Clone Sequence Records
BO01589.3prime Sequence
921 bp (723 high quality bases) assembled on 2005-11-30
> BO01589.3prime
ATGGTCTAGAAAGCTTGCGTCGGGCGTGGGGCACACGGAGCTGTTGCTGC
CGAAATCGAAGCCCTCGGTATCGGGTATCTCAATCAGCGACTTGGCAATG
CCACCGAGTGGCGGCAGCATGTGCCCGGCTAGATTAGTCGGAGCTGCCGC
TGGAGGAGCAGGCTGGTTAGGATGATTGGGATGAGCAAGTGGAGCCGCTG
TGGAGGTAATGCTACTGCTGGGCTGCGAGTACTTTCTCACCCAGTCGTTG
GGATGCATCTTCTTCTTGTGGTTGTGCATGTTGGCATGAGACTTGAAGGT
GCGCGTACAAAACTGGCATTGGTACAGATCGATGCCCGTGTGAGTGGCCA
TGTGCTCGGCCAATGCCCGCGGCAGCTTGAACTCCTTGTCGCAGAGACTG
CACTTGTGCCGCTTGGCGGAGTGATGGTACCGCATGTGGCTGCTGAGTGC
GGCACGGGATGACTTCTCTGCATTGCAGAGCAGGCATCGGTACTTGGTGT
CGCCGTCGCGGTCATCGTGGCGTGCCAGATGCTTGCGCAGGCTCCGTTCG
TCCCGCAGCCAGCGGCCGCACAGGGTACACTGCACCTCCGCCACCGGCCC
GTCCGGATGCAACGCCTTCTTGTGGATGAGAAAGTTGGCCTTGCTCCTGA
AGTGTGTACCGCATATGTCGCATATGATGGGCGTAAAGTCTGCCGCATGC
ATGCGCTTTACATGGGCACTTAGCTCAAACTTGGTGCGGAATGTCTTGCT
GCAGGTGTCGCACACCTCGGGACGCTCGGTGCCCTTGTGTCCTTTAAGAT
GCATGGTCAGCANGAATTTCTTGGCAAAGCGCGCCTCGCAGATGGCACAC
TGGTGGACCAGCTCTTGCTGCTGCGAGTGGAAGCGCAGCATGTGCATCAC
CTGGCTGTTTGCGTTAANGGA
BO01589.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-PA | 1995 | CG11696-RA | 1102..1992 | 909..19 | 4436 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-RA | 2235 | CG11696-RA | 1229..2119 | 909..19 | 4444 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11575254..11575639 | 742..357 | 1930 | 100 | Minus |
| X | 23542271 | X | 11575698..11576036 | 357..19 | 1695 | 100 | Minus |
| X | 23542271 | X | 11575028..11575194 | 909..743 | 824 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:48:16 has no hits.
BO01589.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:42 Download gff for
BO01589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-PA | 1092..1995 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:24 Download gff for
BO01589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-PA | 1092..1995 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:33:29 Download gff for
BO01589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 1219..2126 | 12..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:49 Download gff for
BO01589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 1219..2126 | 12..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:49 Download gff for
BO01589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11575698..11576043 | 12..357 | 99 | | Minus |
| X | 11575018..11575194 | 743..920 | 97 | -> | Minus |
| X | 11575254..11575638 | 358..742 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:33:29 Download gff for
BO01589.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11469051..11469227 | 743..920 | 97 | -> | Minus |
| arm_X | 11469287..11469671 | 358..742 | 100 | -> | Minus |
| arm_X | 11469731..11470076 | 12..357 | 99 | | Minus |
BO01589.5prime Sequence
810 bp (716 high quality bases) assembled on 2005-11-30
> BO01589.5prime
GAAGTTATCAGTCGACATGATATGCCGACTCTGCCTGGAGGATGCTGAGC
ACGGGGTGCCCATTTTCGGCCAGGAACCGCCAATGGGACAACCGGCACAT
CGCCAGCTGGCCGAGCTGATCGAGCGACATCTGCTGCTGGTGTTGGCGGA
AAACGACGTGGTGTCCACGTGCCTGTGCAACCGCTGCTGGCGGCAGCTGG
CCGAGATCGAGCAATTCTGTTCCATGGTAGCGGAGAAGCAGCGGTCGCTG
CACCGCTCCTTGCAGCTGAAAACTGAATTGCCGGAGCTGCCCGAACTGAC
GGAGCCGGAGCCCGCCCTGGTCGTGTGGAACACGGAGTCGCCAATCGAGC
CAAAGCTCAGCTATGAGGGCGATGACATCAAGGATCACATACTGTGCGAA
CCCGTCATCGACGCCTTGTCCGCGGGCGATGAAAAAGACAGTGACTATGG
CGACACCTTTGAACCGGACTTCGAGCCGGAATCGCAGCCAGATGAAGAAG
AAGAACCGGAGCCGGATCCGGTAAAACCGCGCCCCAGGGGCAGGCCGCGC
AAAACTGCGCTGCAGCAAACGCATCAAATCATCAAAAGGAAGTACGAGAA
GCGCAAACAGCAGAACAAGGCCAAGATCACAGAGTTATCATTACGGGAAT
CAAGAGCCCGGCAAAGGGAACTTAAACGCAGCAGTGCTGGAGCAGAGGAT
