Clone Sequence Records
BO01583.3prime Sequence
802 bp (753 high quality bases) assembled on 2005-11-30
> BO01583.3prime
ATGGTCTAGAAAGCTTGCGTGACATCCAACGCAGTTCGGATTTCGCTCCT
CGAAATCACATATTCCGATAGCGAAACGAAAGGGTTTATGTTGAGGCAAG
TGCATGGGCTGCGTGGAGGGCATCGGTATTCGCGGAATATAGAACTCACG
TTCTTCGTACGACTTGACTATTCGAGAATAGTCCGATGACCGTGGCACAT
GGCAGTTGACAATCGAGAGCGAACGATCAATGCTGATGAGGGGCTCGTCG
TTGGGACTGTGCCCCAGCTTTTTGCAATGGGCCAGCAGCTTAGCCTCGCT
AAGAAACTCCAATCGGCAGAAATTGCAGTGGTAATTGATCCCTTTCCTGT
GCAGCTGGAAATGCCGATCTAACTGGTGCTGCAACTCAAACTCTTCGCGG
CACTTATGGCAGATGTAGAGGCCGCGGTTCTGGAGATGCATATGGTAGTC
TAAAAAGACCTTGCTGGTGAACACATCGCCGCACTTATGACAGTAAAACC
AGCTCATCTTCCAGTGCTCCATGTAGTCGTGCTTCATTAGAGCCACTAGG
GTGTCCGTCTGGTAGCCACAGTCAGGCGTGAAACAAGTGAATGATTTCAG
TCGCACCTGCGTCTTGAGCAGGTCCAGTAGGTAAAGATCATACTCCTTGT
CGGTGGTCATGTGCGTTTCCACCATTCCGTAGTCTCCGTACAAAAGGGAG
AGATTACCAGCGCTGTTGCTATTGCTGCGGCTGTGGTTAACAATCCAGTC
GCCAGTNAAGTTCATACGTCGCGCGTACATGGCATCCTCCTCGCCCTCTT
CT
BO01583.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11906-PA | 1905 | CG11906-RA | 1119..1902 | 802..19 | 3901 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11906-RA | 2289 | CG11906-RA | 1298..2081 | 802..19 | 3909 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19281626..19282071 | 19..464 | 2215 | 99.8 | Plus |
| 2R | 25286936 | 2R | 19282129..19282308 | 460..639 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 19282369..19282532 | 639..802 | 809 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:07:02 has no hits.
BO01583.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:34 Download gff for
BO01583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-PA | 1119..1905 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:14 Download gff for
BO01583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-PA | 1119..1905 | 16..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:27 Download gff for
BO01583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 1298..2081 | 19..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:35 Download gff for
BO01583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 1298..2081 | 19..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:35 Download gff for
BO01583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19281626..19282067 | 19..460 | 100 | <- | Plus |
| 2R | 19282130..19282307 | 461..638 | 100 | <- | Plus |
| 2R | 19282369..19282532 | 639..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:27 Download gff for
BO01583.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15169131..15169572 | 19..460 | 100 | <- | Plus |
| arm_2R | 15169635..15169812 | 461..638 | 100 | <- | Plus |
| arm_2R | 15169874..15170037 | 639..802 | 99 | | Plus |
BO01583.5prime Sequence
824 bp (452 high quality bases) assembled on 2005-11-30
> BO01583.5prime
GAAGTTATCAGTCGACATGCAGGATGCCACGGCTCCGGATCCGGAACCCA
GCAGCACCAACGGCAATTGCTCCGTTGAACATGACAATCGGCAGGATCAG
GATGAGAACCACGTAGGCGCCGAGCGGGAAGCGGAGGCCAACGATGCCAA
CTGCACCGTTTGTGGTGCCGCCAAGGCATCGGCGCTTTTGGATCTGCGCT
CCAACCATGTAATGCAACGTCGCCTAAGTCGCGACTGGAAGATTCATGCA
GATGTAATCCGATCCACATTGAAGGCCATTTGCGTGGAGTGCGTGTGCAA
GCTGAACATGCACTCGGAGGTCACTCGATCCCTGATGCAGCGCATGCAAC
GGCTGCAGCGTTCCGGTGGTGAAACCACCAAGGTGACAACCACCACGACA
TCGCCCAGCCAGCACAGTCCACCCATTGCTGATGCAGAGGTGTCGACCAC
CTTGACTGAGAGTCAGGAGGAGGTGGCCCACAGCGGGCTGAGCGTTCGCT
CGCGTTCTTCCTGCTCCGTGCTGGAAGTATACCTCGCTCAACAACCATAT
TCTCCATCGGCCAAGGAAACGGAAGAGAAGCATGCGGAGGGCTGGAAATG
GCGAACACGGCTGGAGTGTCACGAATGTGGTCGGGCCTATTTTCGACGGG
ATTACTACGCCCAGCACTTGAGGCGCTGCTCCAAAACGCGCAGGAAGCAG
CCACGTCCATCGCGCGTCAAATGCCGGGTACTAAATGAGGCGAGCTATGA
TGAAGAGGCGCCATCCAGAGCCATCCGATCATCGCGCATATACTACTGCC
GGCATTGCGACGCAGAGTTTGAGA
BO01583.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11906-PA | 1905 | CG11906-RA | 1..808 | 17..824 | 3990 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11906-RA | 2289 | CG11906-RA | 180..987 | 17..824 | 4010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19282903..19283483 | 824..244 | 2860 | 99.5 | Minus |
| 2R | 25286936 | 2R | 19283551..19283782 | 248..17 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:04:16 has no hits.
