Clone Sequence Records
BO01611.5prime Sequence
669 bp (659 high quality bases) assembled on 2005-11-30
> BO01611.5prime
GAAGTTATCAGTCGACATGGTCTGCAAAACTATCTCACCGAGTGTAAACA
TGCAGCTGAAGATGGAACAGCAGACAACGCAGCAGCAGCAGCAGCAACAG
CAACAGCAACAGCAACAGCAACAATTGCAACAGCAACAGCATCAGGCTCT
AACCAAGCAGCAGCTTCAACTGCTGGACAAAATCAAACTCGAGTCCAGCA
ACGGCGCCGATCAGTTGGCCCAGCAGACGGCCAACAATCTGGATGAGCAG
CAGGAGCAGCAGCAACAACACCAACAGCAAGCCGCAACATCGGTGGGCGT
GGTGGTGCAGACGGGCCAAGCGGGCGTCAGCGAACCGGAGGAGCAGTACG
TGGTGGTGCCACGCAACCAGCGCCGTATTCTCACCACAGCCGGCACACTT
GAATTAAACGAAGCTCGTGAAGGAGAACCGAGCACAAACGCCAGCAACGC
GAGCTCAGGATCTGCTTCGGATAGCCACATCGAGTACCAGCGCAGTGCAC
ACCAATCTCCCGGAGCCACTCACTACGTGCAGATGGCGCCACGCAACGCA
GAGGTGACGGAACAGGTGGGAGCTGCTGCCGGAGCTCCGCCGGGCACCAT
CTTCGCCTATCCTATTATCTGCAACGGTGACGATGTGGCCGCGATCAAAA
TCGAAACACTCGAGAAGGG
BO01611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10278-PA | 2241 | GATAe-RA | 1..653 | 17..669 | 3265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RA | 3086 | CG10278-RA | 466..1118 | 17..669 | 3265 | 100 | Plus |
| GATAe-RC | 2879 | CG10278-RC | 301..911 | 59..669 | 3055 | 100 | Plus |
| GATAe-RB | 2983 | CG10278-RB | 408..1015 | 62..669 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16016226..16016565 | 60..399 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 16016709..16016978 | 400..669 | 1350 | 100 | Plus |
| 3R | 32079331 | 3R | 16012739..16012787 | 17..65 | 230 | 98 | Plus |
Blast to na_te.dros performed 2015-02-13 14:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 60..289 | 346 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6922 | 90..293 | 314 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2496 | 88..291 | 286 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2665 | 67..289 | 265 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2573..2832 | 28..291 | 258 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6901 | 103..280 | 238 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6493..6950 | 49..481 | 201 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6940..7209 | 21..291 | 200 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2442 | 156..288 | 174 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6866 | 156..294 | 165 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1151 | 176..291 | 160 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2391 | 246..291 | 155 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6778 | 234..293 | 153 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1111 | 246..296 | 152 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 220..291 | 150 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6818 | 195..291 | 144 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2292..2418 | 163..291 | 143 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2364 | 226..291 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1574 | 246..293 | 129 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2430 | 167..291 | 127 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1161 | 196..279 | 127 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6835 | 196..293 | 124 | 66.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 963..1011 | 227..275 | 119 | 71.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7986 | 248..279 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9430 | 248..279 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6793 | 246..280 | 112 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1552..1591 | 243..282 | 110 | 75 | Plus |
