Clone Sequence Records
BO01619.3prime Sequence
914 bp (819 high quality bases) assembled on 2005-11-30
> BO01619.3prime
ATGGTCTAGAAAGCTTGCGAGTGCCAGATTATTTCGACGACCATTGACCT
TATTGACTAAATTGCAGATTTTTAAGGCTGGTCCTAGCTTCAGGCCCATG
TACTTCATCATCATCTCTGAATTTAGCAATAATAAAGCTTTACCATCGAT
TTCGTGCTTTCGGAAGAGATCACCATGAACTGCAAGGGAGTTGTCGTTGC
TCTCGATGTACTGGATCACCTCTTCGATGGTCCAGTCGATCGGCTGCGAC
CGCAGATGTGAGTTTGCCAAAGCAGAAGTGGGCGTGCTCACGGGTGAGGT
AATCGCGGTGTAGCTCGGAGAAGCTCCCGCAGTTGCCGCTGCTCCAGCCG
GCGCGGTGGCCGCCTTAGCCGCTGTAACTCCACCTGCAGCCAGTGCAGTG
GACGAGGCTGACTGGCAGCCCGTGAACGGCGTGGACACGGATGTCGGCAA
CGAGGCGCTTGACGAGAGCGTCGTCGGACTCTTGTAGTAGCTATTCGAGG
GCTTTACATTGGCCTGCTCTGGATGAACTTCTGCCACAAGAGGTGCCAGG
TATTTGCCAATTGTGCTGGTGTTCGCCGATCCTCCGGCTAGGCTCGTGCT
GGACGACGTTGACGAGCTGCTGCAATGGCTGGTAGATACGTGCGTGGTCT
GGCTCGTATCCTGGTTTCCGTTTGTCGCAGAGCTATTCGTATTCGTGTTT
GCGTGGTGTTGGAAGCGTACTTTGCGCAGAGCCTGCGTTGTGGAGGAAGT
CTGCGCGTTCGCTCCGTTGGGCTCCGATTTGATGACCACCTTGTTGCTGG
ACTTGCTGGCACTGTTGTTGTTTATTGTGAGACTGTGATTGCTGTTTTGC
TGGCTTGCANGCTCCTTGCCATTGTTCGTCGAAAGTTTCGACTTGGACTC
CACTGGCGATTTGA
BO01619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9495-PA | 2634 | Scm-RA | 1828..2631 | 822..19 | 4020 | 100 | Minus |
CG9495-PA | 2634 | Scm-RA | 1736..1822 | 914..828 | 366 | 96.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scm-RB | 3767 | CG9495-RB | 2192..3087 | 914..19 | 4394 | 99.4 | Minus |
Scm-RA | 4069 | CG9495-RA | 2192..3087 | 914..19 | 4394 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9634536..9635297 | 153..914 | 3709 | 99.1 | Plus |
3R | 32079331 | 3R | 9634341..9634475 | 19..153 | 675 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2381 | 859..779 | 119 | 62.2 | Minus |
BO01619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:02 Download gff for
BO01619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-PA | 1737..2634 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:54 Download gff for
BO01619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9495-PA | 1737..2634 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:52 Download gff for
BO01619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 2189..3086 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:44 Download gff for
BO01619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 2193..3090 | 15..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:44 Download gff for
BO01619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9634337..9634475 | 15..153 | 98 | <- | Plus |
3R | 9634537..9635296 | 154..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:52 Download gff for
BO01619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5460059..5460197 | 15..153 | 98 | <- | Plus |
arm_3R | 5460259..5461018 | 154..913 | 99 | | Plus |
BO01619.5prime Sequence
877 bp (778 high quality bases) assembled on 2005-11-30
> BO01619.5prime
GAAGTTATCAGTCGACATGTCGGGCGGACGTGATAGCAGTACCAGTAGCG
GGAGCAATTCTGCTGCGCCAGGGGCCAGTACGAATGCCACCTCCTCCGCA
TCCGCATCCGCCTCCTCCACATCCACATCCGCATCCCCTGGAAGTACAAC
ATCGCCCGCGTCCACGCAACGGCAACGAGGTAGACCGGCCAAACGAGCCA
CATGCACCTGGTGCGGCGAGGGCAAGCTACCGCTGCAGTACGTCCTGCCC