BO01583.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:35 Download gff for
BO01583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:15 Download gff for
BO01583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:50:27 Download gff for
BO01583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 173..986 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:15:30 Download gff for
BO01583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 173..986 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:15:30 Download gff for
BO01583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19283552..19283786 | 9..247 | 98 | | Minus |
| 2R | 19282904..19283479 | 248..823 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:50:27 Download gff for
BO01583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15170409..15170984 | 248..823 | 99 | <- | Minus |
| arm_2R | 15171057..15171291 | 9..247 | 98 | | Minus |
BO01583.complete Sequence
1936 bp assembled on 2007-03-23
GenBank Submission: FJ629542
> BO01583.complete
GAAGTTATCAGTCGACATGCAGGATGCCACGGCTCCGGATCCGGAACCCA
GCAGCACCAACGGCAATTGCTCCGTTGAACATGACAATCGGCAGGATCAG
GATGAGAACCACGTAGGCGCCGAGCGGGAAGCGGAGGCCAACGATGCCAA
CTGCACCGTTTGTGGTGCCGCCAAGGCATCGGCGCTTTTGGATCTGCGCT
CCAACCATGTAATGCAACGTCGCCTAAGTCGCGACTGGAAGATTCATGCA
GATGTAATCCGATCCACATTGAAGGCCATTTGCGTGGAGTGCGTGTGCAA
GCTGAACATGCACTCGGAGGTCACTCGATCCCTGATGCAGCGCATGCAAC
GGCTGCAGCGTTCCGGTGGTGAAACCACCAAGGTGACAACCACCACGACA
TCGCCCAGCCAGCACAGTCCACCCATTGCTGATGCAGAGGTGTCGACCAC
CTTGATTGAGAGTCAGGAGGAGGTGGCCCACAGCGGGCAGAGCGTTCGCT
CGCGTTCTTCCTGCTCCGTGCTGGAAGTATACCTCGCTCAACAACCATAT
TCTCCATCGGCCAAGGAAACGGAAGAGAAGCATGCGGAGGGCTGGAAATG
GCGAACACGGCTGGAGTGTCACGAATGTGGTCGGGCCTATTTTCGACGGG
ATTACTACGCCCAGCACTTGAGGCGCTGCTCCAAAACGCGCAGGAAGCAG
CCACGTCCATCGCGCGTCAAATGCCGGGTACTAAATGAGGCGAGCTATGA
TGAAGAGGCGCCATCCAGAGCCATCCGATCATCGCGCATATACTACTGCC
GGCATTGCGACGCAGAGTTTGAGACCTTAATCAGTAAGCGACAGCATGAG
CGAATGAAGCATCAGCAGCGATATCCGTGTGATTTGTGCGAAGCCCAGTT
GGACACGAAGTACGAGTGGGAAATGCATCACACCATCTGCCAGGCCAAGC
AGGAGGCCTTAGCAATTGTGGAGCAGCAGGAAGCTGGCCAAACCGTTATG
ACTTCCCGGGTGCCAAGGGCATGCTCGATGCGCTCTCGCTCACGGGCATG
CTCCGAAGCCTGGGATAGGTACGACATGGATGAGGAGGAAGAGGACGAAG
AAGATGAAGAGATAGAAAGCGGTGGGGAGGAACTAGAAGAGGGCGAGGAG
GATGCCATGTACGCGCGACGTATGAACTTTACTGGCGACTGGATTGTTAA
CCACAGCCGCAGCAATAGCAACAGCGCTGGTAATCTCTCCCTTTTGTACG
GAGACTACGGAATGGTGGAAACGCACATGACCACCGACAAGGAGTATGAT
CTTTACCTACTGGACCTGCTCAAGACGCAGGTGCGACTGAAATCATTCAC
TTGTTTCACGCCTGACTGTGGCTACCAGACGGACACCCTAGTGGCTCTAA
TGAAGCACGACTACATGGAGCACTGGAAGATGAGCTGGTTTTACTGTCAT
AAGTGCGGCGATGTGTTCACCAGCAAGGTCTTTTTAGACTACCATATGCA
TCTCCAGAACCGCGGCCTCTACATCTGCCATAAGTGCCGCGAAGAGTTTG
AGTTGCAGCACCAGTTAGATCGGCATTTCCAGCTGCACAGGAAAGGGATC
AATTACCACTGCAATTTCTGCCGATTGGAGTTTCTTAGCGAGGCTAAGCT
GCTGGCCCATTGCAAAAAGCTGGGGCACAGTCCCAACGACGAGCCCCTCA
TCAGCATTGATCGTTCGCTCTCGATTGTCAACTGCCATGTGCCACGGTCA
TCGGACTATTCTCGAATAGTCAAGTCGTACGAAGAACGTGAGTTCTATAT
TCCGCGAATACCGATGCCCTCCACGCAGCCCATGCACTTGCCTCAACATA
AACCCTTTCGTTTCGCTATCGGAATATGTGATTTCGAGGAGCGAAATCCG
AACTGCGTTGGATGTCACGCAAGCTTTCTAGACCAT
