Clone Sequence Records
BO01595.3prime Sequence
829 bp (806 high quality bases) assembled on 2005-11-30
> BO01595.3prime
ATGGTCTAGAAAGCTTGCGAAGGCCAACCAAGGATGGTGCAATAGTGACT
CCTTCGATCGGTCCCCGTAGTCATAGGTCAGTTCCTCGCCCGGCTCGATG
TCGTCCTTGGCCAGGAGTACGAGATGCGGCCGCTGTTTGATAAGTACTAC
TTTGGTCATTAGGTTACCAGCCCGCGAGTGATTGATGAGGCGCCCCAGCT
TGCCGGTGTCAACGGTTGCATCGATGCAGTACTGCTGGGACTTGTGCTTG
AAGTAGTACATATAGCACCCAGCATTCTCGTCCAACGCATAGCGTTTCTC
CCGTTCCGCGGCTTCGCCTATAGATATGAGATCTCCCACATACTCAACCA
CAAATTCGTTGCGTTTAAAGGGCCGATCGGCGACTACGCCTCTTCCCTTG
CCCATAAAGTGGCGTACTTGGAGACCATCGCAGCGCTCTTCCAGCACTGC
TTGCTCCAAGCCTCGCATCCATTCCTCCTTGACGGCCGTCTTAGTCTTGC
GCACACTCCTTCGCACCGGGAAGAAGTCCGTCATCTCACGATTGCCGTTG
GTGGCAGCCAAGGGCAGCGGCGGTTGTCCCTTCGTTGGCCCCTTGCTTTT
GGTCTTTGATTTCACGGGCGCAGGCTTGAGCATCGTTTTCATGCCTGCTT
TGTTGCTGTTCGCTGTGGCTGGTGCTTTGTTCTGGTTTTCACGCTCCTCG
GCAGCCTTGATCAGGGCTCGAACGTCGTCCTCGTCATCTCCTTCATCATC
GTCGTCGTCTAGCACCACGACGATATCATCCTGCTGCTGCTGCTGCTGTT
GTGACGGTGGTTTCTGTAGCTGTGGCTGG
BO01595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3307-PC | 2076 | pr-set7-RC | 1263..2073 | 829..19 | 4055 | 100 | Minus |
| CG3307-PA | 2076 | pr-set7-RA | 1263..2073 | 829..19 | 4055 | 100 | Minus |
| CG3307-PB | 2076 | pr-set7-RB | 1263..2073 | 829..19 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 1428..2238 | 829..19 | 4055 | 100 | Minus |
| pr-set7-RB | 4183 | CG3307-RB | 1634..2444 | 829..19 | 4055 | 100 | Minus |
| pr-set7-RA | 3311 | CG3307-RA | 1564..2374 | 829..19 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14317945..14318755 | 829..19 | 4055 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmau\mariner | 1286 | Dmau\mariner DMMAR 1286bp Derived from M14653 (Rel. 63, Last updated, Version 2). | 368..434 | 690..624 | 119 | 64.2 | Minus |
BO01595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:49 Download gff for
BO01595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1263..2076 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:33 Download gff for
BO01595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1263..2076 | 16..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:47 Download gff for
BO01595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 1559..2369 | 19..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:09 Download gff for
BO01595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 1564..2374 | 19..829 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:09 Download gff for
BO01595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14317945..14318755 | 19..829 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:47 Download gff for
BO01595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10143667..10144477 | 19..829 | 100 | | Minus |
BO01595.5prime Sequence
649 bp (469 high quality bases) assembled on 2005-11-30
> BO01595.5prime
GAAGTTATCAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCA
AGGAAGCCGCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATT
CCTGTTGACCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGA
TCAGTATTTTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCA
CTCAAAATGGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGAC
AACAAAGCGGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAAC
TCGCACCATTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCC
AAAAGACAATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTG
AAACTGGACGATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGT
GCTAAAGCTGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACG
AAGTAGATGCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAG
GTGGTGGAGGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTC
GCCCTTTTATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAAACT
BO01595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3307-PC | 2076 | pr-set7-RC | 1..629 | 17..645 | 3145 | 100 | Plus |
| CG3307-PA | 2076 | pr-set7-RA | 1..629 | 17..645 | 3145 | 100 | Plus |
| CG3307-PB | 2076 | pr-set7-RB | 1..629 | 17..645 | 3145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 166..798 | 17..649 | 3150 | 99.8 | Plus |
| pr-set7-RB | 4183 | CG3307-RB | 372..1004 | 17..649 | 3150 | 99.8 | Plus |
| pr-set7-RA | 3311 | CG3307-RA | 302..934 | 17..649 | 3150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14316937..14317315 | 271..649 | 1880 | 99.7 | Plus |
| 3R | 32079331 | 3R | 14316612..14316868 | 17..273 | 1285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:08:29 has no hits.
