Clone Sequence Records
BO01601.3prime Sequence
921 bp (769 high quality bases) assembled on 2005-11-30
> BO01601.3prime
ATGGTCTAGAAAGCTTGCGTAACCAGTCTCTGGCTCCTGTTTAAGTGTCA
TGCGACAGGGTTCCGTTCCATAACCAGCGGGTGCGGTTAGCATCTCGGGA
GCCCGGATCTTCAGTGGAGTTCGTCGCAGCAGCTCCTCGGCACTGCTACC
CTCGCTCCGGTTGTACTCGTTGAGCGTAATATCGGCAGGATTGCGCAGAC
CCAATCCGCCGCCCCCGCTGGACACTTCGACCGGCGAGGCGACTGCTCTT
TGGTAGGGATGCATCCTCTGGGGACTGTGCTGTGTTGGCAGCGGTCCGGA
CCGACTGCCATTGTAGTGCTTGACGGGCATGTCCAAGTAGGAGCTCTCCT
GTTGTTGCTGATGCGTCGCATGTTGCTGATGTTGATGTTGTGACTTGGGG
CTGTTGAGCGGAGGAGAGATCGAGGCTGGAGCAACGGATGCGGGTGCAGA
GGAGGAGGACGAGACGGCTGCAGCGGCTGCCGCTGCAGTGCTGGCCGCGT
AGGCCCGGAAGGAATCATCCGCACTGTTCGCCTCGATAAGAGCCTGAATG
TGCTGCACCTCCAGGTCCAGACTATGCGAGCCAGGACCACCGGACGTGGC
CAGCGAGTCCAGAGAGGAGTTAACTTGATTACCGCCCTCCATGTTGCCTG
TGTGGGTGGGACTCTGGTAGTCATTTGACTGATTGGGCGGCGATAGCGGC
AGAGGATTGTCGGCCAACTCTCCTCCCAACAACATTTCCTGCAGTAATGA
ATCAATGTGGGCCACTCCAAAGATCTTTGGCAACTGGATCTGCTCGATCA
TCTGCCAGGTAATAGACTGCAGAAACGGCAGGATGAGCAGAATCTCGCCA
AAGCGACCGCGCGACTCGTATTGCCGATCTGATATGTAGTCCTCGAGATT
ATTGAGTATCTGATGCCGTAG
BO01601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9310-PA | 2115 | Hnf4-RA | 1354..2112 | 777..19 | 3795 | 100 | Minus |
| CG9310-PB | 2199 | Hnf4-RB | 1438..2196 | 777..19 | 3795 | 100 | Minus |
| CG9310-PC | 2001 | Hnf4-RC | 1240..1998 | 777..19 | 3795 | 100 | Minus |
| CG9310-PA | 2115 | Hnf4-RA | 1210..1349 | 921..782 | 675 | 99.2 | Minus |
| CG9310-PB | 2199 | Hnf4-RB | 1294..1433 | 921..782 | 675 | 99.2 | Minus |
| CG9310-PC | 2001 | Hnf4-RC | 1096..1235 | 921..782 | 675 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RE | 3876 | CG9310-RE | 2419..3321 | 921..19 | 4455 | 99.7 | Minus |
| Hnf4-RF | 2791 | CG9310-RF | 1361..2263 | 921..19 | 4455 | 99.7 | Minus |
| Hnf4-RD | 3600 | CG9310-RD | 2170..3072 | 921..19 | 4455 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8687889..8688550 | 63..724 | 3310 | 100 | Plus |
| 2L | 23513712 | 2L | 8688620..8688819 | 722..921 | 940 | 98 | Plus |
| 2L | 23513712 | 2L | 8687781..8687825 | 19..63 | 225 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 02:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2456 | 449..305 | 153 | 61.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6802 | 406..346 | 140 | 74.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6860 | 406..337 | 135 | 71.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2390 | 406..346 | 131 | 70.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6781 | 406..346 | 131 | 72.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6891 | 493..350 | 121 | 56.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6802 | 397..305 | 118 | 61.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2598..2654 | 406..346 | 115 | 70.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1152 | 406..350 | 113 | 74.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1576 | 403..347 | 110 | 70 | Minus |
BO01601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:51 Download gff for
BO01601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-PA | 1210..2115 | 18..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:36 Download gff for
BO01601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9310-PC | 1096..2001 | 18..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:44:08 Download gff for
BO01601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RB | 1309..2211 | 19..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:01 Download gff for
BO01601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RD | 2170..3072 | 19..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:01 Download gff for
BO01601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8688621..8688819 | 723..921 | 98 | | Plus |
| 2L | 8687781..8687824 | 19..62 | 100 | <- | Plus |
| 2L | 8687889..8688548 | 63..722 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:44:08 Download gff for
BO01601.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8687781..8687824 | 19..62 | 100 | <- | Plus |
| arm_2L | 8687889..8688548 | 63..722 | 100 | <- | Plus |
| arm_2L | 8688621..8688819 | 723..921 | 98 | | Plus |
BO01601.5prime Sequence
870 bp (733 high quality bases) assembled on 2005-11-30
