BO02217.complete Sequence
1339 bp (1339 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629557
> BO02217.complete
GAAGTTATCAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACG
ATTTCGACTGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGC
ATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAA
ACCGATTATGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACG
AACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCAT
ACCAAACTGGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCA
GTCGGTGCAGCGCCAGCAGCTCAACATGGCCATCCAATCGGATCCCAGCG
TTGTCCAGAAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGAGGTGAAC
CGCTATGTAAGCCAAATGGATGGCATCGATACCGGTGTTCGTCAGCGGCT
CAGCGCCCATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGA
TGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCT
GTCACGGCTGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAA
CAACAACAGCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGAC
TTCAGCTAATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATG
CCGAACACAGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGG
ATCTGCAGCGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCA
TTGCCAATCCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGC
GCGTTCAGCAAACCGGTCAATACCTCAGTTCCGGCCAATCTTCCGGAAAA
CCTCATCCACACACTGCCCGGCCAAACGCAGCTGCCGGTGAAGAACAGCA
CAAGCCCACCGCTGAGCCCAATCTCCTCCATCTCCAGCCACTGCGAGGAG
TCCCGGGCTGCCTCGCCCACCGTGGATGTGATGAGCAAGCACAGTTTCGC
CGGCGTCTTCTCAACTCCGCCACCAACCAGCGCGGAGACCTCCTTCAACA
CCAGCGGATCCCTCAACTTGAGTGCCGGAAGCCACGACAGCAGCGGATGC
TCGCGACCGCTGGCCCACTTGCAGCAACAGCAAGTGAGCTCCACCAGCGG
AATCGCCAAGCGCGACAGGGAGGCGGAGGCCGAGTCCAGCGACTGCTCCC
TGGACGAGCCCTCGTCCAAGAAATTCCTAGCTGGCGCCATCGAAAAGTCG
AGCTCCGCTTGGAGGCCGTGGGCAAGCTTTCTAGACCAT
BO02217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpn-RA | 1308 | CG8704-PA | 1..1305 | 17..1321 | 6525 | 100 | Plus |
| h-RB | 1014 | CG6494-PB | 103..276 | 146..319 | 360 | 80.5 | Plus |
| h-RA | 1014 | CG6494-PA | 103..276 | 146..319 | 360 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpn-RA | 2036 | CG8704-RA | 283..1587 | 17..1321 | 6525 | 100 | Plus |
| h-RB | 2335 | CG6494-RB | 594..767 | 146..319 | 360 | 80.5 | Plus |
| h-RA | 2139 | CG6494-RA | 398..571 | 146..319 | 360 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8229420..8230502 | 1321..239 | 5415 | 100 | Minus |
| 2R | 25286936 | 2R | 8231923..8232048 | 142..17 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 8231599..8231696 | 238..141 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 8677605..8677685 | 239..319 | 210 | 84 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:57:39 has no hits.
BO02217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:20 Download gff for
BO02217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpn-RA | 1..1308 | 17..1322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:58 Download gff for
BO02217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpn-RA | 280..1584 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:11 Download gff for
BO02217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpn-RA | 283..1587 | 17..1323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:20 Download gff for
BO02217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpn-RA | 280..1584 | 17..1321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:15 Download gff for
BO02217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpn-RA | 283..1587 | 17..1323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:15 Download gff for
BO02217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8229418..8230502 | 239..1323 | 99 | <- | Minus |
| 2R | 8231599..8231694 | 143..238 | 100 | <- | Minus |
| 2R | 8231923..8232048 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:11 Download gff for
BO02217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4116923..4118007 | 239..1323 | 99 | <- | Minus |
| arm_2R | 4119104..4119199 | 143..238 | 100 | <- | Minus |
| arm_2R | 4119428..4119553 | 17..142 | 100 | | Minus |
BO02217.pep Sequence
Translation from 16 to 1339
> BO02217.pep
MDYKNDINSDDDFDCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEK
RRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQ
QLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLN
QCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNSRT
ESSAPAIQMGGLQLIPSRLPSGEFALIMPNTGSAAPPPGPFAWPGSAAGV
AAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTL
PGQTQLPVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFST
PPPTSAETSFNTSGSLNLSAGSHDSSGCSRPLAHLQQQQVSSTSGIAKRD
REAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPWASFLDH
BO02217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpn-PA | 435 | CG8704-PA | 1..435 | 1..435 | 2244 | 100 | Plus |
| h-PB | 337 | CG6494-PB | 32..219 | 41..231 | 411 | 47 | Plus |
| h-PA | 337 | CG6494-PA | 32..219 | 41..231 | 411 | 47 | Plus |
| E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 14..134 | 39..157 | 244 | 38.8 | Plus |
| Side-PA | 507 | CG10446-PA | 51..507 | 41..435 | 238 | 24.9 | Plus |
