Clone BO01629 Report

Search the DGRC for BO01629

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:16
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptstwl-RA
Protein status:BO01629.pep: validated full length
Sequenced Size:3145

Clone Sequence Records

BO01629.3prime Sequence

861 bp (766 high quality bases) assembled on 2005-11-30

> BO01629.3prime
ATGGTCTAGAAAGCTTGCAACACCGAGTATGTCATTGTGATCCTCCGCGG
GATCCACTGGCTCTCGCTTAAGGTTGTCCAGCGAAAAATCATCCGCAGCA
ATAGTGGCTGCTGTCTCCGAGGATTCAATTTTATTTCTCTGCACCGTCTG
ACTGGCCTGCTGAAGAAGGTCCTGAAAGGAGGTTTTGGTATTAGCCACCA
CCAAGCTGCGCTTCAGCGCCGAGGTAGGCGAACTTTCTTCGCCGTTTACA
GAGGCCGTTGCAGCGGGCTTGGGCTGGGCAAAGTCATTGAAGGCAGATCC
TTGCACACTGGCAATCTGCGGAGTTTTCTGAAGCAGGGAGGCACCGCCAG
TGGGTGAGATTTGCTTTTGGTAAGCAGGAACGCAGCCCACAGACTTCCTC
ACTAGTAAACTGCTGCCTTGCGATGCAGTGGTCATTTGACTAGCACCTAC
GGCAGAATACCGAGGGCGTTGGGTAGGTGGCACCATTCCATGCCCAGCTG
CTATCAATCGCCGCTTAAGCATAGACGCTTCCATAGCGCTAGCATTGGAG
TTTATGGTGCTGCCATTGGCGGAACCTTGGCTAGCGTTTTGGGCATTGGG
TGGATTGCTGCTACCGCACACGGAATACCTCCTGGACATGGCGCGGATAT
TCTCGGAGGCAGCTCCCTTGGCCGTCGTCGGTCCATTGCCTTGTCCAAAG
AAACTGTTGATCAATGAACCCTGCGGCCTTATAGCAGCCACTACAGCAGC
TCCTTTGGGACTGCCTGTTGGGGCGTGGTTGGCCACCTTGACCACACTAT
GGTTACTGTCAACACTATCCTTGCGCAAAATTTCCTGAGTGGCACTCAAG
TTGCCATTTCG

BO01629.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3836-PA 3114 stwl-RA 2272..3111 858..19 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
stwl-RC 4233 CG3836-RC 2449..3288 858..19 4200 100 Minus
stwl-RB 3429 CG3836-RB 2225..3064 858..19 4200 100 Minus
stwl-RA 3653 CG3836-RA 2449..3288 858..19 4200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14403875..14404714 19..858 4200 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:54:35 has no hits.

BO01629.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:12 Download gff for BO01629.3prime
Subject Subject Range Query Range Percent Splice Strand
stwl-PA 2270..3114 15..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:34:10 Download gff for BO01629.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3836-PA 2270..3114 15..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:56 Download gff for BO01629.3prime
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 2447..3292 14..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:48:27 Download gff for BO01629.3prime
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 2447..3292 14..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:48:27 Download gff for BO01629.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14403871..14404716 14..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:56 Download gff for BO01629.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14396971..14397816 14..861 99   Plus

BO01629.5prime Sequence

765 bp (734 high quality bases) assembled on 2005-11-30

> BO01629.5prime
GAAGTTATCAGTCGACATGAGCGCCGCCTCTGAGGTGAACCTGATGTTGC
TGCGGTCAGTGGAGAAGCAGACTGCGCTTTATGATCGTACCGACGAAAAC
TATAGGAAGCGCCTGCCGAGTGAGAACGCCTGGGACATGGTTGCCTCCGA
AGTTGGAGAGTCGGTGGAAAAATGCAAGCGACGCTGGCGTCAGCTGCGAA
ATGACTATACCCGCTGGTGCAACGCCGACGCCAACCGGCGACGAAATGGC
CAGCGTCGTTTGGCTTATCCGCTGGCCGATGAGCTGCGCTTTTTGGACCG
CCATCTAAACATAGCTGACGACATGGCTGCCGACGATGACCGCAGCGTAT
CATCGGACAAGGACAGGGATAACAATAGAGACAGCGAGGGCGTGGATCAT
CATGCTCAGGCGTCATTAAAAGAACGCGCATCATCGACAAGCAAGTTAGT
TAAGGAGGTCAAGCTGGCAAGTCAAGTTCGTAAGGAAAAATCGTCCCAAG
ACAAGAGAGAAAATTGGGAAAATCCTGGAGATAAACAGCGATCTAGGAAG
AAAAGTGCTGAAGAGAAGCTGAATGATTTGGAGGAATCGGACGAACCAGA
GAAGGTTCCTGAACTCGATAGTTTTCTGCAGTCTGATAATGAAGACGACG
AGTGCATGGACGAGGAGCACCTAGAAGATCTGGAAGGTTTCGATTTTGAC
TTGGAAACATCGAATCAGGAAAAGGAGTTAACGCCGGAGAAGTCTCTAGA
GAAGAATAACACCGA

