Clone BO01619 Report

Search the DGRC for BO01619

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:16
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptScm-RA
Protein status:BO01619.pep: validated full length
Sequenced Size:2665

Clone Sequence Records

BO01619.3prime Sequence

914 bp (819 high quality bases) assembled on 2005-11-30

> BO01619.3prime
ATGGTCTAGAAAGCTTGCGAGTGCCAGATTATTTCGACGACCATTGACCT
TATTGACTAAATTGCAGATTTTTAAGGCTGGTCCTAGCTTCAGGCCCATG
TACTTCATCATCATCTCTGAATTTAGCAATAATAAAGCTTTACCATCGAT
TTCGTGCTTTCGGAAGAGATCACCATGAACTGCAAGGGAGTTGTCGTTGC
TCTCGATGTACTGGATCACCTCTTCGATGGTCCAGTCGATCGGCTGCGAC
CGCAGATGTGAGTTTGCCAAAGCAGAAGTGGGCGTGCTCACGGGTGAGGT
AATCGCGGTGTAGCTCGGAGAAGCTCCCGCAGTTGCCGCTGCTCCAGCCG
GCGCGGTGGCCGCCTTAGCCGCTGTAACTCCACCTGCAGCCAGTGCAGTG
GACGAGGCTGACTGGCAGCCCGTGAACGGCGTGGACACGGATGTCGGCAA
CGAGGCGCTTGACGAGAGCGTCGTCGGACTCTTGTAGTAGCTATTCGAGG
GCTTTACATTGGCCTGCTCTGGATGAACTTCTGCCACAAGAGGTGCCAGG
TATTTGCCAATTGTGCTGGTGTTCGCCGATCCTCCGGCTAGGCTCGTGCT
GGACGACGTTGACGAGCTGCTGCAATGGCTGGTAGATACGTGCGTGGTCT
GGCTCGTATCCTGGTTTCCGTTTGTCGCAGAGCTATTCGTATTCGTGTTT
GCGTGGTGTTGGAAGCGTACTTTGCGCAGAGCCTGCGTTGTGGAGGAAGT
CTGCGCGTTCGCTCCGTTGGGCTCCGATTTGATGACCACCTTGTTGCTGG
ACTTGCTGGCACTGTTGTTGTTTATTGTGAGACTGTGATTGCTGTTTTGC
TGGCTTGCANGCTCCTTGCCATTGTTCGTCGAAAGTTTCGACTTGGACTC
CACTGGCGATTTGA

BO01619.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9495-PA 2634 Scm-RA 1828..2631 822..19 4020 100 Minus
CG9495-PA 2634 Scm-RA 1736..1822 914..828 366 96.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Scm-RB 3767 CG9495-RB 2192..3087 914..19 4394 99.4 Minus
Scm-RA 4069 CG9495-RA 2192..3087 914..19 4394 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9634536..9635297 153..914 3709 99.1 Plus
3R 32079331 3R 9634341..9634475 19..153 675 100 Plus
Blast to na_te.dros performed 2015-02-12 16:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2381 859..779 119 62.2 Minus

BO01619.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:02 Download gff for BO01619.3prime
Subject Subject Range Query Range Percent Splice Strand
Scm-PA 1737..2634 15..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:54 Download gff for BO01619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9495-PA 1737..2634 15..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:24:52 Download gff for BO01619.3prime
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 2189..3086 15..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:21:44 Download gff for BO01619.3prime
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 2193..3090 15..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:21:44 Download gff for BO01619.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9634337..9634475 15..153 98 <- Plus
3R 9634537..9635296 154..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:24:52 Download gff for BO01619.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5460059..5460197 15..153 98 <- Plus
arm_3R 5460259..5461018 154..913 99   Plus

