Clone Sequence Records
BO01586.3prime Sequence
848 bp (754 high quality bases) assembled on 2005-11-30
> BO01586.3prime
ATGGTCTAGAAAGCTTGCCGAACATGCCACCTCCGTTGTGGTTGTGTTGC
TGCTGGCATTGCCATTGTTGTGAGGCTGTGTCGGTTCCTGCTCTACAACG
TCTATCTCGGAGCCGTTCTTGCCAGAGCTCTTAAAGCTTGGCGCACTTAA
TTGCGCCGTTGTGGGCGTGGTGGGCGTCCCTGCCCCCATATCGCTGGAGG
CATTCGAGTTCTCCTCTGTCAGCGAATCGCTGAGTCTTTGTATCTTGGCT
CCGCTATCCCGACCGCGATTTCCACTTGATGGCTGCTGGCCTGGGGGCAG
TGGATCCTGCGATTGGGCCAGTTCCGTAGAAAGTCGTTTGCGGTTAGCCA
ATAGCGTGTTATTAAAATTATTGTGACTTTCCATTGACTTGCGCTCACGC
TTTAGGAAGTCAGAGTCTAAATAAAGCGACAGCTGCTTGCGCTTTACATG
GCGGGCATCAATGGTCATGCCTTCCTTAAGCATTTTGATGTTAACGCCGT
GCATCATCACATGCTCTGTAAAGTTTTGTATGCTCTCGGTGAGGTCCACG
TTAAGGTTCTCCGATCGCTCGAATTCCAAGCCTATAAACCACATGGAGCA
GAAGGGTGCCGATGTCACAGCAGACTGGTTTCCCTGCGACTGCTTCAGAT
CGTCTTCATTTCCACTGTTGTTTTGTGAGTTGTTGGCACTTTGGCCCTTC
TTAAACTCAAAACACTTGGGATTGACATGGGCCAGTGCAATATGGGGATT
TCGCTCCAAGTTTGCAATTAGCAGACGCACCTTTGACTCAACAAGGCCGC
ACCACTCTAAATGATCGTCAGCCGTCTGCGAGTTGACTAAACACACGA
BO01586.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9854-PC | 1980 | hrg-RC | 1156..1977 | 840..19 | 4035 | 99.6 | Minus |
| CG9854-PA | 1980 | hrg-RA | 1156..1977 | 840..19 | 4035 | 99.6 | Minus |
| CG9854-PB | 1980 | hrg-RB | 1156..1977 | 840..19 | 4035 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 2026..2855 | 848..19 | 4075 | 99.4 | Minus |
| hrg-RB | 3607 | CG9854-RB | 1590..2419 | 848..19 | 4075 | 99.4 | Minus |
| hrg-RA | 3914 | CG9854-RA | 1897..2726 | 848..19 | 4075 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19666626..19666980 | 494..848 | 1715 | 98.9 | Plus |
| 2R | 25286936 | 2R | 19666295..19666567 | 223..495 | 1350 | 99.6 | Plus |
| 2R | 25286936 | 2R | 19666027..19666231 | 19..223 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:02:49 has no hits.
BO01586.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:38 Download gff for
BO01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-PB | 1149..1980 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:19 Download gff for
BO01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9854-PB | 1149..1980 | 16..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:30 Download gff for
BO01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 1898..2732 | 15..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:04 Download gff for
BO01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 1898..2732 | 15..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:04 Download gff for
BO01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19666021..19666230 | 15..222 | 99 | <- | Plus |
| 2R | 19666295..19666567 | 223..495 | 99 | <- | Plus |
| 2R | 19666628..19666979 | 496..847 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:30 Download gff for
BO01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15553526..15553735 | 15..222 | 99 | <- | Plus |
| arm_2R | 15553800..15554072 | 223..495 | 99 | <- | Plus |
| arm_2R | 15554133..15554484 | 496..847 | 98 | | Plus |
BO01586.5prime Sequence
850 bp (725 high quality bases) assembled on 2005-11-30
> BO01586.5prime
GAAGTTATCAGTCGACATGTGGAATTCCGAACCAACACATCGCCAGCACC
ATCAGCACAATGGAAATTCTACCTCGGGCGGACCGCCCGCCAAGCAATTG
GGCATGACCTCGGCTATCAGTCTGGCCGAGCCACGGCCTGAGGATCTCCA
GCGCACTGATGAGCTCCGCGGCTCACTGGAGCCGTACAACGTCTTTGAGA
GCCAGGACGAGCTAAATCACCGTATGGAGATCCTGGCCAAGCTCAACACA
CTGGTCAAGCAGTGGGTCAAGGAAATCTCTGTCAGCAAGAACATGCCAGA
GTCAGCCGCCGAGAAGCTTGGCGGCAAGATCTACACATTCGGCTCGTATC
GATTGGGTGTCCATCACAAGGGTGCCGATATAGATGCCTTATGTGTTGCT
CCGCGAAATATTGAGCGCACCGACTACTTTCAGAGCTTCTTTGAGGTGCT
CAAGAAGCAGCCAGAGGTAACCGAGTGCCGCTCGGTGGAAGAGGCCTTTG
TGCCCGTCATCAAAATGAACTTTGATGGCATCGAAATTGATTTGCTGTTT
GCCCGTCTGTCCCTAAAAGAAATTCCTGATGACTTTGATCTACGGGATGA
TAACTTACTGCGGAATCTGGATCACCGTTCGGTGCGCAGCCTCAACGGCT
GTCGTGTGACGGACGAGATCCTGGCCCTGGTGCCCAATATTGAAAATTTC
CGCCTGGCACTGCGCACTATCAAATTGTGGGCAAAGAAGCACGGAATCTA
CTCAAATTCATTGGGTTATTTCGGTGGTGTGACCTGGGCCATGTTAGTGG
CCAGAACCTGTCAGCTGTATCCCAACGCTGCGGCTGCCACACTGGTGCAC
BO01586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9854-PC | 1980 | hrg-RC | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG9854-PA | 1980 | hrg-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
| CG9854-PB | 1980 | hrg-RB | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 877..1712 | 15..850 | 4180 | 100 | Plus |
| hrg-RB | 3607 | CG9854-RB | 441..1276 | 15..850 | 4180 | 100 | Plus |
| hrg-RA | 3914 | CG9854-RA | 748..1583 | 15..850 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19667528..19668250 | 737..15 | 3615 | 100 | Minus |
| 2R | 25286936 | 2R | 19667352..19667464 | 850..738 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:43:55 has no hits.