| BS | 5142 | BS BS 5142bp | 2032..2074 | 238..277 | 109 | 76.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3265..3320 | 230..280 | 106 | 71.4 | Plus |
BO01611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:57 Download gff for
BO01611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-PA | 1..653 | 17..669 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:46 Download gff for
BO01611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10278-PA | 1..653 | 17..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:58:01 Download gff for
BO01611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1118 | 17..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:38:27 Download gff for
BO01611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..1118 | 17..669 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:38:27 Download gff for
BO01611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16012739..16012783 | 17..61 | 100 | -> | Plus |
| 3R | 16016228..16016565 | 62..399 | 100 | -> | Plus |
| 3R | 16016709..16016978 | 400..669 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:58:01 Download gff for
BO01611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11838461..11838505 | 17..61 | 100 | -> | Plus |
| arm_3R | 11841950..11842287 | 62..399 | 100 | -> | Plus |
| arm_3R | 11842431..11842700 | 400..669 | 100 | | Plus |
BO01611.3prime Sequence
676 bp (639 high quality bases) assembled on 2005-11-30
> BO01611.3prime
ATGGTCTAGAAAGCTTGCGTTATTCGATGATCGCTCTGGCAGACCAGTGC
GCGTGATTACGCTGGGGGTCAGTTCAGTGTTGGAGCTGCGACTGCTTTCG
ATGGTGGGTACTGGCTGAACTATCTGACGGTTTATCGGCACCGTGCCGGG
CAGATGGGGCGATTGACTCTGTGGCGTTGATTGCTGACTGTAAGGAGAAT
GGCTCTCGCCGGTCACGTGATGACGGGCGGACATGTTGAGCGTTCCGTCG
GGGGTGGGCGGCGCCGTCGCATTCAGCGAAATGGACACCACCCGTTGCCC
ACCCGCTTGACCCGTCGTCGACATGTCGTGCAGCTCCGGACTGGAATTCT
GCTGGCTATTAAGCTGGCTATTCAGCATGCTAACTGGCACTTGGGAAGGA
TACAGCGGACTGTTGGCCATCAGGTTGACTCCCTGCGACATGCTCGGCAG
CGGTGCTCGGTGCATGGGTGCTCCTCCGTTGTTCTTAGGCTTCCGTTTGC
GCTTCTGGATGCCCTCCTTCTTCATCGACAGCGGTCGGTTCATGTTGTGC
AGCTTGTAGTACAGTCCGCAGGCATTGCACACCGGATTGCCCTCGTTGTT
GCGACGCCACAGGGTCGTCGAGTTGGTCTGACAGTTGGCGCAGGTGACCC
CGTTGCGCCGGTTGGTGGGGGCGGGC
BO01611.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10278-PA | 2241 | GATAe-RA | 1583..2238 | 674..19 | 3255 | 99.8 | Minus |
| CG3978-PB | 1467 | pnr-RB | 559..615 | 603..547 | 160 | 91.2 | Minus |
| CG3978-PA | 1623 | pnr-RA | 715..771 | 603..547 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RC | 2879 | CG10278-RC | 1841..2496 | 674..19 | 3265 | 99.8 | Minus |
| GATAe-RB | 2983 | CG10278-RB | 1945..2600 | 674..19 | 3265 | 99.8 | Minus |
| GATAe-RA | 3086 | CG10278-RA | 2048..2703 | 674..19 | 3265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16018265..16018595 | 443..113 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 16017976..16018207 | 674..443 | 1145 | 99.6 | Minus |
| 3R | 32079331 | 3R | 16018657..16018750 | 112..19 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 16039336..16039457 | 603..482 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:08:40 has no hits.