> BO01601.5prime
GAAGTTATCAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGG
ATGACCAGCAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAG
TTGCACGACCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGC
CTCTGCCTATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCC
TCAGCCCCAATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGC
AGCGAGAACTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGG
AGGCGGAAGTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCAC
CCAACAACAACTTGAGCGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAG
CAATTGCAGCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTG
TGGAGATCGGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCT
GCAAAGGATTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGC
AGATTTGCGCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCG
CTACTGCCGGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGG
TGCAAAACGAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGAC
CCGGATCCGGGCAATGGGCTGTCTGTGATTTCCTTGGGTAAGGCGGAGAA
TGAGTCGCGTCAGTCGAAGGCAGGCGCTGCCATGGAGCCAAACATTAACG
AGGACCTCTCCCAACAGCAGTTCGCGAGCATCAACGATGTCTGCGAGTCG
ATGAAGCAGCAGCTGCTGAC
BO01601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9310-PA | 2115 | Hnf4-RA | 1..795 | 17..811 | 3950 | 99.8 | Plus |
| CG9310-PB | 2199 | Hnf4-RB | 180..879 | 112..811 | 3475 | 99.8 | Plus |
| CG9310-PC | 2001 | Hnf4-RC | 1..681 | 131..811 | 3380 | 99.8 | Plus |
| CG9310-PA | 2115 | Hnf4-RA | 800..854 | 816..870 | 275 | 100 | Plus |
| CG9310-PB | 2199 | Hnf4-RB | 884..938 | 816..870 | 275 | 100 | Plus |
| CG9310-PC | 2001 | Hnf4-RC | 686..740 | 816..870 | 275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RE | 3876 | CG9310-RE | 1209..2063 | 16..870 | 4215 | 99.6 | Plus |
| Hnf4-RA | 3307 | CG9310-RA | 640..1494 | 16..870 | 4215 | 99.6 | Plus |
| Hnf4-RB | 2739 | CG9310-RB | 195..953 | 112..870 | 3735 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8689814..8690253 | 552..113 | 2200 | 100 | Minus |
| 2L | 23513712 | 2L | 8689308..8689629 | 870..549 | 1550 | 98.8 | Minus |
| 2L | 23513712 | 2L | 8704361..8704458 | 113..16 | 490 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 268..433 | 232 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 298..427 | 224 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 302..433 | 220 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 313..426 | 215 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 230..422 | 204 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 230..435 | 202 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 268..425 | 197 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 230..426 | 185 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 321..437 | 172 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 230..368 | 162 | 62.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 298..436 | 159 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 230..425 | 154 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 268..361 | 139 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 311..421 | 136 | 59.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1182 | 268..363 | 115 | 61.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7376..7455 | 263..346 | 112 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1582 | 313..341 | 109 | 86.2 | Plus |
BO01601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:52 Download gff for
BO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:37 Download gff for
BO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9310-PA | 1..854 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:50 Download gff for
BO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 887..1741 | 16..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:12 Download gff for
BO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 640..1494 | 16..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:12 Download gff for
BO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8689308..8689625 | 553..870 | 99 | <- | Minus |
| 2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
| 2L | 8704361..8704458 | 16..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:50 Download gff for