BO01629.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3836-PA 3114 stwl-RA 1..749 17..765 3695 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
stwl-RC 4233 CG3836-RC 178..926 17..765 3715 99.7 Plus
stwl-RA 3653 CG3836-RA 178..926 17..765 3715 99.7 Plus
stwl-RB 3429 CG3836-RB 102..702 165..765 2975 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14406237..14406838 765..164 2980 99.7 Minus
3L 28110227 3L 14409615..14409762 164..17 740 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:54:48 has no hits.

BO01629.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:34:13 Download gff for BO01629.5prime
Subject Subject Range Query Range Percent Splice Strand
stwl-PA 1..748 17..764 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:34:11 Download gff for BO01629.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3836-PA 1..748 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:18:58 Download gff for BO01629.5prime
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 174..925 10..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:13 Download gff for BO01629.5prime
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 174..925 10..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:13 Download gff for BO01629.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14406238..14406837 165..764 99 <- Minus
3L 14409615..14409766 10..164 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:18:58 Download gff for BO01629.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14399338..14399937 165..764 99 <- Minus
arm_3L 14402715..14402866 10..164 98   Minus

BO01629.complete Sequence

3145 bp assembled on 2007-08-10

GenBank Submission: FJ629553

> BO01629.complete
GAAGTTATCAGTCGACATGAGCGCCGCCTCTGAGGTGAACCTGATGTTGC
TGCGGTCAGTGGAGAAGCAGACTGCGCTTTATGATCGTACCGACGAAAAC
TATAGGAAGCGCCTGCCGAGTGAGAACGCCTGGGACATGGTTGCCTCCGA
AGTTGGAGAGTCGGTGGAAAAATGCAAGCGACGCTGGCGTCAGCTGCGAA
ATGACTATACCCGCTGGTGCAACGCCGACGCCAACCGGCGACGAAATGGC
CAGCGTCGTTTGGCTTATCCGCTGGCCGATGAGCTGCGCTTTTTGGACCG
CCATCTAAACATAGCTGACGACATGGCTGCCGACGATGACCGCAGCGTAT
CATCGGACAAGGACAGGGATAACAATAGAGACAGCGAGGGCGTGGATCAT
CATGCTCAGGCGTCATTAAAAGAACGCGCATCATCGACAAGCAAGTTAGT
TAAGGAGGTCAAGCTGGCAAGTCAAGTTCGTAAGGAAAAATCGTCCCAAG
ACAAGAGAGAAAATTGGGAAAATCCTGGAGATAAACAGCGATCTAGGAAG
AAAAGTGCTGAAGAGAAGCTGAATGATTTGGAGGAATCGGACGAACCAGA
GAAGGTTCCTGAACTCGATAGTTTTCTGCAGTCTGATAATGAAGACGACG
AGTGCATGGACGAGGAGCACCTAGAAGATCTGGAAGGTTTCGATTTTGAC
TTGGAACAATCGAATCAGGAAAAGGAGTTAACGCCGGAGAAGTCTCTAGA
