Clone Sequence Records
BO01588.3prime Sequence
821 bp (729 high quality bases) assembled on 2005-11-30
> BO01588.3prime
ATGGTCTAGAAAGCTTGCGTCGGCCCGGGCCTGAGCGTCCTCGCCTTCCA
TCAGCTCCCTCTTCAGACCAATGGGAACGAACTGCGGCGAGGATGGGTAG
TCCACGTGATCCTTGCCATTGGCGGACGCACTGCTGGCGTGCATAATCAC
GCCGGCACCAGCCTCGGTTGGCTGGGGCGAGTAGGGCGATGGTGGCCGCT
CCTTTCTAGCCAGCGAGAGATCCTCCACGTGCTCTTGCTCATGATCCTCC
TCATCGTCCGCATCTTCACGTTCGTCCTGGTCGCGTTCCCTCTTGATAAT
ATTTTGCTCGTGCTTCTCCATCTCCAAGTCCATGGCCTCCTGCTCGTGCG
GGTAGTGACGACCTTGCGGACTTGGCGACCGCATGCCATGGCCATTGGAG
CGCTGGTCCATCTCCGCTGGACTGCTGGAAAGGCGATTGGCAGCGGCATG
GGCCGCTGCGGCCAGAGCCATGGCATGGAGAGCCTCTCGGCCGGCCATGT
CACCACCACGGTTCTCCAGAGCCTGCTGAAGGAAAGCGTGATCCAGAAGG
GCCGCAGCTGAGGGTGGAATGGTGGGCGGCATGCCGTGATGGGCGGGCAC
ATGGTCCACCTTCTGATCACGCTTCACCTCCGAGTGATGGCCATGTCCAT
GACCGTAGTTGTGTGCAGCAGCGGCTGCCGCAGCGGAATAGGAGAAACCT
TGTGAGGACTCAGCTCCCGGCGGGCTGCGCTTGGGTGTGCGGTGTGTGCC
ACGTCCTGTGGTGATGTTCAGCTTACGGACTTTGTCGTAGAGAGTGCGAC
TGGGCAGGCCGTACTTCCTGC
BO01588.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7230-PA | 1986 | rib-RA | 1181..1983 | 821..19 | 4015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-RC | 3956 | CG7230-RC | 1869..2671 | 821..19 | 4015 | 100 | Minus |
| rib-RB | 4244 | CG7230-RB | 2157..2959 | 821..19 | 4015 | 100 | Minus |
| rib-RA | 3956 | CG7230-RA | 1869..2671 | 821..19 | 4015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19279309..19280111 | 821..19 | 4015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:03:10 has no hits.
BO01588.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:39 Download gff for
BO01588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-PA | 1181..1986 | 16..821 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:22 Download gff for
BO01588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7230-PA | 1181..1986 | 16..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:31 Download gff for
BO01588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 1869..2671 | 19..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:04 Download gff for
BO01588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 1869..2671 | 19..821 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:04 Download gff for
BO01588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19279309..19280111 | 19..821 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:31 Download gff for
BO01588.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15166814..15167616 | 19..821 | 100 | | Minus |
BO01588.5prime Sequence
557 bp (458 high quality bases) assembled on 2005-11-30
> BO01588.5prime
GAAGTTATCAGTCGACATGGGCGGCCCAACGGCGCCGGTAGCCAGCAGTG
GCGAGGTGGGACAGACGTACTGCCTCCGCTGGAACAACCACCAGACCAAT
CTGGTACAGATTCTACACGCCCTGCACGAGGTGGGCAGCTATGTGGACTG
CAGCCTGGTGGTGGACGATGAACAGTTCCAGGCCCATCGCGTGGTTCTGG
CGGCCAATTCACCGTATTTCCAGCACATCCTGAAGGATGTGCCGCAGGAC
CACTGCAGCATCATACTGCCGGGAGTGAAGGGCTTCGAGATTGCCGCTTT
GCTGCAGTACATGTACACGGGCGAGACGACGGTGACCAAGAGCCAGGAGC
CGGAGATTCTGCGCACAGCCAAGGAGCTTCAGGTCAAGGGTCTGTACGAC
AACTTGATGAAGTTCAATCATGCCAGCGTCACGCCCACCTCCAGTTCGGG
AGCTGGCGGAACCAAGCCCCAGAACGGATCAGCATCCAACCACTCCTCAT
CCGTGATCTCCACATCCACGCACATCTCGCCCAGTGCCGCCATCTCGAGC
AGCTGCT
BO01588.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7230-PA | 1986 | rib-RA | 1..541 | 17..557 | 2680 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-RC | 3956 | CG7230-RC | 689..1229 | 17..557 | 2690 | 99.8 | Plus |
| rib-RB | 4244 | CG7230-RB | 977..1517 | 17..557 | 2690 | 99.8 | Plus |
| rib-RA | 3956 | CG7230-RA | 689..1229 | 17..557 | 2690 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19278129..19278669 | 17..557 | 2690 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:24:59 has no hits.