BO01583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11906-RA | 1905 | CG11906-PA | 1..1902 | 17..1918 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11906-RA | 2289 | CG11906-RA | 180..2081 | 17..1918 | 9510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19282771..19283483 | 956..244 | 3550 | 99.9 | Minus |
| 2R | 25286936 | 2R | 19281626..19282071 | 1918..1473 | 2215 | 99.8 | Minus |
| 2R | 25286936 | 2R | 19282369..19282713 | 1298..954 | 1725 | 100 | Minus |
| 2R | 25286936 | 2R | 19283551..19283782 | 248..17 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 19282129..19282308 | 1477..1298 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:43:24 has no hits.
BO01583.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:46 Download gff for
BO01583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 1..1905 | 17..1921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:02 Download gff for
BO01583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 183..2091 | 9..1918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:24 Download gff for
BO01583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 180..2081 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:46 Download gff for
BO01583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 183..2091 | 9..1918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:38 Download gff for
BO01583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11906-RA | 180..2081 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:38 Download gff for
BO01583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19281623..19282067 | 1477..1920 | 99 | <- | Minus |
| 2R | 19282130..19282307 | 1299..1476 | 100 | <- | Minus |
| 2R | 19282369..19282711 | 956..1298 | 100 | <- | Minus |
| 2R | 19282772..19283479 | 248..955 | 100 | <- | Minus |
| 2R | 19283552..19283782 | 17..247 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:24 Download gff for
BO01583.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15169874..15170216 | 956..1298 | 100 | <- | Minus |
| arm_2R | 15169128..15169572 | 1477..1920 | 99 | <- | Minus |
| arm_2R | 15169635..15169812 | 1299..1476 | 100 | <- | Minus |
| arm_2R | 15170277..15170984 | 248..955 | 100 | <- | Minus |
| arm_2R | 15171057..15171287 | 17..247 | 100 | | Minus |
BO01583.pep Sequence
Translation from 16 to 1936
> BO01583.pep
MQDATAPDPEPSSTNGNCSVEHDNRQDQDENHVGAEREAEANDANCTVCG
AAKASALLDLRSNHVMQRRLSRDWKIHADVIRSTLKAICVECVCKLNMHS
EVTRSLMQRMQRLQRSGGETTKVTTTTTSPSQHSPPIADAEVSTTLIESQ
EEVAHSGQSVRSRSSCSVLEVYLAQQPYSPSAKETEEKHAEGWKWRTRLE
CHECGRAYFRRDYYAQHLRRCSKTRRKQPRPSRVKCRVLNEASYDEEAPS
RAIRSSRIYYCRHCDAEFETLISKRQHERMKHQQRYPCDLCEAQLDTKYE
WEMHHTICQAKQEALAIVEQQEAGQTVMTSRVPRACSMRSRSRACSEAWD
RYDMDEEEEDEEDEEIESGGEELEEGEEDAMYARRMNFTGDWIVNHSRSN
SNSAGNLSLLYGDYGMVETHMTTDKEYDLYLLDLLKTQVRLKSFTCFTPD
CGYQTDTLVALMKHDYMEHWKMSWFYCHKCGDVFTSKVFLDYHMHLQNRG
LYICHKCREEFELQHQLDRHFQLHRKGINYHCNFCRLEFLSEAKLLAHCK
KLGHSPNDEPLISIDRSLSIVNCHVPRSSDYSRIVKSYEEREFYIPRIPM
PSTQPMHLPQHKPFRFAIGICDFEERNPNCVGCHASFLDH
BO01583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11906-PA | 634 | CG11906-PA | 1..634 | 1..634 | 3447 | 100 | Plus |