BO01601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8689308..8689625 | 553..870 | 99 | <- | Minus |
| arm_2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
| arm_2L | 8704361..8704458 | 16..113 | 100 | | Minus |
BO01601.complete Sequence
2146 bp (2146 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629546
> BO01601.complete
GAAGTTATCAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGG
ATGACCAGCAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAG
TTGCACGACCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGC
CTCTGCCTATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCC
TCAGCCCCAATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGC
AGCGAGAACTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGG
AGGCGGAAGTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCAC
CCAACAACAACTTGAGCGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAG
CAATTGCAGCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTG
TGGAGATCGGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCT
GCAAAGGATTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGC
AGATTTGCGCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCG
CTACTGCCGGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGG
TGCAAAACGAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGAC
CCGGATCCGGGCAATGGGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAA
TGAGTCGCGTCAGTCGAAGGCAGGCGCTGCCATGGAGCCAAACATTAACG
AGGACCTCTCCAACAAGCAGTTCGCGAGCATCAACGATGTCTGCGAGTCG
ATGAAGCAGCAGCTGCTGACCCTGGTGGAATGGGCTAAGCAGATTCCGGC
CTTTAACGAGCTGCAGCTGGATGACCAGGTGGCACTGCTACGCGCCCATG
CTGGCGAGCATTTGCTCCTCGGCCTGTCTCGTCGTTCGATGCACTTGAAG
GATGTTCTCCTGCTGAGCAACAATTGTGTGATCACAAGGCACTGTCCAGA
TCCCCTTGTGTCGCCGAATTTGGACATCTCCCGGATCGGCGCCCGTATCA
TCGATGAACTGGTGACGGTCATGAAGGATGTGGGTATCGATGACACTGAA
TTCGCTTGCATCAAGGCCCTAGTCTTCTTCGATCCCAATGCCAAGGGTCT
TAATGAACCGCATCGCATCAAATCGCTACGGCATCAGATACTCAATAATC
TCGAGGACTACATATCAGATCGGCAATACGAGTCGCGCGGTCGCTTTGGC
GAGATTCTGCTCATCCTGCCGGTTCTGCAGTCTATTACCTGGCAGATGAT
CGAGCAGATCCAGTTTGCCAAGATCTTTGGAGTGGCCCACATTGATTCAT
TACTGCAGGAAATGTTGTTGGGAGGAGAGTTGGCCGACAATCCTCTGCCG
CTATCGCCGCCCAATCAGTCAAATGACTACCAGAGTCCCACCCACACAGG
CAACATGGAGGGCGGTAATCAAGTTAACTCCTCTCTGGACTCGCTGGCCA
CGTCCGGTGGTCCTGGCTCGCATAGTCTGGACCTGGAGGTGCAGCACATT
CAGGCTCTTATCGAGGCGAACAGTGCGGATGATTCCTTCCGGGCCTACGC
GGCCAGCACTGCAGCGGCAGCCGCTGCAGCCGTCTCGTCCTCCTCCTCTG
CACCCGCATCCGTTGCTCCAGCCTCGATCTCTCCTCCGCTCAACAGCCCC
AAGTCACAACATCAACATCAGCAACATGCGACGCATCAGCAACAACAGGA
GAGCTCCTACTTGGACATGCCCGTCAAGCACTACAATGGCAGTCGGTCCG
GACCGCTGCCAACACAGCACAGTCCCCAGAGGATGCATCCCTACCAAAGA
GCAGTCGCCTCGCCGGTCGAAGTGTCCAGCGGGGGCGGCGGATTGGGTCT
GCGCAATCCTGCCGATATTACGCTCAACGAGTACAACCGGAGCGAGGGTA
GCAGTGCCGAGGAGCTGCTGCGACGAACTCCACTGAAGATCCGGGCTCCC
GAGATGCTAACCGCACCCGCTGGTTATGGAACGGAACCCTGTCGCATGAC
ACTTAAACAGGAGCCAGAGACTGGTTACGCAAGCTTTCTAGACCAT
BO01601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RE | 2115 | CG9310-PE | 1..2112 | 17..2128 | 10560 | 100 | Plus |
| Hnf4-RA | 2115 | CG9310-PA | 1..2112 | 17..2128 | 10560 | 100 | Plus |
| Hnf4-RB | 2199 | CG9310-PB | 180..2196 | 112..2128 | 10085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-RE | 3876 | CG9310-RE | 1209..3321 | 16..2128 | 10565 | 100 | Plus |
| Hnf4-RA | 3307 | CG9310-RA | 640..2752 | 16..2128 | 10565 | 100 | Plus |
| Hnf4-RB | 2739 | CG9310-RB | 195..2211 | 112..2128 | 10085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8687889..8688550 | 2084..1423 | 3310 | 100 | Minus |
| 2L | 23513712 | 2L | 8689129..8689629 | 1049..549 | 2505 | 100 | Minus |
| 2L | 23513712 | 2L | 8689814..8690253 | 552..113 | 2200 | 100 | Minus |
| 2L | 23513712 | 2L | 8688620..8688857 | 1425..1188 | 1190 | 100 | Minus |
| 2L | 23513712 | 2L | 8688921..8689063 | 1187..1045 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 8704361..8704458 | 113..16 | 490 | 100 | Minus |
