Clone Sequence Records
BO01626.3prime Sequence
824 bp (741 high quality bases) assembled on 2005-11-30
> BO01626.3prime
ATGGTCTAGAAAGCTTGCATTGTGGACTGGCATGGGCAGCTGGCCGAGCA
GATTGTTGGCGAACTGCGAGTTGGTGAACTTAAAGTGCCGCTTGTCGTAG
AACTTAAGCAGCGCCGGCGAGAACGGATGGTTGTTCTTCAGGTGCAGATA
GTGGACCTCCGGCTCGCAGGTGGTGTGTCCGCACTCCTCGCACACGTACA
TCTTGGCTCTGCGCTCCTTGTAGGCATACTGGTGCTGAACGCTATGCACC
TTCTGGCAGTGCGACTCGAGGGAACAGCGCTGCGTGAAGCTCTTCTCGCA
GAGATTGCACTTGTACGGCCGGACGCCCGTGTGGGTGCGCGTGTGGCGCT
TGAGGTCGAAGGTGTCGTTGAATCCCTTGCCGCAGAACGTGCACAGATAC
CGCTTGATGTCCGAGTGACACTTCATGTGCCGATTGAGCAGGCGCTGCAG
CGAGAATGTCTTCATGCAGACGCGGCAGACGAACTTATTGTTGCCCGACG
ACGAATCCTCATTGGCTCCGCCGGATGAGCCCATGCAAAGGGCTTCGGCG
GATCCATGACTGCTGGCATTGCTGCTTGCACTGCTGTTACTGTGGTGCTG
ATGGTGCTGCTGCTGCTGTTGCTGCTGCAGGGATTGCTGCTGTTGCACCG
ACTGCTGTTGCACCGATTGTTGCATATTTTGCTGCTGCGGCGAGCCCTGC
TGCTGTTGGTGCTGCGAGTGGTGGCCATGCTTGCTGAGATCATNNCATGC
ATCGATGTTGCGAATTCNGTGATGGCCACCGTGGGCATTCTCCCACGCCA
GCGGGTTCTTAATGCCATGGCCGC
BO01626.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6824-PA | 2928 | ovo-RA | 2201..2925 | 743..19 | 3625 | 100 | Minus |
CG6824-PB | 4056 | ovo-RB | 3329..4053 | 743..19 | 3625 | 100 | Minus |
CG6824-PC | 3669 | ovo-RC | 2942..3666 | 743..19 | 3625 | 100 | Minus |
CG6824-PD | 3087 | ovo-RD | 2360..3084 | 743..19 | 3625 | 100 | Minus |
CG6824-PA | 2928 | ovo-RA | 2151..2193 | 793..751 | 196 | 97.6 | Minus |
CG6824-PB | 4056 | ovo-RB | 3279..3321 | 793..751 | 196 | 97.6 | Minus |
CG6824-PC | 3669 | ovo-RC | 2892..2934 | 793..751 | 196 | 97.6 | Minus |
CG6824-PD | 3087 | ovo-RD | 2310..2352 | 793..751 | 196 | 97.6 | Minus |
CG6824-PA | 2928 | ovo-RA | 2120..2147 | 824..797 | 140 | 100 | Minus |
CG6824-PB | 4056 | ovo-RB | 3248..3275 | 824..797 | 140 | 100 | Minus |
CG6824-PC | 3669 | ovo-RC | 2861..2888 | 824..797 | 140 | 100 | Minus |
CG6824-PD | 3087 | ovo-RD | 2279..2306 | 824..797 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ovo-RE | 6763 | CG6824-RE | 4106..4911 | 824..19 | 3907 | 99.1 | Minus |
ovo-RD | 5948 | CG6824-RD | 3448..4253 | 824..19 | 3907 | 99.1 | Minus |
ovo-RC | 5518 | CG6824-RC | 2861..3666 | 824..19 | 3907 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5068176..5068798 | 824..202 | 2962 | 98.2 | Minus |
X | 23542271 | X | 5068893..5069077 | 203..19 | 925 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 14:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6900 | 736..561 | 339 | 69.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6867 | 710..561 | 304 | 68.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2511 | 723..542 | 266 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6915 | 736..582 | 265 | 66.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2966 | 736..560 | 264 | 64.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2512 | 736..561 | 256 | 62.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2461 | 715..570 | 247 | 66 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6921 | 736..593 | 231 | 63.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2922 | 736..562 | 211 | 64.6 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 628..737 | 618..728 | 211 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2535 | 737..583 | 207 | 62.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6977 | 736..575 | 199 | 60.4 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1165 | 723..619 | 176 | 64.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7003 | 731..576 | 145 | 56.3 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 948..1006 | 737..677 | 129 | 70.5 | Minus |