BO01588.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:41 Download gff for
BO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-PA | 1..541 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:23 Download gff for
BO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7230-PA | 1..541 | 17..557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 05:01:41 Download gff for
BO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 678..1229 | 4..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:11:26 Download gff for
BO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 678..1229 | 4..557 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:11:26 Download gff for
BO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19278118..19278669 | 4..557 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 05:01:41 Download gff for
BO01588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15165623..15166174 | 4..557 | 98 | | Plus |
BO01588.complete Sequence
2017 bp assembled on 2007-10-05
GenBank Submission: FJ638621
> BO01588.complete
GAAGTTATCAGTCGACATGGGCGGCCCAACGGCGCCGGTAGCCAGCAGTG
GCGAGGTGGGACAGACGTACTGCCTCCGCTGGAACAACCACCAGACCAAT
CTGGTACAGATTCTACACGCCCTGCACGAGGTGGGCAGCTATGTGGACTG
CAGCCTGGTGGTGGACGATGAACAGTTCCAGGCCCATCGCGTGGTTCTGG
CGGCCAATTCACCGTATTTCCAGCACATCCTGAAGGATGTGCCGCAGGAC
CACTGCAGCATCATACTGCCGGGAGTGAAGGGCTTCGAGATTGCCGCTTT
GCTGCAGTACATGTACACGGGCGAGACGACGGTGACCAAGAGCCAGGAGC
CGGAGATTCTGCGCACAGCCAAGGAGCTTCAGGTCAAGGGTCTGTACGAC
AACTTGATGAAGTTCAATCATGCCAGCGTCACGCCCACCTCCAGTTCGGG
AGCTGGCGGAGCCAAGCCCCAGAACGGATCAGCATCCAACCACTCCTCAT
CCGTGATCTCCACATCCACGCACATCTCGCCCAGTGCCGCCATCTCGAGC
AGCTGCTCGCCACCACCGCCGCCGCAGTTTGGCTATCAGCCGGGCTACAG
CCATTATCCTCAGCAGCAGCCGATGTCGGCTAGTCAGATTCCGGCCGGTG
AGGCTCCACTGACCCCCACCCAGGCCACACCCCACTCGGCGGCCTCGGGA
GCGGGAGAAGCCGGTGGACAGTGGCCACTGACACCCTCCGCCGCCGCCGC
CATGTTGAACTCTGTCTACGAATCAGCCGCCGATATGAATCCTCTCAAGC
GCAAGAAGCTGTCGGCCATTTCAAGCATGCTTCTGAGTGGAAACCGCGAC
ACACCCATCCTGAGAAACGTTCTGGCCCAAGCTAATCCCGCTGACTCCTC
GCAACCCGGACCAATGAATGCCAATGGAGAGAAGACGCCCACTCATCCCC
ACCAGAACACCCAGCTTCCTGCCGGATTGGGAGTAAGTGGAGGCGAGCGC
AACCACAGCTTCAATGGCTCCGACTACGGCGGCGACAAGGAACCACTTTC
GCCCTACACAGATCGTTCCTTTGAAGAGGAGACCGGTCAGTCTGGCGGCA
AGAAGCCGGAATGGAAGCGATACAAGCAGTATACCAGAGCGGATATGATG
TGCGCCATCCAAGCGGTGAGGGAGGGAATGAGTGCCCTGCAGGCGAGCAG
GAAGTACGGCCTGCCCAGTCGCACTCTCTACGACAAAGTCCGTAAGCTGA
ACATCACCACAGGACGTGGCACACACCGCACACCCAAGCGCAGCCCGCCG
GGAGCTGAGTCCTCACAAGGTTTCTCCTATTCCGCTGCGGCAGCCGCTGC
TGCACACAACTACGGTCATGGACATGGCCATCACTCGGAGGTGAAGCGTG
ATCAGAAGGTGGACCATGTGCCCGCCCATCACGGCATGCCGCCCACCATT
CCACCCTCAGCTGCGGCCCTTCTGGATCACGCTTTCCTTCAGCAGGCTCT
GGAGAACCGTGGTGGTGACATGGCCGGCCGAGAGGCTCTCCATGCCATGG
CTCTGGCCGCAGCGGCCCATGCCGCTGCCAATCGCCTTTCCAGCAGTCCA
GCGGAGATGGACCAGCGCTCCAATGGCCATGGCATGCGGTCGCCAAGTCC
GCAAGGTCGTCACTACCCGCACGAGCAGGAGGCCATGGACTTGGAGATGG
AGAAGCACGAGCAAAATATTATCAAGAGGGAACGCGACCAGGACGAACGT
GAAGATGCGGACGATGAGGAGGATCATGAGCAAGAGCACGTGGAGGATCT
CTCGCTGGCTAGAAAGGAGCGGCCACCATCGCCCTACTCGCCCCAGCCAA
CCGAGGCTGGTGCCGGCGTGATTATGCACGCCAGCAGTGCGTCCGCCAAT
GGCAAGGATCACGTGGACTACCCATCCTCGCCGCAGTTCGTTCCCATTGG
