Clone BO01604 Report

Search the DGRC for BO01604

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:16
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptlola-RA
Protein status:BO01604.pep: validated full length
Sequenced Size:2152

Clone Sequence Records

BO01604.3prime Sequence

757 bp (605 high quality bases) assembled on 2005-11-30

> BO01604.3prime
ATGGTCTAGAAAGCTTGCCAATCCCTCCCCGTTAAGCAGTTCAGTGGTGG
AGGTAGTGGAGTTGCCGCTGGCCACCACTGCAGCTGCAGCTGCCACTTGC
TGAAGAGCCTGCTGTAGAAGGGCCTGCTGCCGCAGTTGCTGCCGGTAATA
GTTACTGGTGGTCGACTCCTCCGTTGTCAATTGTGATTGCTGATGCTGCG
GGAGTTCATCCTCATCGTCATCTTCGACTAGATAGGCGTGCTGATGATCC
TCATCCGCAGCGGCCACAGATCCATCGTCCAGCATGTCCACCAGATCTAC
AATTTCCGTCTCGGGCTTCTGATCCTCTCCTTCGACGGCTGAGGCTGCCG
CAGCTGCAGCTCTTTGCTGACGCTTAAACAACGATCGCATGGCTATCTCC
GGATGCTTTTTTCGTACATGCTGGCGCAGATGATCTGCCCGCTTCGTGCG
ATGACCGCAGACGGAGCACACCATGCTCTTTCCCTTGCCGCACTCCTGGC
GCAGGTGCCGCCGCAAGGTTCCGTGCCTTCGATAAGTTCTATAACACTGT
GGGCACGTAAAGCTCTCCTCCTGACCCCCCATTTCCTGCTCCGCCAACTA
CACTATTTTCGCCGGCTAATAATCCTTGAAAATGATCAAATTGCGGTGCA
TGGAAGTGATGCAGGGATCCCGATCCCTGGTGATAGTCATCGCTGCTGCC
CTCCATCAGCTCCAGCTTGCTGCCATTTAGATGATTCTGGTGGCTTGAGG
ATGAGTC

BO01604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12052-PA 2121 lola-RA 1558..2118 579..19 2805 100 Minus
CG12052-PA 2121 lola-RA 1381..1562 757..576 810 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RA 2902 CG12052-RA 1783..2520 757..19 3610 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10523879..10524616 19..757 3585 99.3 Plus
Blast to na_te.dros performed on 2015-02-09 18:19:23 has no hits.

BO01604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:52 Download gff for BO01604.3prime
Subject Subject Range Query Range Percent Splice Strand
lola-PA 1381..2121 18..757 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:39 Download gff for BO01604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12052-PA 1381..2121 18..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:54:58 Download gff for BO01604.3prime
Subject Subject Range Query Range Percent Splice Strand
lola-RA 1783..2520 19..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:09:58 Download gff for BO01604.3prime
Subject Subject Range Query Range Percent Splice Strand
lola-RA 1783..2520 19..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:09:58 Download gff for BO01604.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10523879..10524616 19..757 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:54:58 Download gff for BO01604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6411384..6412121 19..757 99   Plus

BO01604.5prime Sequence

785 bp (738 high quality bases) assembled on 2005-11-30

> BO01604.5prime
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
AGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCCACAACA
GCAGCCATTGACCAGCACCAACGTTACCAAAAAGA

