Clone Sequence Records
BO01592.complete Sequence
2084 bp assembled on 2010-04-12
> BO01592.complete
GAAGTTATCAGTCGACATGGCCGCGAAACTGGAGGTGCGCGAGGCCATGC
TGACCGAGAAGAGGGTCTGCCGCTTCTGTCTGACCGAGCAGAAGCTGGCC
TCGATTTTCGAGGAGAATCCGCGGGTGAAAACAACCGCCAATCTGCCGCT
GCAGATTATGGCCATCACGGCGATCGAGGTCTACGCCGGCGACGGAATGC
CGGGGCACATCTGTCTGGAGTGCCGCCTCCTCTTCGAGCACTGCTACCGC
TTCAAGCAGATGTGCAAGCGGGCGGAGACCCTCCTGCGCCAGTATCCGCT
CACGGGTAACTGGCCATCGCCGCTGGAGAAGCCCCGTGCGCCCATGACGA
TGGTGGCTTCCAAGAAGTTGTTGGTCGTGCCAGCAAAGACAGCCGAGCCA
AGCGAAACGCCCAAAAAGCTGCTGAACACAATGGCCAAATCCAGTAGTCA
GGTGATCATCGAGGACGTCCAGGTGCTGGAGAGCGCCATGGTGACCCCCA
GGACGGTAGCCGGTTCCTCTCCAGTGCCACGTCGTTCGCACGCCTATGAG
CTGAAGGTGGATAACAACCAGGAGCTGTCCATGGACGATGTGCAGAGCAT
GCTGGAGGATATGGCCAGTGAGCTAGAGAAGGAGTTCCCCGATATCCCCC
AGAAGGCATCACCCGTCAAGCCGAAGGTGCTGAACAAGTCCTCGATTAGG
ATCTTGAACAAGGGACCCGCCGCTCCGGTGGAACCGCGCCTGGCCACACC
CAAAGTCAAGCGAGATGATAGTGGCAATGTGGCCATAGTGACAGAGGTTC
TGGACTCGGATCTGCCATTGGACGATCAAGATGATCCGACCAAGAACGCC
GAGAAGGTGGCCACCGATGTGTTCCCCTGTCCCGATTGCGAACGCTCCTT
TCCGCTGCAGCAGCTGCTCGAGATCCATCGGCTGAATCACACTCGCTCGC
GCAGCTTCCAGTGTCTCCTGTGCGAGAAGAGCTTCTTCTCCAAGTACGAC
CTGGCCAAGCACAACTTTGTGCACACCGGCGAGCGGCCATTCAAGTGCGC
CATCTGCTCGAAAGCCTTCACACGGAAGGCATTGCTCCATCGCCACGAGC
GCACCCACACGGACGTACCCAAGTTCATCTGCGTGTACTGCGAGAAGCCC
TTCCTTTCGCGCCAGGAGATGGAGAAGCACGCCGAGCGACATCAGAAGAA
GCGTCCGTTCCAATGCGGTGTCTGCACCAAGTCGTTTGCCTTCAAGCAGG
GATTGGAGCGTCATGAGACAGTCCACTCCACCAATCTTCCCTTCCCCTGT
CAGCATTGCGAGAGAAGCTTTTCCACCGCTTCCAAGCTGGCCCGCCACCT
GGTTGCCCACGCCGGGAAGAGAGCCTATCCCTGCAAGTACTGCCACAAGT
CCTACATGCTGTCGCATCATCTCTCGCGCCACCTGCGCACGCACACGCAG
ACTTCCGACGCCTCGTTCGTGTGCAGTGAGTGCAAGGTGTCGTACAGCAA
CTATAACGACCTACTGGATCATGCGCTCATTCATGCCACCGCCAGCCTGA
AATGTCCCATGTGTCGCAAGCAGATCGAAGATATCGACAGTGTCGAGAGC
CACATGGACCAGCACAAGCAGAGCGAGCGCCATGCCTGCGAGTTCTGTGA
CCACATCTTCTTGACGCAGAAATGCCTGCAGCGCCACATCGAGGACGATC
ATGTGGTGGAAATGGAGCCGTACCAGAACGAGTTCGAAGACGACGGCGAA
GGAGAAGGCGGCGTCGATGAGAAGGAGGAACATCTTGACGATTTTGAAGA
CATGGACAATGTGAAGCAGGAAGAATTCGTGACGGAATACTTAGAAGACG
ATGCTCTCTATGAGGACCACCTAGACGATAGCGACGAATCCTTCACGCCG
CCGCCTCCAAAGCAGCGTAAAACCAATCCTCCCAAGGATGCCCAGCAATC
CGTGCGCCAAACTCGCAGTCGGGATGCTCAAAGAATCACTCAGAAGACAG
GAAAGAACGAAGGCAAGCCTCATCACAAACTGGAACGCAACCTTAAGAAT
CGCCGATCCGCAAAATGCAAGCTTTCTAGACCAT
BO01592.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2052 | CG3941-PA | 1..2050 | 17..2066 | 10250 | 100 | Plus |
| pita-RB | 1872 | CG3941-PB | 1..1870 | 197..2066 | 9350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2472 | CG3941-RA | 297..2346 | 17..2066 | 10250 | 100 | Plus |
| pita-RB | 2529 | CG3941-RB | 514..2403 | 177..2066 | 9450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23549948..23551038 | 1267..177 | 5455 | 100 | Minus |
| 2R | 25286936 | 2R | 23549093..23549893 | 2066..1266 | 4005 | 100 | Minus |
| 2R | 25286936 | 2R | 23554253..23554416 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:50:36 has no hits.