GATCAGGATGGCGACGAAGACGAGGAGGACGAAGAAGATGTCGGGGGCGA
GCTAACACCAGATGCCGACGAACAGCCAAAGCCGCGCGGCAAACGTGGGC
GACCCCAGAC
BO01589.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-PA | 1995 | CG11696-RA | 1..789 | 17..805 | 3920 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-RA | 2235 | CG11696-RA | 128..921 | 17..810 | 3940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11574052..11574720 | 142..810 | 3315 | 99.7 | Plus |
| X | 23542271 | X | 11573858..11573983 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 15:51:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 557..655 | 711..809 | 134 | 62 | Plus |
BO01589.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:42 Download gff for
BO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-PA | 1..794 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:26 Download gff for
BO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-PA | 1..794 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:41 Download gff for
BO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 119..921 | 5..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:00 Download gff for
BO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 119..921 | 5..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:00 Download gff for
BO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11573849..11573983 | 5..142 | 96 | -> | Plus |
| X | 11574053..11574720 | 143..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:41 Download gff for
BO01589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11467882..11468016 | 5..142 | 96 | -> | Plus |
| arm_X | 11468086..11468753 | 143..810 | 99 | | Plus |
BO01589.complete Sequence
2026 bp assembled on 2007-03-23
GenBank Submission: FJ629544
> BO01589.complete
GAAGTTATCAGTCGACATGATATGCCGACTCTGCCTGGAGGATGCTGAGC
ACGGGGTGCCCATTTTCGGCCAGGAACCGCCAATGGGACAACCGGCACAT
CGCCAGCTGGCCGAGCTGATCGAGCGACATCTGCTGCTGGTGTTGGCGGA
AAACGACGTGGTGTCCACGTGCCTGTGCAACCGCTGCTGGCGGCAGCTGG
CCGAGATCGAGCAATTCTGTTCCATGGTAGCGGAGAAGCAGCGGTCGCTG
CACCGCTCCTTGCAGCTGAAAACTGAATTGCCGGAGCTGCCCGAACTGAC
GGAGCCGGAGCCCGCCCTGGTCGTGTGGAACACGGAGTCGCCAATCGAGC
CAAAGCTCAGCTATGAGGGCGATGACATCAAGGATCACATACTGTGCGAA
CCCGTCATCGACGCCTTGTCCGCGGGCGATGAAAAAGACAGTGACTATGG
CGACACCTTTGAACCGGACTTCGAGCCGGAATCGCAGCCAGATGAAGAAG
AAGAACCGGAGCCGGATCCGGTAAAACCGCGCCCCAGGGGCAGGCCGCGC
AAAACTGCGCTGCAGCAAACGCATCAAATCATCAAAAGGAAGTACGAGAA
GCGCAAACAGCAGAACAAGGCCAAGATCACAGAGTTATCATTACGGGAAT
CAAGAGCCCGGCAAAGGGAACTTAAACGCAGCAGTGCTGGAGCAGAGGAT
GATCAGGATGGCGACGAAGACGAGGAGGACGAAGAAGATGTCGGGGGCGA
GCTAACACCAGATGCCGACGAACAGCCAAAGCCGCGCGGCAAACGTGGCC
GACCCAAGACCAAGAAACTGGTAACCGCCGACGATAATGATGATACCTCG
GAGGTGCCCGTCAAGCGCAGCAGCATCAAGGAAATGGACGACTATATAGC
CGCCAATGTTAAGCTCGACTGCGCCATTTGCGCCGCCCCGCTGGAAGACT
TCAACGATCTCAAGCGCCACTTTCGCGTGGAGCACGACTGCACTGGCTAT
GTGAAGTGCTGCAACAATCGGTACAAGAAGCGGACACTGTACGTCGACCA
TTTGCACTGCCACAAGGATCCGCAGTACTTTAGCTGCCAGAGCTGCCGCA
AGAACTTCCTTAACCGCAACAGCCAGGTGATGCACATGCTGCGCTTCCAC
TCGCAGCAGCAAGAGCTGGTCCACCAGTGTGCCATCTGCGAGGCGCGCTT
TGCCAAGAAATTCCTGCTGACCATGCATCTTAAAGGACACAAGGGCACCG
AGCGTCCCGAGGTGTGCGACACCTGCAGCAAGACATTCCGCACCAAGTTT
GAGCTAAGTGCCCATGTAAAGCGCATGCATGCGGCAGACTTTACGCCCAT
CATATGCGACATATGCGGTACACACTTCAGGAGCAAGGCCAACTTTCTCA
TCCACAAGAAGGCGTTGCATCCGGACGGGCCGGTGGCGGAGGTGCAGTGT
ACCCTGTGCGGCCGCTGGCTGCGGGACGAACGGAGCCTGCGCAAGCATCT
GGCACGCCACGATGACCGCGACGGCGACACCAAGTACCGATGCCTGCTCT
GCAATGCAGAGAAGTCATCCCGTGCCGCACTCAGCAGCCACATGCGGTAC
CATCACTCCGCCAAGCGGCACAAGTGCAGTCTCTGCGACAAGGAGTTCAA
GCTGCCGCGGGCATTGGCCGAGCACATGGCCACTCACACGGGCATCGATC
TGTACCAATGCCAGTTTTGTACGCGCACCTTCAAGTCTCATGCCAACATG
CACAACCACAAGAAGAAGATGCATCCCAACGACTGGGTGAGAAAGTACTC