BO01604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12052-PX 1809 lola-RX 1..769 17..785 3820 99.8 Plus
CG12052-PG 2676 lola-RG 1..769 17..785 3820 99.8 Plus
CG12052-PI 2913 lola-RI 1..769 17..785 3820 99.8 Plus
CG12052-PF 1698 lola-RF 1..769 17..785 3820 99.8 Plus
CG12052-PO 2007 lola-RO 1..769 17..785 3820 99.8 Plus
CG12052-PJ 2274 lola-RJ 1..769 17..785 3820 99.8 Plus
CG12052-PL 1827 lola-RL 1..769 17..785 3820 99.8 Plus
CG12052-PR 2676 lola-RR 1..769 17..785 3820 99.8 Plus
CG12052-PY 1734 lola-RY 1..769 17..785 3820 99.8 Plus
CG12052-PP 2892 lola-RP 1..769 17..785 3820 99.8 Plus
CG12052-PN 2637 lola-RN 1..769 17..785 3820 99.8 Plus
CG12052-PK 1641 lola-RK 1..769 17..785 3820 99.8 Plus
CG12052-PQ 1812 lola-RQ 1..769 17..785 3820 99.8 Plus
CG12052-PS 2163 lola-RS 1..769 17..785 3820 99.8 Plus
CG12052-PT 1728 lola-RT 1..769 17..785 3820 99.8 Plus
CG12052-PA 2121 lola-RA 1..769 17..785 3820 99.8 Plus
CG12052-PM 1398 lola-RM 1..769 17..785 3820 99.8 Plus
CG12052-PH 1557 lola-RH 1..769 17..785 3820 99.8 Plus
CG12052-PD 2247 lola-RD 1..769 17..785 3820 99.8 Plus
CG12052-PC 2364 lola-RC 1..769 17..785 3820 99.8 Plus
CG12052-PE 2247 lola-RE 1..769 17..785 3820 99.8 Plus
CG12052-PW 2316 lola-RW 1..769 17..785 3820 99.8 Plus
CG12052-PU 1728 lola-RU 1..769 17..785 3820 99.8 Plus
CG12052-PV 1650 lola-RV 1..769 17..785 3820 99.8 Plus
CG12052-PB 2364 lola-RB 1..769 17..785 3820 99.8 Plus
CG12052-PZ 1998 lola-RZ 1..769 17..785 3820 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RAA 4623 CG12052-RA 607..1375 17..785 3830 99.9 Plus
lola-RZ 2707 CG12052-RZ 403..1171 17..785 3830 99.9 Plus
lola-RB 2974 CG12052-RB 397..1165 17..785 3830 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10533118..10533511 584..191 1970 100 Minus
2R 25286936 2R 10532694..10532895 785..584 995 99.5 Minus
2R 25286936 2R 10533576..10533749 190..17 870 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:30:11 has no hits.

BO01604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:53 Download gff for BO01604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12052-PS 1..768 17..784 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:40 Download gff for BO01604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12052-PZ 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:24 Download gff for BO01604.5prime
Subject Subject Range Query Range Percent Splice Strand
lola-RB 393..1164 9..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:11:41 Download gff for BO01604.5prime
Subject Subject Range Query Range Percent Splice Strand
lola-RB 393..1164 9..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:11:41 Download gff for BO01604.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10532695..10532894 585..784 99 <- Minus
2R 10533118..10533511 191..584 100 <- Minus
2R 10533576..10533753 9..190 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:24 Download gff for BO01604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6420200..6420399 585..784 99 <- Minus
arm_2R 6420623..6421016 191..584 100 <- Minus
arm_2R 6421081..6421258 9..190 97   Minus

BO01604.complete Sequence

2152 bp assembled on 2007-03-23

GenBank Submission: FJ629547

> BO01604.complete
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
AGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACA
GCAGCCATTGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAAC
TAACATCCTCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCT
GTACAACAGGCCCATCTGCATCAGCAGCAGGCGCAGACCACAAGCGATGC
CATTAACACCGAGAATGTACAAGCCCAGAGCCAAGGTGGCGCCCAAGGCG
TCCAAGGCGATGACGAGGACATTGATGAGGGTAGTGCCGTTGGCGGACCA
AACTCGGCCACCGGACCCAATCCCGCCTCCGCCTCTGCATCCGCCGTCCA
TGCCGGAGTTGTGGTAAAGCAGCTGGCCAGCGTTGTGGACAAATCGTCGT
CGAATCACAAACATAAGATCAAAGACAACAGCGTGTCATCAGTGGGCTCC
GAAATGGTTATTGAACCCAAAGCCGAATACGATGACGATGCGCACGATGA
GAATGTTGAGGATTTGACACTGGACGAGGAGGACATGACAATGGAGGAGC
TGGACCAGACGGCCGGCACCAGCCAGGGTGGCGAAGGATCTAGTCAAACA
TATGCAACATGGCAGCACGACAGATCTCAGGATGAACTTGGACTAATGGC
ACAGGATGCACAGCAACGGGATCCCCAAGGCCTGCAGCTGATAGACGACT
CATCCTCAAGCCAACAGAATCATCTAAATGGCAGCAAGCTGGAGCTGATG
GATGGCAGCAGCGATGACTATCACCAGGGATCGGGATCCTTGCATCACTT
CCATGCACCGCAATTTGATCATTTTCAAGGATTATTAGCCGGCGGAAATA
GTGTAGTTGGCGGAGCAGGAAATGGGGGTCAGGAGGAGAGCTTTACGTGC
CCACAGTGTTATAGAACTTATCGAAGGCACGGAACCTTGCGGCGGCACCT
GCGCCAGGAGTGCGGCAAGGGAAAGAGCATGGTGTGCTCCGTCTGCGGTC
ATCGCACGAAGCGGGCAGATCATCTGCGCCAGCATGTACGAAAAAAGCAT
CCGGAGATAGCCATGCGATCGTTGTTTAAGCGTCAGCAAAGAGCTGCAGC
TGCGGCAGCCTCAGCCGTCGAAGGAGAGGATCAGAAGCCCGAGACGGAAA
TTGTAGATCTGGTGGACATGCTGGACGATGGATCTGTGGCCGCTGCGGAT
GAGGATCATCAGCACGCCTATCTAGTCGAAGATGACGATGAGGATGAACT
CCCGCAGCATCAGCAATCACAATTGACAACGGAGGAGTCGACCACCAGTA
ACTATTACCGGCAGCAACTGCGGCAGCAGGCCCTTCTACAGCAGGCTCTT
CAGCAAGTGGCAGCTGCAGCTGCAGTGGTGGCCAGCGGCAACTCCACTAC
CTCCACCACTGAACTGCTTAACGGGGAGGGATTGGCAAGCTTTCTAGACC
AT