BO01619.5prime Sequence

877 bp (778 high quality bases) assembled on 2005-11-30

> BO01619.5prime
GAAGTTATCAGTCGACATGTCGGGCGGACGTGATAGCAGTACCAGTAGCG
GGAGCAATTCTGCTGCGCCAGGGGCCAGTACGAATGCCACCTCCTCCGCA
TCCGCATCCGCCTCCTCCACATCCACATCCGCATCCCCTGGAAGTACAAC
ATCGCCCGCGTCCACGCAACGGCAACGAGGTAGACCGGCCAAACGAGCCA
CATGCACCTGGTGCGGCGAGGGCAAGCTACCGCTGCAGTACGTCCTGCCC
ACGCAGACCGGCAAGAAGGAGTTCTGCTCGGAAACATGCATTGCCGAGTT
CCGCAAGGCGTACAGCAAGGGGGCGTGCACCCAGTGCGACAACGTCATCC
GCGATGGGGCGCCCAACAAGGAGTTCTGCTCGATCATGTGCATGAACAAG
CACCAGAAGAAGAACTGCTCGACCAGGCACAGCGGCGGATCGGCATCGGG
CAAGGGTCTGGCGGAAAGCGAGCGCAAGTTGCTGGCCAGTGGAGCGCCCG
CACCAACGGGGCCCTTTCAATACGAGAGCTTCCACGTCTTCGACTGGGAT
GCCTATCTAGAGGAAACGGGTAGCGAAGCTGCTCCTGCAAAATGTTTCAA
ACAGGCTCAGAATCCTCCCAACAATGATTTTAAAATCGGAATGAAGCTGG
AGGCTTTGGATCCGCGCAACGTCACTTCCACCTGCATTGCCACCGTGGTC
GGAGTGCTTGGCTCCAGACTGCGGCTACGCCTGGATGGAAGTGACTCCCA
GAATGACTTTTGGCGGCTGGTCGATTCTACGGAGATCCATGCTATTGGAC
ACTGTGAAAAGAACGGTGGCATGCTGCAGCCGCCTCTGGGATTCCGCATG
AACGCATCCAGCTGGCCGGGCTATCTG

BO01619.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9495-PA 2634 Scm-RA 1..861 17..877 4280 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Scm-RB 3767 CG9495-RB 456..1317 16..877 4295 99.9 Plus
Scm-RA 4069 CG9495-RA 456..1317 16..877 4295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9636609..9637156 563..16 2740 100 Minus
3R 32079331 3R 9636237..9636553 877..561 1570 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 15:54:20 has no hits.

BO01619.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:03 Download gff for BO01619.5prime
Subject Subject Range Query Range Percent Splice Strand
Scm-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:33:55 Download gff for BO01619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9495-PA 1..861 17..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:35:57 Download gff for BO01619.5prime
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 452..1313 16..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:21 Download gff for BO01619.5prime
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 456..1317 16..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:21 Download gff for BO01619.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9636237..9636551 563..877 99 <- Minus
3R 9636610..9637156 16..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:35:57 Download gff for BO01619.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5461959..5462273 563..877 99 <- Minus
arm_3R 5462332..5462878 16..562 100   Minus