BO01592.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:25:17 Download gff for
BO01592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 303..2352 | 17..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:37 Download gff for
BO01592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 297..2346 | 17..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:48 Download gff for
BO01592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 297..2346 | 17..2068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:48 Download gff for
BO01592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23554255..23554416 | 17..178 | 100 | | Minus |
| 2R | 23549091..23549891 | 1268..2068 | 99 | <- | Minus |
| 2R | 23549948..23551036 | 179..1267 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:37 Download gff for
BO01592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19436614..19437414 | 1268..2068 | 99 | <- | Minus |
| arm_2R | 19437471..19438559 | 179..1267 | 100 | <- | Minus |
| arm_2R | 19441778..19441939 | 17..178 | 100 | | Minus |
BO01592.3prime Sequence
908 bp (724 high quality bases) assembled on 2005-11-30
> BO01592.3prime
ATGGTCTAGAAAGCTTGCATTTTGCGGATCGGCGATTCTTAAGGTTGCGT
TCCAGTTTGTGATGAGGCTTGCCTTCGTTCTTTCCTGTCTTCTGAGTGAT
TCTTTGAGCATCCCGACTGCGAGTTTGGCGCACGGATTGCTGGGCATCCT
TGGGAGGATTGGTTTTACGCTGCTTTGGAGGCGGCGGCGTGAAGGATTCG
TCGCTATCGTCTAGGTGGTCCTCATAGAGAGCATCGTCTTCTAAGTATTC
CGTCACGAATTCTTCCTGCTTCACATTGTCCATGTCTTCAAAATCGTCAA
GATGTTCCTCCTTCTCATCGACGCCGCCTTCTCCTTCGCCGTCGTCTTCG
AACTCGTTCTGGTACGGCTCCATTTCCACCACATGATCGTCCTCGATGTG
GCGCTGCAGGCATTTCTGCGTCAAGAAGATGTGGTCACAGAACTCGCAGG
CATGGCGCTCGCTCTGCTTGTGCTGGTCCATGTGGCTCTCGACACTGTCG
ATATCTTCGATCTGCTTGCGACACATGGGACATTTCAGGCTGGCGGTGGC
ATGAATGAGCGCATGATCCAGTAGGTCGTTATAGTTGCTGTACGACACCT
TGCACTCACTGCACACGAACGAGGCGTCGGAAGTCTGCGTGTGCGTGCGC
AGGTGGCGCGAGAGATGATGCGACAGCATGTAGGACTTGTGGCAGTACTT
GCAGGGATAGGCTCTCTTCCCGGCGTGGGCAACCAGGTGGCGGGCCAGCT
TGGAAGCGGTGGAAAAGCTTCTCTCGNCATGCTGACAGGGGAAGGGAAGA
TTGGTGGAGTGGACTGTCTCATGACGCTCCAATCCCTGCTTTGAGGCAAA
CGACTTGGTGCAGACACCGCATTGGAACGGACGCTTCTTCTGATGTCGCT
CGGCGTGC
BO01592.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3941-PA | 2052 | pita-RA | 1161..2050 | 908..19 | 4356 | 99.5 | Minus |
| CG3941-PB | 1872 | pita-RB | 981..1870 | 908..19 | 4356 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RB | 2529 | CG3941-RB | 1514..2403 | 908..19 | 4394 | 99.6 | Minus |
| pita-RA | 2472 | CG3941-RA | 1457..2346 | 908..19 | 4394 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23549093..23549893 | 19..819 | 3979 | 99.8 | Plus |
| 2R | 25286936 | 2R | 23549948..23550038 | 818..908 | 425 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:03:35 has no hits.