| 2L | 23513712 | 2L | 8687781..8687825 | 2128..2084 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 268..433 | 232 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 298..427 | 224 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 302..433 | 220 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 313..426 | 215 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 230..422 | 204 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 230..435 | 202 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 268..425 | 197 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 230..426 | 185 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 321..437 | 172 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 230..368 | 162 | 62.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 298..436 | 159 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 230..425 | 154 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2456 | 1698..1842 | 153 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6802 | 1741..1801 | 140 | 74.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 268..361 | 139 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 311..421 | 136 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6860 | 1741..1810 | 135 | 71.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2390 | 1741..1801 | 131 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6781 | 1741..1801 | 131 | 72.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6891 | 1654..1797 | 121 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6802 | 1750..1842 | 118 | 61.1 | Plus |
BO01601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:36 Download gff for
BO01601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 1..2115 | 17..2129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:21 Download gff for
BO01601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 637..2748 | 17..2130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:07 Download gff for
BO01601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 888..2999 | 17..2130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:36 Download gff for
BO01601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 636..2748 | 16..2128 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:08 Download gff for
BO01601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hnf4-RA | 641..2752 | 17..2130 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:08 Download gff for
BO01601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
| 2L | 8704361..8704457 | 17..113 | 100 | | Minus |
| 2L | 8687779..8687824 | 2085..2130 | 95 | <- | Minus |
| 2L | 8687889..8688548 | 1425..2084 | 100 | <- | Minus |
| 2L | 8688621..8688857 | 1188..1424 | 100 | <- | Minus |
| 2L | 8688921..8689058 | 1050..1187 | 100 | <- | Minus |
| 2L | 8689129..8689625 | 553..1049 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:07 Download gff for
BO01601.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8687779..8687824 | 2085..2130 | 95 | <- | Minus |
| arm_2L | 8687889..8688548 | 1425..2084 | 100 | <- | Minus |
| arm_2L | 8688621..8688857 | 1188..1424 | 100 | <- | Minus |
| arm_2L | 8688921..8689058 | 1050..1187 | 100 | <- | Minus |
| arm_2L | 8689129..8689625 | 553..1049 | 100 | <- | Minus |
| arm_2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
| arm_2L | 8704361..8704457 | 17..113 | 100 | | Minus |
BO01601.pep Sequence
Translation from 16 to 2146
> BO01601.pep
MMKHPQDLSVTDDQQLMKVNKVEKMEQELHDPESESHIMHADALASAYPA
ASQPHSPIGLALSPNGGGLGLSNSSNQSSENFALCNGNGNAGSAGGGSAS
SGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRAT
GKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR
KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQS
KAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQ
LDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSP
NLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHR
IKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQF
AKIFGVAHIDSLLQEMLLGGELADNPLPLSPPNQSNDYQSPTHTGNMEGG
NQVNSSLDSLATSGGPGSHSLDLEVQHIQALIEANSADDSFRAYAASTAA
AAAAAVSSSSSAPASVAPASISPPLNSPKSQHQHQQHATHQQQQESSYLD
MPVKHYNGSRSGPLPTQHSPQRMHPYQRAVASPVEVSSGGGGLGLRNPAD
ITLNEYNRSEGSSAEELLRRTPLKIRAPEMLTAPAGYGTEPCRMTLKQEP
ETGYASFLDH
BO01601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hnf4-PE | 704 | CG9310-PE | 1..704 | 1..704 | 3662 | 100 | Plus |
| Hnf4-PA | 704 | CG9310-PA | 1..704 | 1..704 | 3662 | 100 | Plus |
| Hnf4-PD | 708 | CG9310-PD | 30..708 | 26..704 | 3503 | 99.4 | Plus |
| Hnf4-PB | 732 | CG9310-PB | 61..732 | 33..704 | 3494 | 100 | Plus |
| Hnf4-PF | 666 | CG9310-PF | 1..666 | 39..704 | 3464 | 100 | Plus |