BO01626.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:07 Download gff for
BO01626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6824-PA | 2120..2928 | 18..824 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:34:01 Download gff for
BO01626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6824-PA | 2120..2928 | 18..824 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:58:03 Download gff for
BO01626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RC | 2861..3671 | 11..824 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:38:30 Download gff for
BO01626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RC | 2861..3671 | 11..824 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:38:30 Download gff for
BO01626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5068176..5068798 | 202..824 | 98 | -> | Minus |
X | 5068895..5069082 | 11..201 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:58:03 Download gff for
BO01626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4962209..4962831 | 202..824 | 98 | -> | Minus |
arm_X | 4962928..4963115 | 11..201 | 97 | | Minus |
BO01626.5prime Sequence
761 bp (728 high quality bases) assembled on 2005-11-30
> BO01626.5prime
GAAGTTATCAGTCGACATGGGCGGTGGTCGCGACGGCCGAGGGAACTACG
GACCCAATTCACCGCCAACGGGAGCATTGCCTCCGTTTTATGAGAGCCTC
AAGAGCGGCCAACAGAGCACGGCCAGCAACAATACGGGCCAAAGTCCCGG
CGCTAATCATTCGCATTTCAACGCAAATCCAGCGAATTTTCTGCAAAACG
CAGCAGCGGCTGCGTACATCATGTCGGCAGGTTCCGGTGGAGGAGGCTGC
ACCGGAAACGGAGGTGGTGGAGCATCGGGGCCAGGAGGTGGCCCATCGGC
AAATAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCAATGGGTACATCAACT
GTGGTGGTGTTGGTGGTCCAAACAATAGTCTCGACGCCTACGGCATAATA
CTCAAGGATGAACCGGACATTGAGTACGACGAGGCCAAGATCGATATTGG
CACCTTTGCGCAGAACATTATCCAGGCAACGATGGGCAGCTCCGGTCAGT
TCAATGCCAGCGCCTATGAGGATGCTATAATGTCGGACCTGGCCAGTTCG
GGTCAGTGTCCCAATGGAGCCGTCGATCCGCTTCAGTTCACAGCCACTCT
GATGCTGAGTTCGCAGACCGATCATTTACTGGAGCAGCTGTCCGATGCCG
TGGACTTGAGTTCATTCCTGCAAAGGAGCTGCGTGGACGACGAGGAGTCC
ACCAGTCCGCGGCAGGATTTCGAGCTGGTGTCCACGCCCTCGCTAACGCC
GGATTCAGTGA
BO01626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6824-PA | 2928 | ovo-RA | 1..745 | 17..761 | 3725 | 100 | Plus |
CG6824-PB | 4056 | ovo-RB | 2032..2407 | 386..761 | 1880 | 100 | Plus |
CG6824-PC | 3669 | ovo-RC | 1645..2020 | 386..761 | 1880 | 100 | Plus |
CG6824-PD | 3087 | ovo-RD | 529..904 | 386..761 | 1880 | 100 | Plus |
CG6824-PB | 4056 | ovo-RB | 1504..1873 | 17..386 | 1850 | 100 | Plus |
CG6824-PC | 3669 | ovo-RC | 1117..1486 | 17..386 | 1850 | 100 | Plus |
CG6824-PD | 3087 | ovo-RD | 1..370 | 17..386 | 1850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ovo-RA | 5946 | CG6824-RA | 1170..1914 | 17..761 | 3725 | 100 | Plus |
ovo-RE | 6763 | CG6824-RE | 2890..3265 | 386..761 | 1880 | 100 | Plus |
ovo-RD | 5948 | CG6824-RD | 1698..2073 | 386..761 | 1880 | 100 | Plus |
ovo-RE | 6763 | CG6824-RE | 2362..2731 | 17..386 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5066072..5066447 | 386..761 | 1880 | 100 | Plus |
X | 23542271 | X | 5065544..5065913 | 17..386 | 1850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:04:10 has no hits.