BO01595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:50 Download gff for
BO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1..633 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:34 Download gff for
BO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1..633 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:48 Download gff for
BO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 289..929 | 9..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:45:08 Download gff for
BO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 294..934 | 9..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:45:08 Download gff for
BO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14316604..14316867 | 9..272 | 98 | -> | Plus |
| 3R | 14316939..14317315 | 273..649 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:48 Download gff for
BO01595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10142326..10142589 | 9..272 | 98 | -> | Plus |
| arm_3R | 10142661..10143037 | 273..649 | 99 | | Plus |
BO01595.complete Sequence
2107 bp (2107 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629545
> BO01595.complete
GAAGTTATCAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCA
AGGAAGCCGCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATT
CCTGTTGACCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGA
TCAGTATTTTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCA
CTCAAAATGGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGAC
AACAAAGCGGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAAC
TCGCACCATTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCC
AAAAGACAATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTG
AAACTGGACGATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGT
GCTAAAGCTGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACG
AAGTAGATGCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAG
GTGGTGGAGGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTC
GCCCTTTTATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAGACTC
CAGAAATTCCACACATCAAAAAGGTCACAGAGCCGCTCGAGGGACTGGGC
TCTCTGGCCGACTTCCAGACACATCGCTCTGCGCTGAGGGACAGCCACAG
TTCCACGCACAGCAGCAGCACCGACAACATCTTCCTGCAGGAGCCGGTAC
TGACCCTGGACATTGATCGCACGCCCACCAAAGCCTCCAGCATAAAGATC
AATCGGAGCTTCGAACTGGCCGGAGCCGTATTCTCATCACCTCCGTCGGT
GCTAAACGCCTGTCTCAATGGACGCTTCAATCAAATAGTAAGCCTGAATG
GACAAAAGGAGGCGCTGGACTTGCCGCACTTCGATTTGGATCAACATGAC
AGTAGTTCTTGCGACAGCGGAGTAGCCTGTGGTCTCACTGCCAATACAGA
ATCGCCAGCGGGGCAACCCCGACGCAGAAAACCAGCCACACCGCATCGCA
TCCTCTGCCCCTCGCCAATCAAAACGGCTTTGAAGGTAACTGGAGGGATT
TGCAAGGTCGGATCTGCGGATCCATTGTCGCCGCGCAAGTCTCCTCGAAA
ACTGCCGACCACAACAGCAGCGGTGGCAGCCTGCAAGTCGCGTCGAAGAC
TGAACCAGCCAAAGCCACAAGCGCCTTACCAGCCACAGCTACAGAAACCA
CCGTCACAACAGCAGCAGCAGCAGCAGGATGATATCGTCGTGGTGCTAGA
CGACGACGATGATGAAGGAGATGACGAGGACGACGTTCGAGCCCTGATCA
AGGCTGCCGAGGAGCGTGAAAACCAGAACAAAGCACCAGCCACAGCGAAC
AGCAACAAAGCAGGCATGAAAACGATGCTCAAGCCTGCGCCCGTGAAATC
AAAGACCAAAAGCAAGGGGCCAACGAAGGGACAACCGCCGCTGCCCTTGG
CTGCCACCAACGGCAATCGTGAGATGACGGACTTCTTCCCGGTGCGAAGG
AGTGTGCGCAAGACTAAGACGGCCGTCAAGGAGGAATGGATGCGAGGCTT
GGAGCAAGCAGTGCTGGAAGAGCGCTGCGATGGTCTCCAAGTACGCCACT
TTATGGGCAAGGGAAGAGGCGTAGTCGCCGATCGGCCCTTTAAACGCAAC
GAATTTGTGGTTGAGTATGTGGGAGATCTCATATCTATAGGCGAAGCCGC
GGAACGGGAGAAACGCTATGCGTTGGACGAGAATGCTGGGTGCTATATGT
ACTACTTCAAGCACAAGTCCCAGCAGTACTGCATCGATGCAACCGTTGAC
ACCGGCAAGCTGGGGCGCCTCATCAATCACTCGCGGGCTGGTAACCTAAT
GACCAAAGTAGTACTTATCAAACAGCGGCCGCATCTCGTACTCCTGGCCA