BO01611.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:33:56 Download gff for
BO01611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-PA | 1582..2241 | 15..676 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:45 Download gff for
BO01611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10278-PA | 1582..2241 | 15..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:50 Download gff for
BO01611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 2047..2713 | 8..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:26 Download gff for
BO01611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 2047..2713 | 8..676 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:26 Download gff for
BO01611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16017975..16018206 | 444..676 | 99 | -> | Minus |
| 3R | 16018265..16018595 | 113..443 | 100 | -> | Minus |
| 3R | 16018657..16018760 | 8..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:50 Download gff for
BO01611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11843697..11843928 | 444..676 | 99 | -> | Minus |
| arm_3R | 11843987..11844317 | 113..443 | 100 | -> | Minus |
| arm_3R | 11844379..11844482 | 8..112 | 96 | | Minus |
BO01611.complete Sequence
2272 bp (2272 high quality bases) assembled on 2006-05-02
GenBank Submission: FJ629548
> BO01611.complete
GAAGTTATCAGTCGACATGGTCTGCAAAACTATCTCACCGAGTGTAAACA
TGCAGCTGAAGATGGAACAGCAGACAACGCAGCAGCAGCAGCAGCAACAG
CAACAGCAACAGCAACAGCAACAATTGCAACAGCAACAGCATCAGGCTCT
AACCAAGCAGCAGCTTCAACTGCTGGACAAAATCAAACTCGAGTCCAGCA
ACGGCGCCGATCAGTTGGCCCAGCAGACGGCCAACAATCTGGATGAGCAG
CAGGAGCAGCAGCAACAACACCAACAGCAAGCCGCAACATCGGTGGGCGT
GGTGGTGCAGACGGGCCAAGCGGGCGTCAGCGAACCGGAGGAGCAGTACG
TGGTGGTGCCACGCAACCAGCGCCGTATTCTCACCACAGCCGGCACACTT
GAATTAAACGAAGCTCGTGAAGGAGAACCGAGCACAAACGCCAGCAACGC
GAGCTCAGGATCTGCTTCGGATAGCCACATCGAGTACCAGCGCAGTGCAC
ACCAATCTCCCGGAGCCACTCACTACGTGCAGATGGCGCCACGCAACGCA
GAGGTGACGGAACAGGTGGGAGCTGCTGCCGGAGCTCCGCCGGGCACCAT
CTTCGCCTATCCTATTATCTGCAACGGTGACGATGTGGCCGCGATCAAAA
TCGAAACACTCGAGAAGGGAGAGGCGACGGGGGAGTCGCAACAACAGCAG
CAGCAACTGCAGCAACACCAGCATCAGCAGCAACAGCAATGTCCCACACC
CAACGGAGCTAGCTACGGCGAGACCATAGTGATCAGCAGCGAGGCGGAGG
CACTGCAGCATCACCACCAACAGCAGCAGCAGCACCAGCAGCAGCAGCAT
CAGCAGCAACACCACCAACACCAGGCGGCAGCTGCAGCATCGGCGGCGGC
CCAGACGGTTCACATTGCCACCAGTTCGCATGGTGGAACCGTGCGCTTCG
TTACGGAGGATGTACGCTTCACCACCGCCGGACCGGAGACATCCGCCTCG
AATATGTACTACGATGTACCCGTGGTGGATGGCAGTGTGCATGCCAACGA
GTCCAAGACCTACGCCGACCTAGGCAACGCATATGCCCCCTTCCCGCCCA
GCTCCAGCTTCAGTAGCAATAGCTATGCGGCAACGCTTCAGCAGGGAAAC
ACTATTTACAGTGTTCCGGGCACCGGTCAATTCTTGGCCAAGTCCGAGTC
TGGCCTAAATCAGACTGGACTGCTGCGCCAGACTGGACCGGCTACTTTTC
AGACGATATCTTTTGAGGGCGGCAACGGCATCGAGCCTTTATGGGCATCT
CCCGCCCCGCCGGAGTACCAGAGTGTTCAATTTAGCAACTTCCATCCGCA
GGTTATTGATGAATACGGGAGCGGCAATATGAGCACCTCCCACTGGCCGC
CCGCCAGCAGCATAGGGCAGTACGATGGAAGTCTGGTGACCGCCTCGTCC
ACATCGTCGCCCAACCACGAGCTAAAGTGCGAGAACTGCCATGGGCCGTT
CTTGCGGAAGGGTAGCGAGTACTTCTGTCCCAATTGCCCGGCCTTTATGC
GGATGGCGCCCCGTATAACCCAGAGGCAGGCGAAGCCCAAGGCCGCCGCC
GCCCCCAACAACCGGCGCAACGGGGTCACCTGCGCCAACTGTCAGACCAA
CTCGACGACCCTGTGGCGTCGCAACAACGAGGGCAATCCGGTGTGCAATG
CCTGCGGACTGTACTACAAGCTGCACAACATGAACCGACCGCTGTCGATG
AAGAAGGAGGGCATCCAGAAGCGCAAACGGAAGCCTAAGAACAACGGAGG