BO01586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:38 Download gff for
BO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-PB | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:21 Download gff for
BO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9854-PB | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:28 Download gff for
BO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 739..1583 | 3..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:14 Download gff for
BO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 739..1583 | 3..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:14 Download gff for
BO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19667352..19667464 | 738..850 | 100 | <- | Minus |
| 2R | 19667528..19668259 | 3..737 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:28 Download gff for
BO01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15554857..15554969 | 738..850 | 100 | <- | Minus |
| arm_2R | 15555033..15555764 | 3..737 | 99 | | Minus |
BO01586.complete Sequence
2011 bp assembled on 2007-03-23
GenBank Submission: FJ629543
> BO01586.complete
GAAGTTATCAGTCGACATGTGGAATTCCGAACCAACACATCGCCAGCACC
ATCAGCACAATGGAAATTCTACCTCGGGCGGACCGCCCGCCAAGCAATTG
GGCATGACCTCGGCTATCAGTCTGGCCGAGCCACGGCCTGAGGATCTCCA
GCGCACTGATGAGCTCCGCGGCTCACTGGAGCCGTACAACGTCTTTGAGA
GCCAGGACGAGCTAAATCACCGTATGGAGATCCTGGCCAAGCTCAACACA
CTGGTCAAGCAGTGGGTCAAGGAAATCTCTGTCAGCAAGAACATGCCAGA
GTCAGCCGCCGAGAAGCTTGGCGGCAAGATCTACACATTCGGCTCGTATC
GATTGGGTGTCCATCACAAGGGTGCCGATATAGATGCCTTATGTGTTGCT
CCGCGAAATATTGAGCGCACCGACTACTTTCAGAGCTTCTTTGAGGTGCT
CAAGAAGCAGCCAGAGGTAACCGAGTGCCGCTCGGTGGAAGAGGCCTTTG
TGCCCGTCATCAAAATGAACTTTGATGGCATCGAAATTGATTTGCTGTTT
GCCCGTCTGTCCCTAAAAGAAATTCCTGATGACTTTGATCTACGGGATGA
TAACTTACTGCGGAATCTGGATCACCGTTCGGTGCGCAGCCTCAACGGCT
GTCGTGTGACGGACGAGATCCTGGCCCTGGTGCCCAATATTGAAAATTTC
CGCCTGGCACTGCGCACTATCAAATTGTGGGCAAAGAAGCACGGAATCTA
CTCAAATTCATTGGGTTATTTCGGTGGTGTGACCTGGGCCATGTTAGTGG
CCAGAACCTGTCAGCTGTATCCCAACGCTGCGGCTGCCACACTGGTGCAC
AAGTTTTTCTTGGTCTTTTCGCGCTGGAAGTGGCCTAACCCAGTGCTACT
CAAGCACCCGGACAACGTTAATCTAAGATTTCAAGTCTGGGATCCGCGTG
TCAATGCCTCGGATCGGTATCATCTGATGCCCATTATTACGCCCGCATAC
CCACAACAGAATTCCACATTTAATGTGTCCGAATCCACCAAGAAGGTCAT
ATTGACCGAGTTCAATCGCGGCATGAACATCACGGATGAAATCATGCTCG
GTCGCATTCCGTGGGAGCGTTTGTTTGAGGCACCTAGCTTTTTTTACAGA
TACCGCCACTTTATCGTGTTGTTAGTCAACTCGCAGACGGCTGACGATCA
TTTAGAGTGGTGCGGCCTTGTTGAGTCAAAGGTGCGTCTGCTAATTGGCA
ACTTGGAGCGAAATCCCCATATTGCACTGGCCCATGTCAATCCCAAGTGT
TTTGAGTTTAAGAAGGGCCAAAGTGCCAACAACTCACAAAACAACAGTGG
AAATGAAGACGATCTGAAGCAGTCGCAGGGAAACCAGTCTGCTGTGACAT
CGGCACCCTTCTGCTCCATGTGGTTTATAGGCTTGGAATTCGAGCGATCG
GAGAACCTTAACGTGGACCTCACCGAGAGCATACAAAACTTTACAGAGCA
TGTGATGATGCACGGCGTTAACATCAAAATGCTTAAGGAAGGCATGACCA
TTGATGCCCGCCATGTAAAGCGCAAGCAGCTGTCGCTTTATTTAGACTCT
GACTTCCTAAAGCGTGAGCGCAAGTCAATGGAAAGTCACAATAATTTTAA
TAACACGCTATTGGCTAACCGCAAACGACTTTCTACGGAACTGGCCCAAT
CGCAGGATCCACTGCCCCCAGGCCAGCAGCCATCAAGTGGAAATCGCGGT
CGGGATAGCGGAGCCAAGATACAAAGACTCAGCGATTCGCTGACAGAGGA
GAACTCGAATGCCTCCAGCGATATGGGGGCAGGGACGCCCACCACGCCCA
CAACGGCGCAATTAAGTGCGCCAAGCTTTAAGAGCTCTGGCAAGAACGGC
TCCGAGATAGACGTTGTAGAGCAGGAACCGACACAGCCTCACAACAATGG
CAATGCCAGCAGCAACACAACCACAACGGAGGTGGCATGTTCGGCAAGCT
TTCTAGACCAT
BO01586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 2484 | CG9854-PD | 1..1977 | 17..1993 | 9870 | 99.9 | Plus |
| hrg-RB | 1980 | CG9854-PB | 1..1977 | 17..1993 | 9870 | 99.9 | Plus |
| hrg-RA | 1980 | CG9854-PA | 1..1977 | 17..1993 | 9870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 877..2855 | 15..1993 | 9880 | 99.9 | Plus |