BO01626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:07 Download gff for
BO01626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6824-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:34:03 Download gff for
BO01626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6824-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:36 Download gff for
BO01626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RA | 1165..1913 | 11..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:17 Download gff for
BO01626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RA | 1165..1913 | 11..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:17 Download gff for
BO01626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5066073..5066446 | 387..760 | 100 | | Plus |
X | 5065539..5065913 | 11..386 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:36 Download gff for
BO01626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4959572..4959946 | 11..386 | 99 | -> | Plus |
arm_X | 4960106..4960479 | 387..760 | 100 | | Plus |
BO01626.complete Sequence
2959 bp assembled on 2006-11-03
GenBank Submission: FJ629551
> BO01626.complete
GAAGTTATCAGTCGACATGGGCGGTGGTCGCGACGGCCGAGGGAACTACG
GACCCAATTCACCGCCAACGGGAGCATTGCCTCCGTTTTATGAGAGCCTC
AAGAGCGGCCAACAGAGCACGGCCAGCAACAATACGGGCCAAAGTCCCGG
CGCTAATCATTCGCATTTCAACGCAAATCCAGCGAATTTTCTGCAAAACG
CAGCAGCGGCTGCGTACATCATGTCGGCAGGTTCCGGTGGAGGAGGCTGC
ACCGGAAACGGAGGTGGTGGAGCATCGGGGCCAGGAGGTGGCCCATCGGC
AAATAGTGGTGGTGGTGGTGGTGGTGGCGGCGGCAATGGGTACATCAACT
GTGGTGGTGTTGGTGGTCCAAACAATAGTCTCGACGCCTACGGCATAATA
CTCAAGGATGAACCGGACATTGAGTACGACGAGGCCAAGATCGATATTGG
CACCTTTGCGCAGAACATTATCCAGGCAACGATGGGCAGCTCCGGTCAGT
TCAATGCCAGCGCCTATGAGGATGCTATAATGTCGGACCTGGCCAGTTCG
GGTCAGTGTCCCAATGGAGCCGTCGATCCGCTTCAGTTCACAGCCACTCT
GATGCTGAGTTCGCAGACCGATCATTTACTGGAGCAGCTGTCCGATGCCG
TGGACTTGAGTTCATTCCTGCAAAGGAGCTGCGTGGACGACGAGGAGTCC
ACCAGTCCGCGGCAGGATTTCGAGCTGGTGTCCACGCCCTCGCTAACGCC
GGATTCAGTGACGCCGGTGGAGCAGCACAATACCAATACAACCCAGCTGG
ATGTCCTGCACGAGAATCTGTTGACGCAGCTGACCCACAATATAGTCCGG
GGCGGCAGCAATCAGCAGCAGCAGCACCATCAACAGCATGGTGTGCAGCA
GCAACAGCAGCAGCAGCATAGTGTGCAGCAGCAACAGCAGCACAATGTGC
AACAGCAGCATGGCGTGCAGCAGCAACATGTCCAGCAGCAACCACCGCCC
TCGTATCAGCATGCCACGCGTGGCCTGATGATGCAACAGCAGCCGCAGCA
CGGCGGCTATCAGCAGCAAGCTGCCATCATGTCGCAACAGCAGCAGCAAT
TGCTCAGCCAGCAGCAGCAGCAGTCGCACCACCAGCAGCAGCAGCAGCAG
CAACATGCCGCTGCCTACCAGCAGCACAACATCTATGCACAGCAGCAACA
GCAGCAGCAGCAGCAGCATCATCAACAGCAGCAACAGCAGCAACATCATC
ACTTCCACCACCAGCAACAACAGCAGCCACAGCCACAGTCGCATCATTCG
CACCATCATGGCCATGGTCATGACAACAGCAACATGTCGCTTCCCTCGCC
AACTGCGGCTGCAGCGGCGGCGGCCGCTGCTGCTGCTGCTGCGGCAGCCG
CAGCCGCTCATCTGCAGCGTCCGATGAGCAGCAGCAGCAGCTCCGGCGGC
ACCAATAGCAGCAACAGTAGCGGTGGCAGCAGCAACAGTCCGCTCCTAGA
TGCAAACGCTGCTGCGGCAGCTGCAGCTGCTTTGTTGGACACAAAGCCAC
TCATCCAAAGCGTAAGTAATCCAATTGGTCAGCCACTAAATACGCAATCA
CAGCAGCAAAAGCAGGGACAACAAATCACATTGATGAAGACCACTAGGTA
CACGGAATTCGTCGAGATGGTGTCCATGGACGTGACGGTCAAGCCAGAGC
TCTTTAGCGAGCTCAAGCCAGAAATGACCGAGATCACCGCCGAGGAGTTG
ACTTTGGAAGCAGAGACAACAGCAGCAGCGGCGGCAGCAGCAGCAGCAGC
AGCAGCTGCAACAACAACATCAGCAACAGAGGGAACTCAGGTTCTGGCAG
CAGCGCCGGCACCATTGTCATCCGGCAGAAAGCTGCGTGGACGCGCCAAG
GCTGTAGCCTATGGCTCCACAATGATTACGCTGATATCCACGCTGAAATC
GTCGCCAGAAGTGCCGGCCACCAAGACGGTGCACCGCACCACTTTGCGAT
CTTTGGCTACGGCGGCAGCGGCCACTGCAGCCGGTTTGCTGGCGCCATCG