BO01619.complete Sequence

2665 bp assembled on 2007-03-23

GenBank Submission: FJ629550

> BO01619.complete
GAAGTTATCAGTCGACATGTCGGGCGGACGTGATAGCAGTACCAGTAGCG
GGAGCAATTCTGCTGCGCCAGGGGCCAGTACGAATGCCACCTCCTCCGCA
TCCGCATCCGCCTCCTCCACATCCACATCCGCATCCCCTGGAAGTACAAC
ATCGCCCGCGTCCACGCAACGGCAACGAGGTAGACCGGCCAAACGAGCCA
CATGCACCTGGTGCGGCGAGGGCAAGCTACCGCTGCAGTACGTCCTGCCC
ACGCAGACCGGCAAGAAGGAGTTCTGCTCGGAAACATGCATTGCCGAGTT
CCGCAAGGCGTACAGCAAGGGGGCGTGCACCCAGTGCGACAACGTCATCC
GCGATGGGGCGCCCAACAAGGAGTTCTGCTCGATCATGTGCATGAACAAG
CACCAGAAGAAGAACTGCTCGACCAGGCACAGCGGCGGATCGGCATCGGG
CAAGGGTCTGGCGGAAAGCGAGCGCAAGTTGCTGGCCAGTGGAGCGCCCG
CACCAACGGGGCCCTTTCAATACGAGAGCTTCCACGTCTTCGACTGGGAT
GCCTATCTAGAGGAAACGGGTAGCGAAGCTGCTCCTGCAAAATGTTTCAA
ACAGGCTCAGAATCCTCCCAACAATGATTTTAAAATCGGAATGAAGCTGG
AGGCTTTGGATCCGCGCAACGTCACTTCCACCTGCATTGCCACCGTGGTC
GGAGTGCTTGGCTCCAGACTGCGGCTACGCCTGGATGGAAGTGACTCCCA
GAATGACTTTTGGCGGCTGGTCGATTCTACGGAGATCCATGCTATTGGAC
ACTGTGAAAAGAACGGTGGCATGCTGCAGCCGCCTCTGGGATTCCGCATG
AACGCATCCAGCTGGCCCGGCTATCTGTGCAAGATCCTCAACAATGCCAT
GGTGGCGCCAGAAGAGATCTTCCAGCCAGAGCCGCCAGAGCCAGAAGAAA
ACCTGTTCAAGGTGGGCCAGAAACTCGAGGCTGTCGACAAGAAGAACCCG
CAGCTCATCTGCTGTGCAACAGTAGATGCAATCAAGGATGATCAGATCCA
TGTAACATTCGATGGTTGGCGAGGGGCATTCGACTACTGGTGCAATTACC
GATCGCGTGACATTTTTCCCGCCGGCTGGTGCGCTAGAAGTTGTCATCCC
ATGCAGCCACCGGGCCATAAATCGCGCATGGACTCCAGCTCTAGCAAACA
GCGATGCCCTCGACCCCGCTACACTGTTGTAGCTGAGTCCGAGGCTATGG
TTCCCGCTTCCCCTGCCACAGCCCACTTCCATCCGAACTGCAAGGGCGGT
CCGTTCATCAACAATTCCAAACTGCCCTGCATGGTGACGGGACCCACCTA
CCAAACGCTGGCCAAGCTTTGCCTGCAGGAGGTTTTAGCTGCCAGCACGG
ATACGCAACAGCTCTCAAAGTTGCTGTTTGCCCTGGAAGGAGATGTTCAT
ATCGTGACGGCAGCGGGGAAAAATTTCACAGTAAAAATACCATCGCCAAT
GCGAATGAAGGATGACGAAAGCCTCGCCCAATTCATCGAAACGCTGTGCA
CTACATGCCGGGCATGTGCGAATCTCATTTCCTTGGTCCACGAGACGGAG
GAGTGCAAGAAGTGCGCCAATAGTCGGAAGCGTCAACTGACTCAGTCAGC
CACACCGCCTTCCTCGCCAGTGCTCGCCGACAAGCGAAACCGTCAATCCA
ACTCGGCAACGACATCACCCTCTGAGAAGATTATCAAGCAGGAATTGGCT
GTCAAATCGCCAGTGGAGTCCAAGTCGAAAACTTCGACGAACAATGGCAA
GGAGCCTGCAAGCCAGCAAAACAGCAATCACAGTCTCAACAATAACAACA
ACAGTGCCAGCAAGTCCAGCAACAAGGTGGTCATCAAATCGGAGCCCAAC
GGAGCGAACGCGCAGACTTCCTCCACAACGCAGGCTCTGCGCAAAGTACG
CTTCCAACACCACGCAAACACGAATACGAATAGCTCTGCGACAAACGGAA
ACCAGGATACGAGCCAGACCACGCACGTATCTACCAGCCATTGCAGCAGC
TCGTCAACGTCGTCCAGCACGAGCCTAGCCGGAGGATCGGCGAACACCAG
CACAATTGGCAAATACCTGGCACCTCTTGTGGCAGAAGTTCATCCAGAGC
AGGCCAATGTAAAGCCCTCGAATAGCTACTACAAGAGTCCGACGACGCTC
TCGTCAAGCGCCTCGTTGCCGACATCCGTGTCCACGCCGTTCACGGGCTG
CCAGTCAGCCTCGTCCACTGCACTGGCTGCAGGTGGAGTTACAGCGGCTA
AGGCGGCCACCGCGCCGGCTGGAGCAGCGGCAACTGCGGGAGCTTCTCCG
AGCTACACCGCGATTACCTCACCCGTGAGCACGCCCACTTCTGCTTTGGC
AAACTCACATCTGCGGTCGCAGCCGATCGACTGGACCATCGAAGAGGTGA
TCCAGTACATCGAGAGCAACGACAACTCCCTTGCAGTTCATGGTGATCTC
TTCCGAAAGCACGAAATCGATGGTAAAGCTTTATTATTGCTAAATTCAGA
GATGATGATGAAGTACATGGGCCTGAAGCTAGGACCAGCCTTAAAAATCT
GCAATTTAGTCAATAAGGTCAATGGTCGTCGAAATAATCTGGCACTCGCA
AGCTTTCTAGACCAT