ACGCAGACCGGCAAGAAGGAGTTCTGCTCGGAAACATGCATTGCCGAGTT
CCGCAAGGCGTACAGCAAGGGGGCGTGCACCCAGTGCGACAACGTCATCC
GCGATGGGGCGCCCAACAAGGAGTTCTGCTCGATCATGTGCATGAACAAG
CACCAGAAGAAGAACTGCTCGACCAGGCACAGCGGCGGATCGGCATCGGG
CAAGGGTCTGGCGGAAAGCGAGCGCAAGTTGCTGGCCAGTGGAGCGCCCG
CACCAACGGGGCCCTTTCAATACGAGAGCTTCCACGTCTTCGACTGGGAT
GCCTATCTAGAGGAAACGGGTAGCGAAGCTGCTCCTGCAAAATGTTTCAA
ACAGGCTCAGAATCCTCCCAACAATGATTTTAAAATCGGAATGAAGCTGG
AGGCTTTGGATCCGCGCAACGTCACTTCCACCTGCATTGCCACCGTGGTC
GGAGTGCTTGGCTCCAGACTGCGGCTACGCCTGGATGGAAGTGACTCCCA
GAATGACTTTTGGCGGCTGGTCGATTCTACGGAGATCCATGCTATTGGAC
ACTGTGAAAAGAACGGTGGCATGCTGCAGCCGCCTCTGGGATTCCGCATG
AACGCATCCAGCTGGCCGGGCTATCTG
BO01619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9495-PA | 2634 | Scm-RA | 1..861 | 17..877 | 4280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scm-RB | 3767 | CG9495-RB | 456..1317 | 16..877 | 4295 | 99.9 | Plus |
Scm-RA | 4069 | CG9495-RA | 456..1317 | 16..877 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9636609..9637156 | 563..16 | 2740 | 100 | Minus |
3R | 32079331 | 3R | 9636237..9636553 | 877..561 | 1570 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:54:20 has no hits.
BO01619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:03 Download gff for
BO01619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:55 Download gff for
BO01619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9495-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:57 Download gff for
BO01619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 452..1313 | 16..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:21 Download gff for
BO01619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 456..1317 | 16..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:21 Download gff for
BO01619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9636237..9636551 | 563..877 | 99 | <- | Minus |
3R | 9636610..9637156 | 16..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:57 Download gff for
BO01619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5461959..5462273 | 563..877 | 99 | <- | Minus |
arm_3R | 5462332..5462878 | 16..562 | 100 | | Minus |
BO01619.complete Sequence
2665 bp assembled on 2007-03-23
GenBank Submission: FJ629550
> BO01619.complete
GAAGTTATCAGTCGACATGTCGGGCGGACGTGATAGCAGTACCAGTAGCG
GGAGCAATTCTGCTGCGCCAGGGGCCAGTACGAATGCCACCTCCTCCGCA
TCCGCATCCGCCTCCTCCACATCCACATCCGCATCCCCTGGAAGTACAAC
ATCGCCCGCGTCCACGCAACGGCAACGAGGTAGACCGGCCAAACGAGCCA
CATGCACCTGGTGCGGCGAGGGCAAGCTACCGCTGCAGTACGTCCTGCCC
ACGCAGACCGGCAAGAAGGAGTTCTGCTCGGAAACATGCATTGCCGAGTT
CCGCAAGGCGTACAGCAAGGGGGCGTGCACCCAGTGCGACAACGTCATCC
GCGATGGGGCGCCCAACAAGGAGTTCTGCTCGATCATGTGCATGAACAAG
CACCAGAAGAAGAACTGCTCGACCAGGCACAGCGGCGGATCGGCATCGGG
CAAGGGTCTGGCGGAAAGCGAGCGCAAGTTGCTGGCCAGTGGAGCGCCCG
CACCAACGGGGCCCTTTCAATACGAGAGCTTCCACGTCTTCGACTGGGAT
GCCTATCTAGAGGAAACGGGTAGCGAAGCTGCTCCTGCAAAATGTTTCAA
ACAGGCTCAGAATCCTCCCAACAATGATTTTAAAATCGGAATGAAGCTGG
AGGCTTTGGATCCGCGCAACGTCACTTCCACCTGCATTGCCACCGTGGTC
GGAGTGCTTGGCTCCAGACTGCGGCTACGCCTGGATGGAAGTGACTCCCA
GAATGACTTTTGGCGGCTGGTCGATTCTACGGAGATCCATGCTATTGGAC