AGGACGACATCGAGCCGGGCGAGGAACTGACCTATGACTACGGGGACCGA
TCGAAGGAGTCACTATTGCACCATCCTTGGTTGGCCTTCGCAAGCTTTCT
AGACCAT
BO01595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 2076 | CG3307-PD | 1..2073 | 17..2089 | 10365 | 100 | Plus |
| pr-set7-RB | 2076 | CG3307-PB | 1..2073 | 17..2089 | 10365 | 100 | Plus |
| pr-set7-RA | 2076 | CG3307-PA | 1..2073 | 17..2089 | 10365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 166..2238 | 17..2089 | 10365 | 100 | Plus |
| pr-set7-RB | 4183 | CG3307-RB | 372..2444 | 17..2089 | 10365 | 100 | Plus |
| pr-set7-RA | 3311 | CG3307-RA | 302..2374 | 17..2089 | 10365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14316937..14318755 | 271..2089 | 9095 | 100 | Plus |
| 3R | 32079331 | 3R | 14316612..14316868 | 17..273 | 1285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmau\mariner | 1286 | Dmau\mariner DMMAR 1286bp Derived from M14653 (Rel. 63, Last updated, Version 2). | 368..434 | 1418..1484 | 119 | 64.2 | Plus |
BO01595.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:12 Download gff for
BO01595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RB | 1..2076 | 17..2092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:17 Download gff for
BO01595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RB | 359..2439 | 9..2089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:27 Download gff for
BO01595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 297..2369 | 17..2091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:12 Download gff for
BO01595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RB | 359..2439 | 9..2089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:14 Download gff for
BO01595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 302..2374 | 17..2091 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:14 Download gff for
BO01595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14316612..14316867 | 17..272 | 100 | -> | Plus |
| 3R | 14316939..14318755 | 273..2091 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:27 Download gff for
BO01595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10142334..10142589 | 17..272 | 100 | -> | Plus |
| arm_3R | 10142661..10144477 | 273..2091 | 99 | | Plus |
BO01595.pep Sequence
Translation from 16 to 2107
> BO01595.pep
MIMVRRRQRPAKEAASSSSGGASSGSGIPVDQALPLNVAGNLLEDQYFAS
PKRKDCRLMKVTQNGQLPEATMMAHNKDNKAGRTIGVPLATRSQTRTIEN
FFKANAAAKDSQKTIHTEEQLNLGNQELKLDDEELNGQIKLDDEVLKLAD
KQINENLPFADEVDAKAEQKLMDEELQQVVEELLFDGSSRASSNSPFYQH
DMDVMQEIQQTPEIPHIKKVTEPLEGLGSLADFQTHRSALRDSHSSTHSS
STDNIFLQEPVLTLDIDRTPTKASSIKINRSFELAGAVFSSPPSVLNACL
NGRFNQIVSLNGQKEALDLPHFDLDQHDSSSCDSGVACGLTANTESPAGQ
PRRRKPATPHRILCPSPIKTALKVTGGICKVGSADPLSPRKSPRKLPTTT
AAVAACKSRRRLNQPKPQAPYQPQLQKPPSQQQQQQQDDIVVVLDDDDDE
GDDEDDVRALIKAAEERENQNKAPATANSNKAGMKTMLKPAPVKSKTKSK
GPTKGQPPLPLAATNGNREMTDFFPVRRSVRKTKTAVKEEWMRGLEQAVL
EERCDGLQVRHFMGKGRGVVADRPFKRNEFVVEYVGDLISIGEAAEREKR
YALDENAGCYMYYFKHKSQQYCIDATVDTGKLGRLINHSRAGNLMTKVVL
IKQRPHLVLLAKDDIEPGEELTYDYGDRSKESLLHHPWLAFASFLDH
BO01595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-PD | 691 | CG3307-PD | 1..691 | 1..691 | 3569 | 100 | Plus |
| pr-set7-PB | 691 | CG3307-PB | 1..691 | 1..691 | 3569 | 100 | Plus |
| pr-set7-PA | 691 | CG3307-PA | 1..691 | 1..691 | 3569 | 100 | Plus |
| trr-PC | 2410 | CG3848-PC | 2280..2385 | 565..675 | 168 | 35.1 | Plus |
| trr-PD | 2431 | CG3848-PD | 2301..2406 | 565..675 | 168 | 35.1 | Plus |