AGCACCCATGCACCGAGCACCGCTGCCGAGCATGTCGCAGGGAGTCAACC
TGATGGCCAACAGTCCGCTGTATCCTTCCCAAGTGCCAGTTAGCATGCTG
AATAGCCAGCTTAATAGCCAGCAGAATTCCAGTCCGGAGCTGCACGACAT
GTCGACGACGGGTCAAGCGGGTGGGCAACGGGTGGTGTCCATTTCGCTGA
ATGCGACGGCGCCGCCCACCCCCGACGGAACGCTCAACATGTCCGCCCGT
CATCACGTGACCGGCGAGAGCCATTCTCCTTACAGTCAGCAATCAACGCC
ACAGAGTCAATCGCCCCATCTGCCCGGCACGGTGCCGATAAACCGTCAGA
TAGTTCAGCCAGTACCCACCATCGAAAGCAGTCGCAGCTCCAACACTGAA
CTGACCCCCAGCGTAATCACGCGCACTGGTCTGCCAGAGCGATCATCGAA
TAACGCAAGCTTTCTAGACCAT
BO01611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RA | 2241 | CG10278-PA | 1..2238 | 17..2254 | 11190 | 100 | Plus |
| GATAe-RC | 2196 | CG10278-PC | 1..2193 | 62..2254 | 10965 | 100 | Plus |
| GATAe-RB | 2196 | CG10278-PB | 1..2193 | 62..2254 | 10965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-RA | 3086 | CG10278-RA | 466..2703 | 17..2254 | 11190 | 100 | Plus |
| GATAe-RC | 2879 | CG10278-RC | 301..2496 | 59..2254 | 10980 | 100 | Plus |
| GATAe-RB | 2983 | CG10278-RB | 408..2600 | 62..2254 | 10965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16016709..16017642 | 400..1333 | 4670 | 100 | Plus |
| 3R | 32079331 | 3R | 16017711..16018207 | 1334..1830 | 2485 | 100 | Plus |
| 3R | 32079331 | 3R | 16016226..16016565 | 60..399 | 1700 | 100 | Plus |
| 3R | 32079331 | 3R | 16018265..16018595 | 1830..2160 | 1655 | 100 | Plus |
| 3R | 32079331 | 3R | 16018657..16018750 | 2161..2254 | 470 | 100 | Plus |
| 3R | 32079331 | 3R | 16039336..16039457 | 1670..1791 | 265 | 81.1 | Plus |
| 3R | 32079331 | 3R | 16012739..16012787 | 17..65 | 230 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 00:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2539 | 60..289 | 346 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6946 | 46..280 | 340 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6922 | 90..293 | 314 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2496 | 88..291 | 286 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7007 | 47..291 | 286 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2970 | 688..897 | 281 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2774..2971 | 688..889 | 279 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2780..3029 | 658..904 | 279 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2665 | 74..289 | 274 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..3031 | 156..889 | 267 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2573..2832 | 28..291 | 258 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6940..7209 | 21..291 | 200 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6866 | 156..294 | 165 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1151 | 176..291 | 160 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6778 | 234..293 | 153 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1111 | 246..296 | 152 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 220..291 | 150 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6818 | 195..291 | 144 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1574 | 246..293 | 129 | 77.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1161 | 196..279 | 127 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6835 | 196..293 | 124 | 66.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 963..1011 | 227..275 | 119 | 71.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7986 | 248..279 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9430 | 248..279 | 115 | 84.4 | Plus |