BO01619.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Scm-RB 2634 CG9495-PB 1..2631 17..2647 13155 100 Plus
Scm-RA 2634 CG9495-PA 1..2631 17..2647 13155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Scm-RB 3767 CG9495-RB 456..3087 16..2647 13160 100 Plus
Scm-RA 4069 CG9495-RA 456..3087 16..2647 13160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9634536..9635568 2513..1481 5165 100 Minus
3R 32079331 3R 9635632..9636553 1482..561 4610 100 Minus
3R 32079331 3R 9636609..9637156 563..16 2740 100 Minus
3R 32079331 3R 9634341..9634475 2647..2513 675 100 Minus
Blast to na_te.dros performed 2014-11-27 07:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2902..2984 1790..1875 143 67.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2267..2381 1778..1887 139 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2423 1780..1875 126 66 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 484..548 1811..1875 118 64.6 Plus

BO01619.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:39 Download gff for BO01619.complete
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 1..2634 17..2651 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:54 Download gff for BO01619.complete
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 452..3086 16..2651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:15 Download gff for BO01619.complete
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 453..3083 17..2649 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:39 Download gff for BO01619.complete
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 452..3086 16..2651 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:58 Download gff for BO01619.complete
Subject Subject Range Query Range Percent Splice Strand
Scm-RA 457..3087 17..2649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:58 Download gff for BO01619.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9634339..9634475 2513..2649 98 <- Minus
3R 9634537..9635568 1481..2512 100 <- Minus
3R 9635634..9636551 563..1480 100 <- Minus
3R 9636610..9637155 17..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:15 Download gff for BO01619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5460061..5460197 2513..2649 98 <- Minus
arm_3R 5460259..5461290 1481..2512 100 <- Minus
arm_3R 5461356..5462273 563..1480 100 <- Minus
arm_3R 5462332..5462877 17..562 100   Minus

BO01619.pep Sequence

Translation from 16 to 2665

> BO01619.pep
MSGGRDSSTSSGSNSAAPGASTNATSSASASASSTSTSASPGSTTSPAST
QRQRGRPAKRATCTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYS
KGACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTRHSGGSASGKGLAE
SERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQAQNP
PNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWR
LVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEE
IFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDG
WRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRP
RYTVVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCMVTGPTYQTLAK
LCLQEVLAASTDTQQLSKLLFALEGDVHIVTAAGKNFTVKIPSPMRMKDD
ESLAQFIETLCTTCRACANLISLVHETEECKKCANSRKRQLTQSATPPSS
PVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESKSKTSTNNGKEPASQ
QNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKVRFQHHA
NTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKY
LAPLVAEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASS
TALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSALANSHLR
SQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKY
MGLKLGPALKICNLVNKVNGRRNNLALASFLDH

BO01619.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
Scm-PB 877 CG9495-PB 1..877 1..877 4588 100 Plus
Scm-PA 877 CG9495-PA 1..877 1..877 4588 100 Plus
l(3)mbt-PB 1477 CG5954-PB 747..1031 120..385 338 31.5 Plus
l(3)mbt-PB 1477 CG5954-PB 926..1133 175..384 315 35.2 Plus
Sfmbt-PA 868 CG16975-PA 444..639 203..401 277 33.3 Plus
Sfmbt-PD 1220 CG16975-PD 796..991 203..401 277 33.3 Plus
Sfmbt-PA 868 CG16975-PA 178..401 169..382 213 28.1 Plus
Sfmbt-PA 868 CG16975-PA 304..525 176..387 188 29.5 Plus