ACTGTGAAAAGAACGGTGGCATGCTGCAGCCGCCTCTGGGATTCCGCATG
AACGCATCCAGCTGGCCCGGCTATCTGTGCAAGATCCTCAACAATGCCAT
GGTGGCGCCAGAAGAGATCTTCCAGCCAGAGCCGCCAGAGCCAGAAGAAA
ACCTGTTCAAGGTGGGCCAGAAACTCGAGGCTGTCGACAAGAAGAACCCG
CAGCTCATCTGCTGTGCAACAGTAGATGCAATCAAGGATGATCAGATCCA
TGTAACATTCGATGGTTGGCGAGGGGCATTCGACTACTGGTGCAATTACC
GATCGCGTGACATTTTTCCCGCCGGCTGGTGCGCTAGAAGTTGTCATCCC
ATGCAGCCACCGGGCCATAAATCGCGCATGGACTCCAGCTCTAGCAAACA
GCGATGCCCTCGACCCCGCTACACTGTTGTAGCTGAGTCCGAGGCTATGG
TTCCCGCTTCCCCTGCCACAGCCCACTTCCATCCGAACTGCAAGGGCGGT
CCGTTCATCAACAATTCCAAACTGCCCTGCATGGTGACGGGACCCACCTA
CCAAACGCTGGCCAAGCTTTGCCTGCAGGAGGTTTTAGCTGCCAGCACGG
ATACGCAACAGCTCTCAAAGTTGCTGTTTGCCCTGGAAGGAGATGTTCAT
ATCGTGACGGCAGCGGGGAAAAATTTCACAGTAAAAATACCATCGCCAAT
GCGAATGAAGGATGACGAAAGCCTCGCCCAATTCATCGAAACGCTGTGCA
CTACATGCCGGGCATGTGCGAATCTCATTTCCTTGGTCCACGAGACGGAG
GAGTGCAAGAAGTGCGCCAATAGTCGGAAGCGTCAACTGACTCAGTCAGC
CACACCGCCTTCCTCGCCAGTGCTCGCCGACAAGCGAAACCGTCAATCCA
ACTCGGCAACGACATCACCCTCTGAGAAGATTATCAAGCAGGAATTGGCT
GTCAAATCGCCAGTGGAGTCCAAGTCGAAAACTTCGACGAACAATGGCAA
GGAGCCTGCAAGCCAGCAAAACAGCAATCACAGTCTCAACAATAACAACA
ACAGTGCCAGCAAGTCCAGCAACAAGGTGGTCATCAAATCGGAGCCCAAC
GGAGCGAACGCGCAGACTTCCTCCACAACGCAGGCTCTGCGCAAAGTACG
CTTCCAACACCACGCAAACACGAATACGAATAGCTCTGCGACAAACGGAA
ACCAGGATACGAGCCAGACCACGCACGTATCTACCAGCCATTGCAGCAGC
TCGTCAACGTCGTCCAGCACGAGCCTAGCCGGAGGATCGGCGAACACCAG
CACAATTGGCAAATACCTGGCACCTCTTGTGGCAGAAGTTCATCCAGAGC
AGGCCAATGTAAAGCCCTCGAATAGCTACTACAAGAGTCCGACGACGCTC
TCGTCAAGCGCCTCGTTGCCGACATCCGTGTCCACGCCGTTCACGGGCTG
CCAGTCAGCCTCGTCCACTGCACTGGCTGCAGGTGGAGTTACAGCGGCTA
AGGCGGCCACCGCGCCGGCTGGAGCAGCGGCAACTGCGGGAGCTTCTCCG
AGCTACACCGCGATTACCTCACCCGTGAGCACGCCCACTTCTGCTTTGGC
AAACTCACATCTGCGGTCGCAGCCGATCGACTGGACCATCGAAGAGGTGA
TCCAGTACATCGAGAGCAACGACAACTCCCTTGCAGTTCATGGTGATCTC
TTCCGAAAGCACGAAATCGATGGTAAAGCTTTATTATTGCTAAATTCAGA
GATGATGATGAAGTACATGGGCCTGAAGCTAGGACCAGCCTTAAAAATCT
GCAATTTAGTCAATAAGGTCAATGGTCGTCGAAATAATCTGGCACTCGCA
AGCTTTCTAGACCAT
BO01619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scm-RB | 2634 | CG9495-PB | 1..2631 | 17..2647 | 13155 | 100 | Plus |
Scm-RA | 2634 | CG9495-PA | 1..2631 | 17..2647 | 13155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scm-RB | 3767 | CG9495-RB | 456..3087 | 16..2647 | 13160 | 100 | Plus |
Scm-RA | 4069 | CG9495-RA | 456..3087 | 16..2647 | 13160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9634536..9635568 | 2513..1481 | 5165 | 100 | Minus |
3R | 32079331 | 3R | 9635632..9636553 | 1482..561 | 4610 | 100 | Minus |
3R | 32079331 | 3R | 9636609..9637156 | 563..16 | 2740 | 100 | Minus |
3R | 32079331 | 3R | 9634341..9634475 | 2647..2513 | 675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2902..2984 | 1790..1875 | 143 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2267..2381 | 1778..1887 | 139 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2423 | 1780..1875 | 126 | 66 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 484..548 | 1811..1875 | 118 | 64.6 | Plus |
BO01619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:39 Download gff for
BO01619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 1..2634 | 17..2651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:54 Download gff for