GAAGAATAACACCGACTCAACTGTTAGCCAGCCGGAGTTCTTTGTCAAGC
AAACCAGAGATCCTCGTTTGCTAATTATTGGCAGAAAGAATTCGACGTCT
TCGTTTGCTGAATCCAAGGCTTCAAAATCTATTTCCGGGGATCCTCTGGA
AACGGCTATGGAAGATAGTGGCGATGAATATGGTAGGGATGGTGAAAAAC
GCGTCACAGGCAGCGACACTACTTCTCCAACCCGACGTCCACGTCGCGCA
GCCCGTGCATCAATAAGTTTCGCTGGCATAAGGGATTTACCGATCCAGAA
ACCAGGCCAAGCACAACGAATGACGCGATTGCAGCGCAGGAAATCTATGA
GTTTAGCGGCTGTACACAGTGTAAGGAGCTCCACATCGCCTGTGAAAATG
ACTCCAGTCCCCAGGTCTCAGCCGATCAACAAGCCGCCATCCGGGCCAGT
CCAGATCACGAAAATCAGTCATCGGGATGACATCTTCCCGAGACCTGCGG
TGCCATCTGGAGTTGTGAATATAAATCAAAACCAACTCAAGACTCAACAA
CAGCAGAAGACGCTGATCTTTCCGACGACCGATGAAGCGATCGCTAACCC
GCAGGGATCTGGTCCACCACAAAGGAGGTCCGTGGGTAGGCCGCCCAAGA
AGCTACCTATGGTGCAGCGAATAGTTGCGCCGGAAACGCAGACCAAGCCA
CAGTCGCCCATAAACACCAAAGTCCTGACCATTGGCAAGCCCACCAGCTC
CGTCGCGAGTGGTAACATAAATAATATTGCTATCAAAAGCAACGTCGTTA
CTAGCATAAGCAGCAGCACCGCTACTACTAATACCATTACCAAAGGTACC
AGTAACAACAGCATCAAAACTACTGAAAACGTTAATGTAATAAGCTACAG
TCCGAATTCATCTAGCACCAGCAGCAGCAGCAAGGCCACCACTGGTGCCT
CTGGTGCGGTGATAACTAATATACCCACAACCACCACAGCTGGAACATCC
GTTCCGGTCGGAAAGAGTATAACCCAATTGAAAATGACTGAGCGAGGCAC
TCAAACCGGAGTCCAGAATCCTTTCTCCGATAATTACTTTCTCGAAATGA
TCAAGCCCCAGATGCAGGAAATGAACCCCCGTCAGAAGATGCACTTTAAG
AAGAAAGTATTCCAAGCGCTGATGGAAACCTTTGATGATGCTACCGATTT
CCCAACGTCTAAAGAACTGCAGCATTTTAATATAAACACTCCTTCAGGAT
TTGAGCACATTACAGATCCGGAACTTCGATTGGTCAGGGAGCTAGTCAGC
ATGGTGAGCGCGGCTAAGGTTACCCTAATTAGACCGCCAGGAGAAGCTAC
AGCTATAGCTACAGCTTCCCGCAGTGGAATTGCTCCTGAGGTACAGCGAG
GACCCCGAACAAATATGACACGCCAAGTCATTCAGAGGGTATACAAGCCA
GGCACTGGACAAGAGATCGCCCCCACCAGCCCGGCGGGTGGACTAGATAA
GAGGTTGTTCAGGTTAGCGGCTATGGGTGGTAAACCGAATGGCAACTTGA
GTGCCACTCAGGAAATTTTGCGCAAGGATAGTGTTGACAGTAACCATAGT
GTGGTCAAGGTGGCCAACCACGCCCCAACAGGCAGTCCCAAAGGAGCTGC
TGTAGTGGCTGCTATAAGGCCGCAGGGTTCATTGATCAACAGTTTCTTTG
GACAAGGCAATGGACCGACGACGGCCAAGGGAGCTGCCTCCGAGAATATC
CGCGCCATGTCCAGGAGGTATTCCGTGTGCGGTAGCAGCAATCCACCCAA
TGCCCAAAACGCTAGCCAAGGTTCCGCCAATGGCAGCACCATAAACTCCA
ATGCTAGCGCTATGGAAGCGTCTATGCTTAAGCGGCGATTGATAGCAGCT
GGGCATGGAATGGTGCCACCTACCCAACGCCCTCGGTATTCTGCCGTAGG
TGCTAGTCAAATGACCACTGCATCGCAAGGCAGCAGTTTACTAGTGAGGA
AGTCTGTGGGCTGCGTTCCTGCTTACCAAAAGCAAATCTCACCCACTGGC
GGTGCCTCCCTGCTTCAGAAAACTCCGCAGATTGCCAGTGTGCAAGGATC
TGCCTTCAATGACTTTGCCCAGCCCAAGCCCGCTGCAACGGCCTCTGTAA
ACGGCGAAGAAAGTTCGCCTACCTCGGCGCTGAAGCGCAGCTTGGTGGTG
GCTAATACCAAAACCTCCTTTCAGGACCTTCTTCAGCAGGCCAGTCAGAC
GGTGCAGAGAAATAAAATTGAATCCTCGGAGACAGCAGCCACTATTGCTG
CGGATGATTTTTCGCTGGACAACCTTAAGCGAGAGCCAGTGGATCCCGCG
GAGGATCACAATGACATACTCGGTGTTGCAAGCTTTCTAGACCAT

