTCTGGCTGGCTCGTGTCCAAACGC
CTCCTGCGCTGCGGCGGCAGGCGTTCCGTAAAACGTTTCGGTATACCGGC
TTCCAGTAGCGTTTTTCGGTCGTACAAATCAAGATTGTCGTTATAGTATG
TGATGGCGTCCCAGCACATTTCGCTCAGTTTGGGCACTGTCATCCACATC
TTATACAGATCGTTGCGGCGGCGCATCTCCTTGTCAATGTACTCGATGCC
TCCGAATACGTACATGCATCCATTATCGGAGTGGGCCGCCGAGTGGAAGT
AAAGGGGGCGGGGCAGGATGGCGGTCTCGATGCGATACCAATGCTTAGTG
CGCAGATTAAGCTTCCAGATGTCCGAAAAATATGTGGAGAAGTCGCCTTG
CAGACCGCCCGTGATGAAAGCCTCGATGTCCCCAGTGGAGGACTGGTGCT
GCACACAGGAAAAGCACTTGCGCGGCTTTGGATAGCCTCTGTTGCCGTCG
TCCGCATCAGCTGCACGCTGATCGGGATACGTTTCAAAGTAATCCCAGCA
GTTCGCCTCCAGGTTGTAAGCCGGAATGCGCTGCAAATCGTATACAGAGT
GCGATGTGCCGCCGCCCAGCACAAAGATGTGCTTGCCATCATAAACGACC
TCGTGACGGTAGCGCCCTTCTGGGTCGTCTCGCATCTCCGGACGACTTAT
GTACACATTCTCCCATATACCGGTGCGCAAATCCAAAACGATAAACATCA
CAAGTGTAATCAAATCCCGTCGTTCCGCCGATTGTGTAGAGGAAGTGCTT
GTGGATCACTATTTCCGGTCCGTACTG

BO01579.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5186-PB 1884 slim-RB 1113..1881 787..19 3845 100 Minus
CG5186-PA 1830 slim-RA 1059..1827 787..19 3845 100 Minus
CG5186-PB 1884 slim-RB 1024..1115 877..786 435 98.9 Minus
CG5186-PA 1830 slim-RA 970..1061 877..786 435 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 2510 CG5186-RC 1479..2336 877..19 4255 99.8 Minus
slim-RA 3081 CG5186-RA 1479..2336 877..19 4255 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18444348..18444781 452..19 2155 99.8 Minus
2R 25286936 2R 18443784..18444213 877..447 2090 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 05:53:57 has no hits.

BO01579.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:30 Download gff for BO01579.3prime
Subject Subject Range Query Range Percent Splice Strand
slim-PA 970..1830 18..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:08 Download gff for BO01579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5186-PA 970..1830 18..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:51 Download gff for BO01579.3prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1479..2341 13..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:46:48 Download gff for BO01579.3prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1479..2341 13..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:46:48 Download gff for BO01579.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18443784..18444212 448..877 99 -> Minus
2R 18444353..18444786 13..447 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:51 Download gff for BO01579.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14331289..14331717 448..877 99 -> Minus
arm_2R 14331858..14332291 13..447 99   Minus

BO01579.5prime Sequence

684 bp (488 high quality bases) assembled on 2005-11-30

> BO01579.5prime
GAAGTTATCAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTA
TCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGC
GACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGA
GCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATCA
TGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTG
CCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGC
TGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGG
AAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCG
GAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGA
TGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGNATGTCTTCC
TCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTAC
GCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATAT
ACCCGGTGGATTTCCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTC
CATTTCGCATCTGTATTCCCTGGGTGGGCTACAA

BO01579.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5186-PB 1884 slim-RB 55..650 17..612 2961 99.8 Plus
CG5186-PA 1830 slim-RA 1..596 17..612 2961 99.8 Plus
CG5186-PB 1884 slim-RB 651..713 615..677 290 98.4 Plus
CG5186-PA 1830 slim-RA 597..659 615..677 290 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 2510 CG5186-RC 510..1174 17..684 3249 99.3 Plus
slim-RA 3081 CG5186-RA 510..1174 17..684 3249 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18441474..18442132 17..677 3214 99.4 Plus
Blast to na_te.dros performed 2015-02-13 00:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..50 161..189 118 89.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7088 161..189 118 89.7 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 2873..2928 166..219 112 71.4 Plus
Stalker 7256 Stalker STALKER 7256bp 2767..2822 166..219 112 71.4 Plus

BO01579.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:31 Download gff for BO01579.5prime
Subject Subject Range Query Range Percent Splice Strand
slim-PA 1..663 17..682 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:09 Download gff for BO01579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5186-PA 1..663 17..682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:25 Download gff for BO01579.5prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 504..1172 10..682 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:59 Download gff for BO01579.5prime
Subject Subject Range Query Range Percent Splice Strand
slim-RA 504..1172 10..682 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:59 Download gff for BO01579.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18441468..18442136 10..682 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:25 Download gff for BO01579.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14328973..14329641 10..682 98   Plus