BO01604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RA 2121 CG12052-PA 1..2118 17..2134 10590 100 Plus
lola-RL 1827 CG12052-PL 1..1369 17..1385 6830 99.9 Plus
lola-RE 2247 CG12052-PE 1..1368 17..1384 6825 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RA 2902 CG12052-RA 403..2520 17..2134 10590 100 Plus
lola-RL 2823 CG12052-RL 403..1771 17..1385 6830 99.9 Plus
lola-RE 3417 CG12052-RE 397..1764 17..1384 6825 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10523879..10524635 2134..1378 3785 100 Minus
2R 25286936 2R 10532181..10532895 1298..584 3575 100 Minus
2R 25286936 2R 10533118..10533511 584..191 1970 100 Minus
2R 25286936 2R 10533576..10533749 190..17 870 100 Minus
2R 25286936 2R 10532038..10532119 1380..1299 410 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:04:36 has no hits.

BO01604.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:37 Download gff for BO01604.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RA 1..2121 17..2135 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:50 Download gff for BO01604.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RA 396..2517 9..2134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:07 Download gff for BO01604.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RA 403..2520 17..2136 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:37 Download gff for BO01604.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RA 396..2517 9..2134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:50 Download gff for BO01604.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RA 403..2520 17..2136 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:50 Download gff for BO01604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10523877..10524633 1380..2136 99 <- Minus
2R 10532039..10532119 1299..1379 100 <- Minus
2R 10532181..10532894 585..1298 100 <- Minus
2R 10533118..10533511 191..584 100 <- Minus
2R 10533576..10533749 17..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:07 Download gff for BO01604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6411382..6412138 1380..2136 99 <- Minus
arm_2R 6419544..6419624 1299..1379 100 <- Minus
arm_2R 6419686..6420399 585..1298 100 <- Minus
arm_2R 6420623..6421016 191..584 100 <- Minus
arm_2R 6421081..6421254 17..190 100   Minus

BO01604.pep Sequence

Translation from 16 to 2152

> BO01604.pep
MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVL
SACSPYFATLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQL
AALLKAAESLQIKGLSDNRTGGGVAPKPESSGHHRGGKLSGAYTLEQTKR
ARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDAHDNSNSSVL
QAAASNQSILQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPLTS
TNVTKKTESAKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSDAINTEN
VQAQSQGGAQGVQGDDEDIDEGSAVGGPNSATGPNPASASASAVHAGVVV
KQLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDL
TLDEEDMTMEELDQTAGTSQGGEGSSQTYATWQHDRSQDELGLMAQDAQQ
RDPQGLQLIDDSSSSQQNHLNGSKLELMDGSSDDYHQGSGSLHHFHAPQF
DHFQGLLAGGNSVVGGAGNGGQEESFTCPQCYRTYRRHGTLRRHLRQECG
KGKSMVCSVCGHRTKRADHLRQHVRKKHPEIAMRSLFKRQQRAAAAAASA
VEGEDQKPETEIVDLVDMLDDGSVAAADEDHQHAYLVEDDDEDELPQHQQ
SQLTTEESTTSNYYRQQLRQQALLQQALQQVAAAAAVVASGNSTTSTTEL
LNGEGLASFLDH

BO01604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
lola-PA 706 CG12052-PA 1..706 1..706 3599 100 Plus
lola-PO 668 CG12052-PO 1..620 1..609 2418 79.7 Plus
lola-PF 565 CG12052-PF 1..555 1..574 2361 83.7 Plus
lola-PE 748 CG12052-PE 1..553 1..603 2339 80.2 Plus
lola-PD 748 CG12052-PD 1..553 1..603 2339 80.2 Plus