| hrg-RB | 3607 | CG9854-RB | 441..2419 | 15..1993 | 9880 | 99.9 | Plus |
| hrg-RA | 3914 | CG9854-RA | 748..2726 | 15..1993 | 9880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19667528..19668250 | 737..15 | 3615 | 100 | Minus |
| 2R | 25286936 | 2R | 19666626..19667209 | 1518..935 | 2920 | 100 | Minus |
| 2R | 25286936 | 2R | 19666295..19666567 | 1789..1517 | 1350 | 99.6 | Minus |
| 2R | 25286936 | 2R | 19666027..19666231 | 1993..1789 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 19667266..19667464 | 936..738 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:21 has no hits.
BO01586.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:22 Download gff for
BO01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 1..1980 | 17..1996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:34 Download gff for
BO01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 424..2417 | 3..1997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:01 Download gff for
BO01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 750..2726 | 17..1995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:23 Download gff for
BO01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 424..2417 | 3..1997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:13 Download gff for
BO01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 750..2726 | 17..1995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:13 Download gff for
BO01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19666023..19666230 | 1790..1995 | 99 | <- | Minus |
| 2R | 19666295..19666567 | 1517..1789 | 99 | <- | Minus |
| 2R | 19666628..19667209 | 935..1516 | 100 | <- | Minus |
| 2R | 19667268..19667464 | 738..934 | 100 | <- | Minus |
| 2R | 19667528..19668248 | 17..737 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:01 Download gff for
BO01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15553528..15553735 | 1790..1995 | 99 | <- | Minus |
| arm_2R | 15553800..15554072 | 1517..1789 | 99 | <- | Minus |
| arm_2R | 15554133..15554714 | 935..1516 | 100 | <- | Minus |
| arm_2R | 15554773..15554969 | 738..934 | 100 | <- | Minus |
| arm_2R | 15555033..15555753 | 17..737 | 100 | | Minus |
BO01586.pep Sequence
Translation from 16 to 2011
> BO01586.pep
MWNSEPTHRQHHQHNGNSTSGGPPAKQLGMTSAISLAEPRPEDLQRTDEL
RGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVKEISVSKNMPESAAEK
LGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVLKKQPE
VTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRN
LDHRSVRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLG
YFGGVTWAMLVARTCQLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDN
VNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFNVSESTKKVILTEFN
RGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCG
LVESKVRLLIGNLERNPHIALAHVNPKCFEFKKGQSANNSQNNSGNEDDL
KQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG
VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLA
NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKIQRLSDSLTEENSNAS
SDMGAGTPTTPTTAQLSAPSFKSSGKNGSEIDVVEQEPTQPHNNGNASSN
TTTTEVACSASFLDH
BO01586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-PD | 827 | CG9854-PD | 1..659 | 1..659 | 3464 | 100 | Plus |
| hrg-PB | 659 | CG9854-PB | 1..659 | 1..659 | 3464 | 100 | Plus |
| hrg-PA | 659 | CG9854-PA | 1..659 | 1..659 | 3464 | 100 | Plus |
| hrg-PC | 659 | CG9854-PC | 1..659 | 1..659 | 3464 | 100 | Plus |
