Clone BO02243 Report

Search the DGRC for BO02243

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:22
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptgrn-RA
Protein status:BO02243.pep:
Sequenced Size:1492

Clone Sequence Records

BO02243.complete Sequence

1492 bp (1492 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629558

> BO02243.complete
GAAGTTATCAGTCGACATGGATATGACCTCAACAGCGGAGGCTGCCGCTC
GCAGCTGGTACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGT
GGCAATGGGGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGG
TAGCAGCCTGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGG
CGGGCAGCAGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCC
GGACTGGACACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGG
ACACCACCGGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGC
CCTCCACCCATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCCCG
CTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGCGC
CTGGAGCATGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACA
AGCTGGGCCAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGCAT
TCGTTCCCCTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCCGT
GCAAACCGGTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCACC
AGCAGGCCACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGGAT
ATCAAGCCGTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGCGG
CACCACCCACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTGTG
TGAATTGTGGCGCCACATCGACGCCACTGTGGCGACGCGATGGAACGGGA
CACTATCTGTGCAACGCCTGTGGCCTGTACTACAAAATGAACGGCCAGAA
CCGACCCCTGATCAAGCCAAAGCGAAGACTGACCCTGCAATCGCTGCAGA
GTGCGGCCAAAAGGGCGGGCACATCCTGCGCCAACTGCAAGACCACAACC
ACAACCCTTTGGCGACGCAATGCCAGCGGTGAACCCGTGTGCAACGCCTG
CGGATTGTACTATAAGCTTCACAATGTCAATCGTCCACTCACCATGAAAA
AGGAGGGCATTCAGACGCGTAATCGCAAGCTGAGCTCCAAGTCCAAAAAG
AAGAAGGGTCTCGGTGGTGGCTGCCTGCCAATCGGTGGCCACCTGGGCAT
GGGCGACTTCAAGCCGCTGGATCCCTCGAAGGGATTCGGCGGTGGCTTCT
CTGCCTCCATGGCACAACATGGACACCTCTCGAGCGGACTGCATCCGGCA
CATGCGCACATGCACGGCAGCTGGTACACCGGCGGCATGGGCGCTTTGGG
AGCCTCGAGCGGACTCCAGGGCGGCTTCTCCACCGCCGGCTCTCTCAGCG
GAGCGGTGGTGCCCCACTCGCAGCCGTACCACTTGGGTCTCAGTTCGATG
GGCACCTGGCGCACTGACTACACGGCAAGCTTTCTAGACCAT

BO02243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 1461 CG9656-PA 1..1458 17..1474 7290 100 Plus
grn-RC 2139 CG9656-PC 1..769 17..785 3845 100 Plus
grn-RB 2100 CG9656-PB 1..769 17..785 3845 100 Plus
grn-RC 2139 CG9656-PC 1408..2097 785..1474 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 3451 CG9656-RA 416..1878 12..1474 7300 99.9 Plus
grn-RC 4090 CG9656-RC 416..1189 12..785 3855 99.9 Plus
grn-RB 4090 CG9656-RB 416..1189 12..785 3855 99.9 Plus
grn-RC 4090 CG9656-RC 1828..2517 785..1474 3450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8179355..8179681 338..12 1620 99.7 Minus
3R 32079331 3R 8167830..8168117 626..339 1440 100 Minus
3R 32079331 3R 8149269..8149458 1451..1262 950 100 Minus
3R 32079331 3R 8149547..8149733 1262..1076 935 100 Minus
3R 32079331 3R 8167371..8167533 785..623 815 100 Minus
3R 32079331 3R 8160963..8161110 931..784 740 100 Minus
3R 32079331 3R 8153256..8153402 1077..931 735 100 Minus
3R 32079331 3R 16039052..16039185 785..918 370 85.1 Plus
3R 32079331 3R 16000639..16000763 785..909 250 80 Plus
3R 32079331 3R 16001776..16001916 974..1114 225 77.3 Plus
3R 32079331 3R 16018006..16018161 975..1130 210 75.6 Plus
3R 32079331 3R 16039351..16039436 1031..1116 190 81.4 Plus
Blast to na_te.dros performed on 2014-11-28 08:36:54 has no hits.

BO02243.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:22 Download gff for BO02243.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..1461 17..1477 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:25 Download gff for BO02243.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 419..1876 17..1476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:03 Download gff for BO02243.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 421..1878 17..1476 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:22 Download gff for BO02243.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 403..1876 1..1474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:36 Download gff for BO02243.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 421..1878 17..1476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:36 Download gff for BO02243.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8160963..8161108 786..931 100 <- Minus
3R 8167371..8167530 626..785 100 <- Minus
3R 8148938..8148964 1451..1476 92 <- Minus
3R 8149270..8149457 1263..1450 100 <- Minus
3R 8149547..8149733 1076..1262 100 <- Minus
3R 8153258..8153401 932..1075 100 <- Minus
3R 8167831..8168117 339..625 100 <- Minus
3R 8179355..8179676 17..338 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:03 Download gff for BO02243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3974660..3974686 1451..1476 92 <- Minus
arm_3R 3974992..3975179 1263..1450 100 <- Minus
arm_3R 3975269..3975455 1076..1262 100 <- Minus
arm_3R 3978980..3979123 932..1075 100 <- Minus
arm_3R 3986685..3986830 786..931 100 <- Minus
arm_3R 3993093..3993252 626..785 100 <- Minus
arm_3R 3993553..3993839 339..625 100 <- Minus
arm_3R 4005077..4005398 17..338 100   Minus

BO02243.pep Sequence

Translation from 16 to 1492

> BO02243.pep
MDMTSTAEAAARSWYDSPRLGGGGSSGGGNGGGVSPQTNGLGSAGSSLAH
SHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSAFYALESNGHHRRY
YPSYHQHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQ
FACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPS
EYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS
TPKQREEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIK
PKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK
LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKP
LDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGL
QGGFSTAGSLSGAVVPHSQPYHLGLSSMGTWRTDYTASFLDH

BO02243.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
grn-PA 486 CG9656-PA 1..486 1..486 2639 100 Plus
grn-PB 699 CG9656-PB 1..269 1..269 1378 95.9 Plus
grn-PC 712 CG9656-PC 1..269 1..269 1378 95.9 Plus
grn-PB 699 CG9656-PB 312..699 43..486 1309 62.7 Plus
grn-PC 712 CG9656-PC 312..699 43..486 1309 62.7 Plus
pnr-PC 537 CG3978-PC 147..299 239..405 509 61.1 Plus
pnr-PD 488 CG3978-PD 95..250 239..405 505 60.5 Plus