BO01579.complete Sequence

1861 bp (1861 high quality bases) assembled on 2006-05-02

GenBank Submission: FJ629541

> BO01579.complete
GAAGTTATCAGTCGACATGAACATACTAAATCCAGGCAAATTCAAGTGTA
TCGTATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGC
GACTTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGA
GCAGCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATCA
TGGAACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTG
CCGCAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGC
TGCCGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGG
AAGAAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCG
GAGTCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGA
TGAGCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCC
TCTCGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTAC
GCCTTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATAT
ACCCGGTGGATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCCA
ATTCGCATCTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTCT
GCATCACGCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACAA
CTTTGCCACGAGAACCTGGAGGCTGGAGCTGAATGCGGGCAATGCCGCCA
ATATGCCCGTGGAGCTGGCCTCCAATGCATTGACCATTCACAATAACGTG
TTGATTTCTCATGGCGGCACTGGTTATCCATTTGGAGTATCCTGCTCCAA
CGACTGTTACGTTTACCGAACGGCCAGCGCTGGCGCGACACCGGGCGTGG
ATCGCCTCCAGGTTAAGGGTGACCTGCCCACGGCTCAGTACGGACCGGGA
ATAGTGATCCACAAGCACTTCCTCTACACAATCGGCGGAACGACGGGATT
TGATTACACTTGTGATGTTTATCGTTTGGATTTGCGCACCGGTATATGGG
AGAATGTGTACATAAGTCGTCCGGAGATGCGAGACGACCCAGAAGGGCGC
TACCGTCACGAGGTCGTTTATGATGGCAAGCACATCTTTGTGCTGGGCGG
CGGCACATCGCACTCTGTATACGATTTGCAGCGCATTCCGGCTTACAACC
TGGAGGCGAACTGCTGGGATTACTTTGAAACGTATCCCGATCAGCGTGCA
GCTGATGCGGACGACGGCAACAGAGGCTATCCAAAGCCGCGCAAGTGCTT
TTCCTGTGTGCAGCACCAGTCCTCCACTGGGGACATCGAGGCTTTCATCA
CGGGCGGTCTGCAAGGCGACTTCTCCACATATTTTTCGGACATCTGGAAG
CTTAATCTGCGCACTAAGCATTGGTATCGCATCGAGACCGCCATCCTGCC
CCGCCCCCTTTACTTCCACTCGGCGGCCCACTCCGATAATGGATGCATGT
ACGTATTCGGAGGCATCGAGTACATTGACAAGGAGATGCGCCGCCGCAAC
GATCTGTATAAGATGTGGATGACAGTGCCCAAACTGAGCGAAATGTGCTG
GGACGCCATCACATACTATAACGACAATCTTGATTTGTACGACCGAAAAA
CGCTACTGGAAGCCGGTATACCGAAACGTTTTACGGAACGCCTGCCGCCG
CAGCGCAGGAGGCGTTTGGACACGAGCCAGCCAGACCCGTCCATGCTAAT
TTCGCTGTACTCGAACCCGAAACGTGCCCGCTCCTCGACGCAAGCAAGCT
TTCTAGACCAT

BO01579.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 1830 CG5186-PC 1..1827 17..1843 9135 100 Plus
slim-RA 1830 CG5186-PA 1..1827 17..1843 9135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
slim-RC 2510 CG5186-RC 510..2336 17..1843 9135 100 Plus
slim-RA 3081 CG5186-RA 510..2336 17..1843 9135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18441474..18442313 17..856 4200 100 Plus
2R 25286936 2R 18443655..18444213 857..1415 2795 100 Plus
2R 25286936 2R 18444348..18444781 1410..1843 2155 99.8 Plus
Blast to na_te.dros performed 2014-11-27 16:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..50 161..189 118 89.7 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7088 161..189 118 89.7 Plus

BO01579.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:34 Download gff for BO01579.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 1..1830 17..1844 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:47 Download gff for BO01579.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 512..2349 10..1849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:20 Download gff for BO01579.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 510..2336 17..1845 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:34 Download gff for BO01579.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 512..2349 10..1849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:29 Download gff for BO01579.complete
Subject Subject Range Query Range Percent Splice Strand
slim-RA 510..2336 17..1845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:29 Download gff for BO01579.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18441474..18442313 17..856 100 -> Plus
2R 18443655..18444212 857..1414 100 -> Plus
2R 18444353..18444781 1415..1845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:20 Download gff for BO01579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14328979..14329818 17..856 100 -> Plus
arm_2R 14331160..14331717 857..1414 100 -> Plus
arm_2R 14331858..14332286 1415..1845 99   Plus

BO01579.pep Sequence

Translation from 16 to 1861

> BO01579.pep
MNILNPGKFKCIVFDQLRHTWTFLLFICDFLAKIYRTPRITAHQEQLANH
NNNNNNNNDLIMEQDMPEEEVGQPEEALPQQDNGEVVDRFNAIQAAVELM
DAASDLDEEEEEEDDDVDVDVDYGDTDSESEFEEMYSDEWTSSSDELDEG
TELSKSVLNVFLSSDKQQSQMAGQIPMYAFQPLRLVKCQYRDKHIPGGFP
LARSGHRIIASNSHLYSLGGYNPRSAMSASRHGRCLLFQELWSYNFATRT
WRLELNAGNAANMPVELASNALTIHNNVLISHGGTGYPFGVSCSNDCYVY
RTASAGATPGVDRLQVKGDLPTAQYGPGIVIHKHFLYTIGGTTGFDYTCD
VYRLDLRTGIWENVYISRPEMRDDPEGRYRHEVVYDGKHIFVLGGGTSHS
VYDLQRIPAYNLEANCWDYFETYPDQRAADADDGNRGYPKPRKCFSCVQH
QSSTGDIEAFITGGLQGDFSTYFSDIWKLNLRTKHWYRIETAILPRPLYF
HSAAHSDNGCMYVFGGIEYIDKEMRRRNDLYKMWMTVPKLSEMCWDAITY
YNDNLDLYDRKTLLEAGIPKRFTERLPPQRRRRLDTSQPDPSMLISLYSN
PKRARSSTQASFLDH

BO01579.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
slim-PC 609 CG5186-PC 1..609 1..609 3295 100 Plus
slim-PA 609 CG5186-PA 1..609 1..609 3295 100 Plus