BO01619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 452..3086 | 16..2651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:15 Download gff for
BO01619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 453..3083 | 17..2649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:39 Download gff for
BO01619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 452..3086 | 16..2651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:58 Download gff for
BO01619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scm-RA | 457..3087 | 17..2649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:58 Download gff for
BO01619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9634339..9634475 | 2513..2649 | 98 | <- | Minus |
3R | 9634537..9635568 | 1481..2512 | 100 | <- | Minus |
3R | 9635634..9636551 | 563..1480 | 100 | <- | Minus |
3R | 9636610..9637155 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:15 Download gff for
BO01619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5460061..5460197 | 2513..2649 | 98 | <- | Minus |
arm_3R | 5460259..5461290 | 1481..2512 | 100 | <- | Minus |
arm_3R | 5461356..5462273 | 563..1480 | 100 | <- | Minus |
arm_3R | 5462332..5462877 | 17..562 | 100 | | Minus |
BO01619.pep Sequence
Translation from 16 to 2665
> BO01619.pep
MSGGRDSSTSSGSNSAAPGASTNATSSASASASSTSTSASPGSTTSPAST
QRQRGRPAKRATCTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYS
KGACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTRHSGGSASGKGLAE
SERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQAQNP
PNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWR
LVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEE
IFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDG
WRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRP
RYTVVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCMVTGPTYQTLAK
LCLQEVLAASTDTQQLSKLLFALEGDVHIVTAAGKNFTVKIPSPMRMKDD
ESLAQFIETLCTTCRACANLISLVHETEECKKCANSRKRQLTQSATPPSS
PVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESKSKTSTNNGKEPASQ
QNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKVRFQHHA
NTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKY
LAPLVAEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASS
TALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSALANSHLR
SQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKY
MGLKLGPALKICNLVNKVNGRRNNLALASFLDH
BO01619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scm-PB | 877 | CG9495-PB | 1..877 | 1..877 | 4588 | 100 | Plus |
Scm-PA | 877 | CG9495-PA | 1..877 | 1..877 | 4588 | 100 | Plus |
l(3)mbt-PB | 1477 | CG5954-PB | 747..1031 | 120..385 | 338 | 31.5 | Plus |
l(3)mbt-PB | 1477 | CG5954-PB | 926..1133 | 175..384 | 315 | 35.2 | Plus |
Sfmbt-PA | 868 | CG16975-PA | 444..639 | 203..401 | 277 | 33.3 | Plus |
Sfmbt-PD | 1220 | CG16975-PD | 796..991 | 203..401 | 277 | 33.3 | Plus |
Sfmbt-PA | 868 | CG16975-PA | 178..401 | 169..382 | 213 | 28.1 | Plus |
Sfmbt-PA | 868 | CG16975-PA | 304..525 | 176..387 | 188 | 29.5 | Plus |