Clone Sequence Records
BO02272.5prime Sequence
687 bp (535 high quality bases) assembled on 2006-10-30
> BO02272.5prime
GAAGTTATCAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTG
CTGCTGCAGCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCA
GCCTCACCGGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAA
GGCAAGCGCAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGA
AGCACCACAGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACA
GCAGCGCACAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCAC
CGCTGCAACATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAG
CTGCAACAGCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCT
GCGGTCGTTCTTTCGCTGCAAGGAACCATGGTCAGCAGTTTGCAGCAGGC
CGCCCTACTGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGG
CCCTGGAATCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTA
TTTCGCTTTTCCACAGCAACACCGGCAGCAGCAACAGCAACAACGCCACC
ACCTGCAACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGCT
CATCGATATAGCCAATATAGAGCTCAAGTCGAGCTGC
BO02272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3242-PA | 1737 | sob-RA | 1..547 | 17..563 | 2735 | 100 | Plus |
CG3242-PA | 1737 | sob-RA | 548..672 | 563..687 | 625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sob-RA | 2611 | CG3242-RA | 591..1262 | 17..687 | 3335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3579508..3580179 | 687..17 | 3310 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 04:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2877 | 23..642 | 314 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2750..2974 | 142..379 | 238 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6857 | 266..393 | 219 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7019 | 329..609 | 162 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6791 | 327..402 | 141 | 70.5 | Plus |
BO02272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:36:09 Download gff for
BO02272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-PA | 1..672 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:36:56 Download gff for
BO02272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3242-PA | 1..672 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:39:10 Download gff for
BO02272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-RA | 591..1262 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:57 Download gff for
BO02272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-RA | 591..1262 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:57 Download gff for
BO02272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3579508..3580177 | 19..687 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:39:10 Download gff for
BO02272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3579508..3580177 | 19..687 | 99 | <- | Minus |
BO02272.complete Sequence
1768 bp (1768 high quality bases) assembled on 2006-04-03
GenBank Submission: FJ629559
> BO02272.complete
GAAGTTATCAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTG
CTGCTGCAGCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCA
GCCTCACCGGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAA
GGCAAGCGCAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGA
AGCACCACAGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACA
GCAGCGCACAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCAC
CGCTGCAACATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAG
CTGCAACAGCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCT
GCGGTCGTTCTTTCGCTGCAAGGAACCATGGTCAGCAGTTTGCAGCAGGC
CGCCCTACTGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGG
CCCTGGAATCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTA
TTTCGCTTTTCCAACAGCAACACCGGCAGCAGCAACAGCAACAACGCCAC
CACCTGCAACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGC
TCATCGATATAGCCAATATAGAGCTCAAGTCGAGCTGCTCCTCCAGCTCC
TCGGGGGAACCCCCTTTGACGGCAGCGACAGCATCAGCTGCCGCCACATC
CTCGCCCAGCAGCAACAACAGCAACTCCACCAGCACACCAACAACATCCA
AGTGCGTGCCTCTGCCCTCCATTGGCACCGTTAGTGCTGCAGTGGCGGCT
GCTGCGGCTGCCGCAGCAGCTGCTGCGAGCCAACAGGCGGCGCTGGACTG
CGCAACAGCCGCAGAACTGGCAGCAGAGTGCGACTTACCGTTGCTCGATG
GCGAGGATGCTCTCTCCTTCGAGGCGGGAGATTTGGACAGCAGCTATGGA
AGCTTCATGTTTAATCCCTCAGCCTTCAGCCAGGCGGAAACGGACTCGGC
TCTGCACTCGCTGCAGGCCACCATGTACCAGGACAAGATGAGTGTCATTT
CGGGAGCGGCTGGCGGCGTAGGTGCAGGTGCGGTAGGAGGGCTGGAGGAG
GCGGGCAGCTCGGCGGCGGCAGCGGCAGCCCAGCGGTCCAAGAAGCAGTT
CATATGCAAATTCTGCAACCGACAGTTCACCAAGTCCTACAATCTGCTCA
TCCACGAAAGAACGCACACGGACGAGAGGCCTTACTCCTGCGACATCTGC
GGCAAGGCCTTCAGGAGGCAGGATCATCTGAGGGATCATAGATATATCCA
CTCCAAGGAGAAGCCCTTCAAGTGCGCGGAGTGCGGCAAGGGATTCTGTC
AGTCCCGCACTCTGGCTGTCCACAAGATCCTGCACATGGAGGAGTCGCCG
CACAAGTGCCCCGTGTGCAATCGCTCCTTCAACCAGCGTTCCAATCTGAA
GACCCACCTGCTCACCCACACCGACATCAAGCCGTACAACTGCGCCTCCT
