BO02243.complete Sequence
1492 bp (1492 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629558
> BO02243.complete
GAAGTTATCAGTCGACATGGATATGACCTCAACAGCGGAGGCTGCCGCTC
GCAGCTGGTACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGT
GGCAATGGGGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGG
TAGCAGCCTGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGG
CGGGCAGCAGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCC
GGACTGGACACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGG
ACACCACCGGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGC
CCTCCACCCATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCCCG
CTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGCGC
CTGGAGCATGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACA
AGCTGGGCCAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGCAT
TCGTTCCCCTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCCGT
GCAAACCGGTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCACC
AGCAGGCCACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGGAT
ATCAAGCCGTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGCGG
CACCACCCACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTGTG
TGAATTGTGGCGCCACATCGACGCCACTGTGGCGACGCGATGGAACGGGA
CACTATCTGTGCAACGCCTGTGGCCTGTACTACAAAATGAACGGCCAGAA
CCGACCCCTGATCAAGCCAAAGCGAAGACTGACCCTGCAATCGCTGCAGA
GTGCGGCCAAAAGGGCGGGCACATCCTGCGCCAACTGCAAGACCACAACC
ACAACCCTTTGGCGACGCAATGCCAGCGGTGAACCCGTGTGCAACGCCTG
CGGATTGTACTATAAGCTTCACAATGTCAATCGTCCACTCACCATGAAAA
AGGAGGGCATTCAGACGCGTAATCGCAAGCTGAGCTCCAAGTCCAAAAAG
AAGAAGGGTCTCGGTGGTGGCTGCCTGCCAATCGGTGGCCACCTGGGCAT
GGGCGACTTCAAGCCGCTGGATCCCTCGAAGGGATTCGGCGGTGGCTTCT
CTGCCTCCATGGCACAACATGGACACCTCTCGAGCGGACTGCATCCGGCA
CATGCGCACATGCACGGCAGCTGGTACACCGGCGGCATGGGCGCTTTGGG
AGCCTCGAGCGGACTCCAGGGCGGCTTCTCCACCGCCGGCTCTCTCAGCG
GAGCGGTGGTGCCCCACTCGCAGCCGTACCACTTGGGTCTCAGTTCGATG
GGCACCTGGCGCACTGACTACACGGCAAGCTTTCTAGACCAT
BO02243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RA | 1461 | CG9656-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
grn-RC | 2139 | CG9656-PC | 1..769 | 17..785 | 3845 | 100 | Plus |
grn-RB | 2100 | CG9656-PB | 1..769 | 17..785 | 3845 | 100 | Plus |
grn-RC | 2139 | CG9656-PC | 1408..2097 | 785..1474 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RA | 3451 | CG9656-RA | 416..1878 | 12..1474 | 7300 | 99.9 | Plus |
grn-RC | 4090 | CG9656-RC | 416..1189 | 12..785 | 3855 | 99.9 | Plus |
grn-RB | 4090 | CG9656-RB | 416..1189 | 12..785 | 3855 | 99.9 | Plus |
grn-RC | 4090 | CG9656-RC | 1828..2517 | 785..1474 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8179355..8179681 | 338..12 | 1620 | 99.7 | Minus |
3R | 32079331 | 3R | 8167830..8168117 | 626..339 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 8149269..8149458 | 1451..1262 | 950 | 100 | Minus |
3R | 32079331 | 3R | 8149547..8149733 | 1262..1076 | 935 | 100 | Minus |
3R | 32079331 | 3R | 8167371..8167533 | 785..623 | 815 | 100 | Minus |
3R | 32079331 | 3R | 8160963..8161110 | 931..784 | 740 | 100 | Minus |
3R | 32079331 | 3R | 8153256..8153402 | 1077..931 | 735 | 100 | Minus |
3R | 32079331 | 3R | 16039052..16039185 | 785..918 | 370 | 85.1 | Plus |
3R | 32079331 | 3R | 16000639..16000763 | 785..909 | 250 | 80 | Plus |
3R | 32079331 | 3R | 16001776..16001916 | 974..1114 | 225 | 77.3 | Plus |
3R | 32079331 | 3R | 16018006..16018161 | 975..1130 | 210 | 75.6 | Plus |
3R | 32079331 | 3R | 16039351..16039436 | 1031..1116 | 190 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:36:54 has no hits.
BO02243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:22 Download gff for
BO02243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 1..1461 | 17..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:25 Download gff for
BO02243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 419..1876 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:03 Download gff for
BO02243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 421..1878 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:22 Download gff for
BO02243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 403..1876 | 1..1474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:36 Download gff for
BO02243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 421..1878 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:36 Download gff for
BO02243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8160963..8161108 | 786..931 | 100 | <- | Minus |
3R | 8167371..8167530 | 626..785 | 100 | <- | Minus |
3R | 8148938..8148964 | 1451..1476 | 92 | <- | Minus |
3R | 8149270..8149457 | 1263..1450 | 100 | <- | Minus |
3R | 8149547..8149733 | 1076..1262 | 100 | <- | Minus |
3R | 8153258..8153401 | 932..1075 | 100 | <- | Minus |
3R | 8167831..8168117 | 339..625 | 100 | <- | Minus |
3R | 8179355..8179676 | 17..338 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:03 Download gff for
BO02243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3974660..3974686 | 1451..1476 | 92 | <- | Minus |
arm_3R | 3974992..3975179 | 1263..1450 | 100 | <- | Minus |
arm_3R | 3975269..3975455 | 1076..1262 | 100 | <- | Minus |
arm_3R | 3978980..3979123 | 932..1075 | 100 | <- | Minus |
arm_3R | 3986685..3986830 | 786..931 | 100 | <- | Minus |
arm_3R | 3993093..3993252 | 626..785 | 100 | <- | Minus |
arm_3R | 3993553..3993839 | 339..625 | 100 | <- | Minus |
arm_3R | 4005077..4005398 | 17..338 | 100 | | Minus |
BO02243.pep Sequence
Translation from 16 to 1492
> BO02243.pep
MDMTSTAEAAARSWYDSPRLGGGGSSGGGNGGGVSPQTNGLGSAGSSLAH
SHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSAFYALESNGHHRRY
YPSYHQHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQ
FACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPS
EYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS
TPKQREEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIK
PKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK
LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKP
LDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGL
QGGFSTAGSLSGAVVPHSQPYHLGLSSMGTWRTDYTASFLDH
BO02243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-PA | 486 | CG9656-PA | 1..486 | 1..486 | 2639 | 100 | Plus |
grn-PB | 699 | CG9656-PB | 1..269 | 1..269 | 1378 | 95.9 | Plus |
grn-PC | 712 | CG9656-PC | 1..269 | 1..269 | 1378 | 95.9 | Plus |
grn-PB | 699 | CG9656-PB | 312..699 | 43..486 | 1309 | 62.7 | Plus |
grn-PC | 712 | CG9656-PC | 312..699 | 43..486 | 1309 | 62.7 | Plus |
pnr-PC | 537 | CG3978-PC | 147..299 | 239..405 | 509 | 61.1 | Plus |
pnr-PD | 488 | CG3978-PD | 95..250 | 239..405 | 505 | 60.5 | Plus |