CCCACCGTTTCCGTTTTGAATGAGAGCAAAGTCTTGCAGCGGCGCTTGGG
CTTGCCGCCGGATCTGCAGCTTGAGTTTGTGAACGGCGGCCATGGCATTA
AGAACCCGCTGGCCGTGGAGAATGCCCACGGTGGCCATCACCGAATTCGC
AACATCGATTGCATTGATGATCTCAGCAAGCATGGCCACCACTCGCAGCA
CCAACAGCAGCAGGGCTCGCCGCAGCAGCAAAATATGCAACAATCGGTGC
AACAGCAGTCGGTGCAACAGCAGCAATCCCTGCAGCAGCAACAGCAGCAG
CAGCACCATCAGCACCACAGTAACAGCAGTGCAAGCAGCAATGCCAGCAG
TCATGGATCCGCCGAAGCCCTTTGCATGGGCTCATCCGGCGGAGCCAATG
AGGATTCGTCGTCGGGCAACAATAAGTTCGTCTGCCGCGTCTGCATGAAG
ACATTCTCGCTGCAGCGCCTGCTCAATCGGCACATGAAGTGTCACTCGGA
CATCAAGCGGTATCTGTGCACGTTCTGCGGCAAGGGATTCAACGACACCT
TCGACCTCAAGCGCCACACGCGCACCCACACGGGCGTCCGGCCGTACAAG
TGCAATCTCTGCGAGAAGAGCTTCACGCAGCGCTGTTCCCTCGAGTCGCA
CTGCCAGAAGGTGCATAGCGTTCAGCACCAGTATGCCTACAAGGAGCGCA
GAGCCAAGATGTACGTGTGCGAGGAGTGCGGACACACCACCTGCGAGCCG
GAGGTCCACTATCTGCACCTGAAGAACAACCATCCGTTCTCGCCGGCGCT
GCTTAAGTTCTACGACAAGCGGCACTTTAAGTTCACCAACTCGCAGTTCG
CCAACAATCTGCTCGGCCAGCTGCCCATGCCAGTCCACAATGCAAGCTTT
CTAGACCAT
BO01626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ovo-RA | 2928 | CG6824-PA | 1..2925 | 17..2941 | 14625 | 100 | Plus |
ovo-RD | 3087 | CG6824-PD | 529..3084 | 386..2941 | 12780 | 100 | Plus |
ovo-RE | 4056 | CG6824-PE | 2032..3207 | 386..1561 | 5880 | 100 | Plus |
ovo-RD | 3087 | CG6824-PD | 1..370 | 17..386 | 1850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ovo-RA | 5946 | CG6824-RA | 1170..4094 | 17..2941 | 14625 | 100 | Plus |
ovo-RD | 5948 | CG6824-RD | 1698..4253 | 386..2941 | 12780 | 100 | Plus |
ovo-RE | 6763 | CG6824-RE | 2890..4065 | 386..1561 | 5880 | 100 | Plus |
ovo-RD | 5948 | CG6824-RD | 1170..1539 | 17..386 | 1850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5066072..5067781 | 386..2095 | 8550 | 100 | Plus |
X | 23542271 | X | 5068136..5068798 | 2096..2758 | 3315 | 100 | Plus |
X | 23542271 | X | 5065544..5065913 | 17..386 | 1850 | 100 | Plus |
X | 23542271 | X | 5068893..5069077 | 2757..2941 | 925 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2272..2539 | 1004..1293 | 431 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2965 | 1033..1623 | 349 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6900 | 2224..2399 | 339 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7219 | 968..1469 | 322 | 57.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..3012 | 856..1261 | 316 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6867 | 2250..2399 | 304 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2511 | 2237..2418 | 266 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6915 | 2224..2378 | 265 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2966 | 2224..2400 | 264 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2512 | 2224..2399 | 256 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2384 | 1757..1829 | 248 | 82.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2461 | 2245..2390 | 247 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6921 | 2224..2367 | 231 | 63.2 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 628..737 | 2342..2232 | 211 | 70.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2375..2535 | 2223..2377 | 207 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6977 | 2224..2385 | 199 | 60.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1165 | 2237..2341 | 176 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..7003 | 2229..2384 | 145 | 56.3 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 948..1006 | 2223..2283 | 129 | 70.5 | Plus |