GCAGCCCAGCAGTAGCATTACCTCCACAGCGGCTCCACTTGCTCATCCCA
ATCATCCTAACCAGCCTGCTCCTCCAGCGGCAGCTCCGACTAATCTAGCC
GGGCACATGCTGCCGCCACTCGGTGGCATTGCCAAGTCGCTGATTGAGAT
ACCCGATACCGAGGGCTTCGATTTCGGCAGCAACAGCTCCGTGTGCCCCA
CGCCCGACGCAAGCTTTCTAGACCAT
BO01589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-RA | 1995 | CG11696-PA | 1..1992 | 17..2008 | 9960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-RA | 2235 | CG11696-RA | 128..2119 | 17..2008 | 9960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11574052..11575194 | 142..1284 | 5715 | 100 | Plus |
| X | 23542271 | X | 11575254..11575639 | 1285..1670 | 1930 | 100 | Plus |
| X | 23542271 | X | 11575698..11576036 | 1670..2008 | 1695 | 100 | Plus |
| X | 23542271 | X | 11573858..11573983 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 17:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 557..667 | 711..818 | 150 | 64.3 | Plus |
BO01589.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:41 Download gff for
BO01589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 1..1995 | 17..2011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:57 Download gff for
BO01589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 49..2056 | 5..2015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:57 Download gff for
BO01589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 128..2119 | 17..2010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:41 Download gff for
BO01589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 49..2056 | 5..2015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:52 Download gff for
BO01589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11696-RA | 128..2119 | 17..2010 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:52 Download gff for
BO01589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11575698..11576036 | 1670..2010 | 99 | | Plus |
| X | 11573858..11573983 | 17..142 | 100 | -> | Plus |
| X | 11574053..11575194 | 143..1284 | 100 | -> | Plus |
| X | 11575254..11575638 | 1285..1669 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:57 Download gff for
BO01589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11467891..11468016 | 17..142 | 100 | -> | Plus |
| arm_X | 11468086..11469227 | 143..1284 | 100 | -> | Plus |
| arm_X | 11469287..11469671 | 1285..1669 | 100 | -> | Plus |
| arm_X | 11469731..11470069 | 1670..2010 | 99 | | Plus |
BO01589.pep Sequence
Translation from 16 to 2026
> BO01589.pep
MICRLCLEDAEHGVPIFGQEPPMGQPAHRQLAELIERHLLLVLAENDVVS
TCLCNRCWRQLAEIEQFCSMVAEKQRSLHRSLQLKTELPELPELTEPEPA
LVVWNTESPIEPKLSYEGDDIKDHILCEPVIDALSAGDEKDSDYGDTFEP
DFEPESQPDEEEEPEPDPVKPRPRGRPRKTALQQTHQIIKRKYEKRKQQN
KAKITELSLRESRARQRELKRSSAGAEDDQDGDEDEEDEEDVGGELTPDA
DEQPKPRGKRGRPKTKKLVTADDNDDTSEVPVKRSSIKEMDDYIAANVKL
DCAICAAPLEDFNDLKRHFRVEHDCTGYVKCCNNRYKKRTLYVDHLHCHK
DPQYFSCQSCRKNFLNRNSQVMHMLRFHSQQQELVHQCAICEARFAKKFL
LTMHLKGHKGTERPEVCDTCSKTFRTKFELSAHVKRMHAADFTPIICDIC
GTHFRSKANFLIHKKALHPDGPVAEVQCTLCGRWLRDERSLRKHLARHDD
RDGDTKYRCLLCNAEKSSRAALSSHMRYHHSAKRHKCSLCDKEFKLPRAL
AEHMATHTGIDLYQCQFCTRTFKSHANMHNHKKKMHPNDWVRKYSQPSSS
ITSTAAPLAHPNHPNQPAPPAAAPTNLAGHMLPPLGGIAKSLIEIPDTEG
FDFGSNSSVCPTPDASFLDH
BO01589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11696-PA | 664 | CG11696-PA | 1..664 | 1..664 | 3612 | 100 | Plus |
| CG11695-PA | 544 | CG11695-PA | 1..497 | 1..586 | 1072 | 40.3 | Plus |
| CG8388-PA | 572 | CG8388-PA | 32..522 | 34..590 | 613 | 28.1 | Plus |
| CG15073-PA | 580 | CG15073-PA | 1..519 | 1..590 | 586 | 28.6 | Plus |
| grau-PA | 570 | CG33133-PA | 141..531 | 211..590 | 583 | 33.6 | Plus |
| CG8388-PA | 572 | CG8388-PA | 206..426 | 412..642 | 164 | 24.6 | Plus |