GCGGGAAAGTCTTCCGGCGGAACTGCGACTTGCGACGTCACAGCCTGACG
CATAACTTGTCCGCCGGAGTGGGCGGTGTGGTGGGTGGCAACCTAAGTGA
TCCATTTGGCTCCGGCTCCAGCTCCAGCTCGGAGTTGGGCTTGCCCACGG
GCTCCGCCAGTACTGCAGCATCCTCCAGAGATTTGGTGGCCGTCAGCGAT
GCAAGCTTTCTAGACCAT
BO02272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sob-RA | 1737 | CG3242-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
bowl-RH | 2235 | CG10021-PH | 696..1091 | 1183..1578 | 1065 | 84.6 | Plus |
bowl-RG | 2235 | CG10021-PG | 696..1091 | 1183..1578 | 1065 | 84.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sob-RA | 2611 | CG3242-RA | 591..2324 | 17..1750 | 8670 | 100 | Plus |
bowl-RH | 3435 | CG10021-RH | 1059..1454 | 1183..1578 | 1065 | 84.6 | Plus |
bowl-RG | 3394 | CG10021-RG | 1018..1413 | 1183..1578 | 1065 | 84.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3578855..3580179 | 1341..17 | 6625 | 100 | Minus |
2L | 23513712 | 2L | 3578300..3578710 | 1750..1340 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 3605205..3605524 | 1509..1190 | 820 | 83.8 | Minus |
2L | 23513712 | 2L | 3781905..3782140 | 1343..1578 | 625 | 84.3 | Plus |
2L | 23513712 | 2L | 3780421..3780576 | 1183..1338 | 450 | 85.9 | Plus |
Blast to na_te.dros performed 2014-11-27 00:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2750..2974 | 142..379 | 238 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6857 | 266..393 | 219 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1599 | 723..796 | 186 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..7019 | 329..610 | 165 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6875 | 719..798 | 164 | 69.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1079..1154 | 723..795 | 164 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2436 | 720..798 | 162 | 70.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6889 | 560..926 | 162 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6923 | 719..795 | 158 | 70 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 98..224 | 702..824 | 155 | 63.3 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9128..9254 | 702..824 | 155 | 63.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6791 | 327..402 | 141 | 70.5 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 538..622 | 792..702 | 127 | 62.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1560 | 741..798 | 121 | 69.5 | Plus |
BO02272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:07 Download gff for
BO02272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-RA | 1..1737 | 17..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:16 Download gff for
BO02272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-RA | 588..2328 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:40 Download gff for
BO02272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-RA | 591..2324 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:07 Download gff for
BO02272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-RA | 588..2328 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:16 Download gff for
BO02272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sob-RA | 591..2324 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:16 Download gff for
BO02272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3578855..3580179 | 17..1341 | 100 | | Minus |
2L | 3578297..3578708 | 1342..1752 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:40 Download gff for
BO02272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3578297..3578708 | 1342..1752 | 99 | <- | Minus |
arm_2L | 3578855..3580179 | 17..1341 | 100 | | Minus |
BO02272.pep Sequence
Translation from 16 to 1768
> BO02272.pep
MEAVKHLSAAAAAAAAAATCSDSPAKAAASPAASSDIAEALGELKASATA
AASSASKAATSKHHSNNNHKPSAAATATAAHKKSESCNSNGNKCTAATSP
IGSKTSNAAMAAATATAAAATNDLAAAAAVVLSLQGTMVSSLQQAALLPA
NSAAAAALNLQALESYLALQRLTGKSDVFRFSNSNTGSSNSNNATTCNSS
SSEADNNALPSLIDIANIELKSSCSSSSSGEPPLTAATASAAATSSPSSN
NSNSTSTPTTSKCVPLPSIGTVSAAVAAAAAAAAAAASQQAALDCATAAE
LAAECDLPLLDGEDALSFEAGDLDSSYGSFMFNPSAFSQAETDSALHSLQ
ATMYQDKMSVISGAAGGVGAGAVGGLEEAGSSAAAAAAQRSKKQFICKFC
NRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKP
FKCAECGKGFCQSRTLAVHKILHMEESPHKCPVCNRSFNQRSNLKTHLLT
HTDIKPYNCASCGKVFRRNCDLRRHSLTHNLSAGVGGVVGGNLSDPFGSG
SSSSSELGLPTGSASTAASSRDLVAVSDASFLDH
BO02272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sob-PA | 578 | CG3242-PA | 1..578 | 1..578 | 2900 | 100 | Plus |
bowl-PH | 744 | CG10021-PH | 211..384 | 367..545 | 779 | 81 | Plus |
bowl-PG | 744 | CG10021-PG | 211..384 | 367..545 | 779 | 81 | Plus |
bowl-PF | 744 | CG10021-PF | 211..384 | 367..545 | 779 | 81 | Plus |
bowl-PA | 744 | CG10021-PA | 211..384 | 367..545 | 779 | 81 | Plus |