BO01629.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
stwl-RC 3114 CG3836-PC 1..3111 17..3127 15555 100 Plus
stwl-RA 3114 CG3836-PA 1..3111 17..3127 15555 100 Plus
stwl-RB 3000 CG3836-PB 35..2997 165..3127 14815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
stwl-RC 4233 CG3836-RC 178..3288 17..3127 15555 100 Plus
stwl-RA 3653 CG3836-RA 178..3288 17..3127 15555 100 Plus
stwl-RB 3429 CG3836-RB 102..3064 165..3127 14815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14403875..14406838 3127..164 14820 100 Minus
3L 28110227 3L 14409615..14409762 164..17 740 100 Minus
Blast to na_te.dros performed 2014-11-28 00:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2480 1530..1695 166 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6927 1553..1744 157 57.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7119..7204 1268..1354 126 65.2 Plus
TART-C 11124 TART-C TARTC 11124bp 8592..8657 1288..1354 125 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6828 1581..1691 123 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2428 1556..1691 119 58.1 Plus

BO01629.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:34 Download gff for BO01629.complete
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 1..3114 17..3131 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:01 Download gff for BO01629.complete
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 158..3276 10..3132 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:54 Download gff for BO01629.complete
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 178..3288 17..3129 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:35 Download gff for BO01629.complete
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 158..3276 10..3132 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:04 Download gff for BO01629.complete
Subject Subject Range Query Range Percent Splice Strand
stwl-RA 178..3288 17..3129 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:04 Download gff for BO01629.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14403873..14406837 165..3129 99 <- Minus
3L 14409615..14409762 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:54 Download gff for BO01629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14396973..14399937 165..3129 99 <- Minus
arm_3L 14402715..14402862 17..164 100   Minus

BO01629.pep Sequence

Translation from 16 to 3145

> BO01629.pep
MSAASEVNLMLLRSVEKQTALYDRTDENYRKRLPSENAWDMVASEVGESV
EKCKRRWRQLRNDYTRWCNADANRRRNGQRRLAYPLADELRFLDRHLNIA
DDMAADDDRSVSSDKDRDNNRDSEGVDHHAQASLKERASSTSKLVKEVKL
ASQVRKEKSSQDKRENWENPGDKQRSRKKSAEEKLNDLEESDEPEKVPEL
DSFLQSDNEDDECMDEEHLEDLEGFDFDLEQSNQEKELTPEKSLEKNNTD
STVSQPEFFVKQTRDPRLLIIGRKNSTSSFAESKASKSISGDPLETAMED
SGDEYGRDGEKRVTGSDTTSPTRRPRRAARASISFAGIRDLPIQKPGQAQ
RMTRLQRRKSMSLAAVHSVRSSTSPVKMTPVPRSQPINKPPSGPVQITKI
SHRDDIFPRPAVPSGVVNINQNQLKTQQQQKTLIFPTTDEAIANPQGSGP
PQRRSVGRPPKKLPMVQRIVAPETQTKPQSPINTKVLTIGKPTSSVASGN
INNIAIKSNVVTSISSSTATTNTITKGTSNNSIKTTENVNVISYSPNSSS
TSSSSKATTGASGAVITNIPTTTTAGTSVPVGKSITQLKMTERGTQTGVQ
NPFSDNYFLEMIKPQMQEMNPRQKMHFKKKVFQALMETFDDATDFPTSKE
LQHFNINTPSGFEHITDPELRLVRELVSMVSAAKVTLIRPPGEATAIATA
SRSGIAPEVQRGPRTNMTRQVIQRVYKPGTGQEIAPTSPAGGLDKRLFRL
AAMGGKPNGNLSATQEILRKDSVDSNHSVVKVANHAPTGSPKGAAVVAAI
RPQGSLINSFFGQGNGPTTAKGAASENIRAMSRRYSVCGSSNPPNAQNAS
QGSANGSTINSNASAMEASMLKRRLIAAGHGMVPPTQRPRYSAVGASQMT
TASQGSSLLVRKSVGCVPAYQKQISPTGGASLLQKTPQIASVQGSAFNDF
AQPKPAATASVNGEESSPTSALKRSLVVANTKTSFQDLLQQASQTVQRNK
IESSETAATIAADDFSLDNLKREPVDPAEDHNDILGVASFLDH

BO01629.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
stwl-PC 1037 CG3836-PC 1..1037 1..1037 5249 100 Plus
stwl-PA 1037 CG3836-PA 1..1037 1..1037 5249 100 Plus
stwl-PB 999 CG3836-PB 12..999 50..1037 5002 99.9 Plus
CG3919-PB 302 CG3919-PB 17..212 7..228 158 23 Plus