BO01592.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:46 Download gff for
BO01592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PB | 981..1872 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:29 Download gff for
BO01592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PB | 981..1872 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:33 Download gff for
BO01592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 1457..2348 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:27 Download gff for
BO01592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 1457..2348 | 15..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:27 Download gff for
BO01592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23549091..23549891 | 15..817 | 99 | <- | Plus |
| 2R | 23549948..23550038 | 818..908 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:33 Download gff for
BO01592.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19436614..19437414 | 15..817 | 99 | <- | Plus |
| arm_2R | 19437471..19437561 | 818..908 | 97 | | Plus |
BO01592.5prime Sequence
804 bp (792 high quality bases) assembled on 2006-10-30
> BO01592.5prime
GAAGTTATCAGTCGACATGGCCGCGAAACTGGAGGTGCGCGAGGCCATGC
TGACCGAGAAGAGGGTCTGCCGCTTCTGTCTGACCGAGCAGAAGCTGGCC
TCGATTTTCGAGGAGAATCCGCGGGTGAAAACAACCGCCAATCTGCCGCT
GCAGATTATGGCCATCACGGCGATCGAGGTCTACGCCGGCGACGGAATGC
CGGGGCACATCTGTCTGGAGTGCCGCCTCCTCTTCGAGCACTGCTACCGC
TTCAAGCAGATGTGCAAGCGGGCGGAGACCCTCCTGCGCCAGTATCCGCT
CACGGGTAACTGGCCATCGCCGCTGGAGAAGCCCCGTGCGCCCATGACGA
TGGTGGCTTCCAAGAAGTTGTTGGTCGTGCCAGCAAAGACAGCCGAGCCA
AGCGAAACGCCCAAAAAGCTGCTGAACACAATGGCCAAATCCAGTAGTCA
GGTGATCATCGAGGACGTCCAGGTGCTGGAGAGCGCCATGGTGACCCCCA
GGACGGTAGCCGGTTCCTCTCCAGTGCCACGTCGTTCGCACGCCTATGAG
CTGAAGGTGGATAACAACCAGGAGCTGTCCATGGACGATGTGCAGAGCAT
GCTGGAGGATATGGCCAGTGAGCTAGAGAAGGAGTTCCCCGATATCCCCC
AGAAGGCATCACCCGTCAAGCCGAAGGTGCTGAACAAGTCCTCGATTAGG
ATCTTGAACAAGGGACCCGCCGCTCCGGTGGAACCGCGCCTGGCCACACC
CAAAGTCAAGCGAGATGATAGTGGCAATGTGGCCATAGTGACAGAGGTTC
TGGA
BO01592.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3941-PA | 2052 | pita-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
| CG3941-PB | 1872 | pita-RB | 1..608 | 197..804 | 3040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2472 | CG3941-RA | 297..1084 | 17..804 | 3940 | 100 | Plus |
| pita-RB | 2529 | CG3941-RB | 514..1141 | 177..804 | 3140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23550411..23551038 | 804..177 | 3140 | 100 | Minus |
| 2R | 25286936 | 2R | 23554253..23554416 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:39:21 has no hits.
BO01592.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:47 Download gff for
BO01592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:30 Download gff for
BO01592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:31:04 Download gff for
BO01592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 295..1083 | 13..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:51 Download gff for
BO01592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 295..1083 | 13..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:51 Download gff for
BO01592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23550412..23551036 | 179..803 | 100 | <- | Minus |
| 2R | 23554255..23554418 | 13..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:31:04 Download gff for
BO01592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19437935..19438559 | 179..803 | 100 | <- | Minus |
| arm_2R | 19441778..19441941 | 13..178 | 98 | | Minus |
BO01592.pep Sequence
Translation from 16 to 2083
> BO01592.pep
MAAKLEVREAMLTEKRVCRFCLTEQKLASIFEENPRVKTTANLPLQIMAI
TAIEVYAGDGMPGHICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWP
SPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLNTMAKSSSQVIIED
VQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLEDMA
SELEKEFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRD
DSGNVAIVTEVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERSFPLQQL
LEIHRLNHTRSRSFQCLLCEKSFFSKYDLAKHNFVHTGERPFKCAICSKA
FTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQC
GVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAHAG
KRAYPCKYCHKSYMLSHHLSRHLRTHTQTSDASFVCSECKVSYSNYNDLL
DHALIHATASLKCPMCRKQIEDIDSVESHMDQHKQSERHACEFCDHIFLT
QKCLQRHIEDDHVVEMEPYQNEFEDDGEGEGGVDEKEEHLDDFEDMDNVK
QEEFVTEYLEDDALYEDHLDDSDESFTPPPPKQRKTNPPKDAQQSVRQTR
SRDAQRITQKTGKNEGKPHHKLERNLKNRRSAKCKLSRP
BO01592.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-PA | 683 | CG3941-PA | 1..683 | 1..683 | 3644 | 100 | Plus |
| pita-PB | 623 | CG3941-PB | 1..623 | 61..683 | 3346 | 100 | Plus |
| crol-PG | 878 | CG14938-PG | 276..552 | 285..562 | 478 | 32.3 | Plus |
| crol-PD | 878 | CG14938-PD | 276..552 | 285..562 | 460 | 32.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 31..409 | 194..560 | 455 | 29.4 | Plus |
| crol-PG | 878 | CG14938-PG | 333..647 | 286..568 | 452 | 30.2 | Plus |
| crol-PG | 878 | CG14938-PG | 216..492 | 281..558 | 449 | 28.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 221..491 | 286..558 | 439 | 33.2 | Plus |
| CG5245-PA | 501 | CG5245-PA | 297..492 | 279..474 | 387 | 37.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 274..490 | 284..502 | 370 | 33.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 381..493 | 279..391 | 203 | 34.5 | Plus |