BO01626.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:32 Download gff for
BO01626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RA | 1..2928 | 17..2942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:14 Download gff for
BO01626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RA | 1165..4099 | 11..2949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:30 Download gff for
BO01626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RA | 1170..4094 | 17..2943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:32 Download gff for
BO01626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RA | 1165..4099 | 11..2949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:21 Download gff for
BO01626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ovo-RA | 1170..4094 | 17..2943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:21 Download gff for
BO01626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5065544..5065913 | 17..386 | 100 | -> | Plus |
X | 5066073..5067781 | 387..2095 | 100 | -> | Plus |
X | 5068136..5068798 | 2096..2758 | 100 | -> | Plus |
X | 5068895..5069077 | 2759..2943 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:30 Download gff for
BO01626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4959577..4959946 | 17..386 | 100 | -> | Plus |
arm_X | 4960106..4961814 | 387..2095 | 100 | -> | Plus |
arm_X | 4962169..4962831 | 2096..2758 | 100 | -> | Plus |
arm_X | 4962928..4963110 | 2759..2943 | 98 | | Plus |
BO01626.pep Sequence
Translation from 16 to 2959
> BO01626.pep
MGGGRDGRGNYGPNSPPTGALPPFYESLKSGQQSTASNNTGQSPGANHSH
FNANPANFLQNAAAAAYIMSAGSGGGGCTGNGGGGASGPGGGPSANSGGG
GGGGGGNGYINCGGVGGPNNSLDAYGIILKDEPDIEYDEAKIDIGTFAQN
IIQATMGSSGQFNASAYEDAIMSDLASSGQCPNGAVDPLQFTATLMLSSQ
TDHLLEQLSDAVDLSSFLQRSCVDDEESTSPRQDFELVSTPSLTPDSVTP
VEQHNTNTTQLDVLHENLLTQLTHNIVRGGSNQQQQHHQQHGVQQQQQQQ
HSVQQQQQHNVQQQHGVQQQHVQQQPPPSYQHATRGLMMQQQPQHGGYQQ
QAAIMSQQQQQLLSQQQQQSHHQQQQQQQHAAAYQQHNIYAQQQQQQQQQ
HHQQQQQQQHHHFHHQQQQQPQPQSHHSHHHGHGHDNSNMSLPSPTAAAA
AAAAAAAAAAAAAAHLQRPMSSSSSSGGTNSSNSSGGSSNSPLLDANAAA
AAAAALLDTKPLIQSVSNPIGQPLNTQSQQQKQGQQITLMKTTRYTEFVE
MVSMDVTVKPELFSELKPEMTEITAEELTLEAETTAAAAAAAAAAAAATT
TSATEGTQVLAAAPAPLSSGRKLRGRAKAVAYGSTMITLISTLKSSPEVP
ATKTVHRTTLRSLATAAAATAAGLLAPSPTVSVLNESKVLQRRLGLPPDL
QLEFVNGGHGIKNPLAVENAHGGHHRIRNIDCIDDLSKHGHHSQHQQQQG
SPQQQNMQQSVQQQSVQQQQSLQQQQQQQHHQHHSNSSASSNASSHGSAE
ALCMGSSGGANEDSSSGNNKFVCRVCMKTFSLQRLLNRHMKCHSDIKRYL
CTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCQKVH
SVQHQYAYKERRAKMYVCEECGHTTCEPEVHYLHLKNNHPFSPALLKFYD
KRHFKFTNSQFANNLLGQLPMPVHNASFLDH
BO01626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ovo-PA | 975 | CG6824-PA | 1..975 | 1..975 | 5124 | 100 | Plus |
ovo-PD | 1028 | CG6824-PD | 1..1028 | 1..975 | 5060 | 94.8 | Plus |
ovo-PE | 1351 | CG6824-PE | 502..1073 | 1..519 | 2657 | 90.2 | Plus |
ovo-PC | 1222 | CG6824-PC | 373..944 | 1..519 | 2657 | 90.2 | Plus |
ovo-PB | 1351 | CG6824-PB | 502..1073 | 1..519 | 2657 | 90.2 | Plus |
ovo-PE | 1351 | CG6824-PE | 828..1351 | 387..975 | 1648 | 60.4 | Plus |
ovo-PC | 1222 | CG6824-PC | 699..1222 | 387..975 | 1648 | 60.4 | Plus |