BO01611.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:28 Download gff for
BO01611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 1..2241 | 17..2258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:39 Download gff for
BO01611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 469..2716 | 17..2265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:47 Download gff for
BO01611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..2703 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:28 Download gff for
BO01611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 469..2716 | 17..2265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:30 Download gff for
BO01611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GATAe-RA | 466..2703 | 17..2256 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:30 Download gff for
BO01611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16018265..16018595 | 1830..2160 | 100 | -> | Plus |
| 3R | 16018657..16018750 | 2161..2256 | 97 | | Plus |
| 3R | 16017711..16018206 | 1334..1829 | 100 | -> | Plus |
| 3R | 16016709..16017642 | 400..1333 | 100 | -> | Plus |
| 3R | 16012739..16012783 | 17..61 | 100 | -> | Plus |
| 3R | 16016228..16016565 | 62..399 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:47 Download gff for
BO01611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11842431..11843364 | 400..1333 | 100 | -> | Plus |
| arm_3R | 11838461..11838505 | 17..61 | 100 | -> | Plus |
| arm_3R | 11841950..11842287 | 62..399 | 100 | -> | Plus |
| arm_3R | 11843433..11843928 | 1334..1829 | 100 | -> | Plus |
| arm_3R | 11843987..11844317 | 1830..2160 | 100 | -> | Plus |
| arm_3R | 11844379..11844472 | 2161..2256 | 97 | | Plus |
BO01611.pep Sequence
Translation from 16 to 2272
> BO01611.pep
MVCKTISPSVNMQLKMEQQTTQQQQQQQQQQQQQQQLQQQQHQALTKQQL
QLLDKIKLESSNGADQLAQQTANNLDEQQEQQQQHQQQAATSVGVVVQTG
QAGVSEPEEQYVVVPRNQRRILTTAGTLELNEAREGEPSTNASNASSGSA
SDSHIEYQRSAHQSPGATHYVQMAPRNAEVTEQVGAAAGAPPGTIFAYPI
ICNGDDVAAIKIETLEKGEATGESQQQQQQLQQHQHQQQQQCPTPNGASY
GETIVISSEAEALQHHHQQQQQHQQQQHQQQHHQHQAAAAASAAAQTVHI
ATSSHGGTVRFVTEDVRFTTAGPETSASNMYYDVPVVDGSVHANESKTYA
DLGNAYAPFPPSSSFSSNSYAATLQQGNTIYSVPGTGQFLAKSESGLNQT
GLLRQTGPATFQTISFEGGNGIEPLWASPAPPEYQSVQFSNFHPQVIDEY
GSGNMSTSHWPPASSIGQYDGSLVTASSTSSPNHELKCENCHGPFLRKGS
EYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTTLW
RRNNEGNPVCNACGLYYKLHNMNRPLSMKKEGIQKRKRKPKNNGGAPMHR
APLPSMSQGVNLMANSPLYPSQVPVSMLNSQLNSQQNSSPELHDMSTTGQ
AGGQRVVSISLNATAPPTPDGTLNMSARHHVTGESHSPYSQQSTPQSQSP
HLPGTVPINRQIVQPVPTIESSRSSNTELTPSVITRTGLPERSSNNASFL
DH
BO01611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATAe-PA | 746 | CG10278-PA | 1..746 | 1..746 | 3902 | 100 | Plus |
| GATAe-PC | 731 | CG10278-PC | 1..731 | 16..746 | 3826 | 100 | Plus |
| GATAe-PB | 731 | CG10278-PB | 1..731 | 16..746 | 3826 | 100 | Plus |
| srp-PB | 1249 | CG3992-PB | 404..973 | 77..731 | 355 | 25 | Plus |
| srp-PE | 731 | CG3992-PE | 6..455 | 226..731 | 344 | 27.6 | Plus |