TCTGAAGAGGGAGCTGATGGAAGGCGAGGACGCTCAGGCCCGGGCCGACG
CAAGCTTTCTAGACCAT
BO01588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-RC | 2043 | CG7230-PC | 1..1983 | 17..1999 | 9915 | 100 | Plus |
| rib-RB | 1986 | CG7230-PB | 1..1983 | 17..1999 | 9915 | 100 | Plus |
| rib-RA | 1986 | CG7230-PA | 1..1983 | 17..1999 | 9915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-RC | 3956 | CG7230-RC | 689..2671 | 17..1999 | 9915 | 100 | Plus |
| rib-RB | 4244 | CG7230-RB | 977..2959 | 17..1999 | 9915 | 100 | Plus |
| rib-RA | 3956 | CG7230-RA | 689..2671 | 17..1999 | 9915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19278129..19280111 | 17..1999 | 9915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:55 has no hits.
BO01588.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:31 Download gff for
BO01588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 1..1986 | 17..2002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:55 Download gff for
BO01588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 684..2677 | 4..1999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:44 Download gff for
BO01588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 689..2671 | 17..2001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:31 Download gff for
BO01588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 684..2677 | 4..1999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:54 Download gff for
BO01588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rib-RA | 689..2671 | 17..2001 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:54 Download gff for
BO01588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19278129..19280111 | 17..2001 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:44 Download gff for
BO01588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15165634..15167616 | 17..2001 | 99 | | Plus |
BO01588.pep Sequence
Translation from 16 to 2017
> BO01588.pep
MGGPTAPVASSGEVGQTYCLRWNNHQTNLVQILHALHEVGSYVDCSLVVD
DEQFQAHRVVLAANSPYFQHILKDVPQDHCSIILPGVKGFEIAALLQYMY
TGETTVTKSQEPEILRTAKELQVKGLYDNLMKFNHASVTPTSSSGAGGAK
PQNGSASNHSSSVISTSTHISPSAAISSSCSPPPPPQFGYQPGYSHYPQQ
QPMSASQIPAGEAPLTPTQATPHSAASGAGEAGGQWPLTPSAAAAMLNSV
YESAADMNPLKRKKLSAISSMLLSGNRDTPILRNVLAQANPADSSQPGPM
NANGEKTPTHPHQNTQLPAGLGVSGGERNHSFNGSDYGGDKEPLSPYTDR
SFEEETGQSGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLP
SRTLYDKVRKLNITTGRGTHRTPKRSPPGAESSQGFSYSAAAAAAAHNYG
HGHGHHSEVKRDQKVDHVPAHHGMPPTIPPSAAALLDHAFLQQALENRGG
DMAGREALHAMALAAAAHAAANRLSSSPAEMDQRSNGHGMRSPSPQGRHY
PHEQEAMDLEMEKHEQNIIKRERDQDEREDADDEEDHEQEHVEDLSLARK
ERPPSPYSPQPTEAGAGVIMHASSASANGKDHVDYPSSPQFVPIGLKREL
MEGEDAQARADASFLDH
BO01588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rib-PC | 680 | CG7230-PC | 1..661 | 1..661 | 3484 | 100 | Plus |
| rib-PB | 661 | CG7230-PB | 1..661 | 1..661 | 3484 | 100 | Plus |
| rib-PA | 661 | CG7230-PA | 1..661 | 1..661 | 3484 | 100 | Plus |
| ab-PE | 899 | CG43860-PE | 76..367 | 16..303 | 289 | 29.3 | Plus |
| ab-PA | 904 | CG43860-PA | 76..367 | 16..303 | 289 | 29.3 | Plus |
