Clone BO02272 Report

Search the DGRC for BO02272

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:22
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptsob-RA
Protein status:BO02272.pep: validated full length
Sequenced Size:1768

Clone Sequence Records

BO02272.5prime Sequence

687 bp (535 high quality bases) assembled on 2006-10-30

> BO02272.5prime
GAAGTTATCAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTG
CTGCTGCAGCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCA
GCCTCACCGGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAA
GGCAAGCGCAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGA
AGCACCACAGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACA
GCAGCGCACAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCAC
CGCTGCAACATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAG
CTGCAACAGCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCT
GCGGTCGTTCTTTCGCTGCAAGGAACCATGGTCAGCAGTTTGCAGCAGGC
CGCCCTACTGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGG
CCCTGGAATCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTA
TTTCGCTTTTCCACAGCAACACCGGCAGCAGCAACAGCAACAACGCCACC
ACCTGCAACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGCT
CATCGATATAGCCAATATAGAGCTCAAGTCGAGCTGC

BO02272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3242-PA 1737 sob-RA 1..547 17..563 2735 100 Plus
CG3242-PA 1737 sob-RA 548..672 563..687 625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
sob-RA 2611 CG3242-RA 591..1262 17..687 3335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:43:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3579508..3580179 687..17 3310 99.9 Minus
Blast to na_te.dros performed 2015-02-11 04:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2877 23..642 314 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2750..2974 142..379 238 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6857 266..393 219 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..7019 329..609 162 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6791 327..402 141 70.5 Plus

BO02272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:36:09 Download gff for BO02272.5prime
Subject Subject Range Query Range Percent Splice Strand
sob-PA 1..672 17..687 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:36:56 Download gff for BO02272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3242-PA 1..672 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:39:10 Download gff for BO02272.5prime
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..1262 17..687 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:18:57 Download gff for BO02272.5prime
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..1262 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:18:57 Download gff for BO02272.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3579508..3580177 19..687 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:39:10 Download gff for BO02272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3579508..3580177 19..687 99 <- Minus

BO02272.complete Sequence

1768 bp (1768 high quality bases) assembled on 2006-04-03

GenBank Submission: FJ629559

> BO02272.complete
GAAGTTATCAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTG
CTGCTGCAGCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCA
GCCTCACCGGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAA
GGCAAGCGCAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGA
AGCACCACAGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACA
GCAGCGCACAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCAC
CGCTGCAACATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAG
CTGCAACAGCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCT
GCGGTCGTTCTTTCGCTGCAAGGAACCATGGTCAGCAGTTTGCAGCAGGC
CGCCCTACTGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGG
CCCTGGAATCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTA
TTTCGCTTTTCCAACAGCAACACCGGCAGCAGCAACAGCAACAACGCCAC
CACCTGCAACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGC
TCATCGATATAGCCAATATAGAGCTCAAGTCGAGCTGCTCCTCCAGCTCC
TCGGGGGAACCCCCTTTGACGGCAGCGACAGCATCAGCTGCCGCCACATC
CTCGCCCAGCAGCAACAACAGCAACTCCACCAGCACACCAACAACATCCA
AGTGCGTGCCTCTGCCCTCCATTGGCACCGTTAGTGCTGCAGTGGCGGCT
GCTGCGGCTGCCGCAGCAGCTGCTGCGAGCCAACAGGCGGCGCTGGACTG
CGCAACAGCCGCAGAACTGGCAGCAGAGTGCGACTTACCGTTGCTCGATG
GCGAGGATGCTCTCTCCTTCGAGGCGGGAGATTTGGACAGCAGCTATGGA
AGCTTCATGTTTAATCCCTCAGCCTTCAGCCAGGCGGAAACGGACTCGGC
TCTGCACTCGCTGCAGGCCACCATGTACCAGGACAAGATGAGTGTCATTT
CGGGAGCGGCTGGCGGCGTAGGTGCAGGTGCGGTAGGAGGGCTGGAGGAG
GCGGGCAGCTCGGCGGCGGCAGCGGCAGCCCAGCGGTCCAAGAAGCAGTT
CATATGCAAATTCTGCAACCGACAGTTCACCAAGTCCTACAATCTGCTCA
TCCACGAAAGAACGCACACGGACGAGAGGCCTTACTCCTGCGACATCTGC
GGCAAGGCCTTCAGGAGGCAGGATCATCTGAGGGATCATAGATATATCCA
CTCCAAGGAGAAGCCCTTCAAGTGCGCGGAGTGCGGCAAGGGATTCTGTC
AGTCCCGCACTCTGGCTGTCCACAAGATCCTGCACATGGAGGAGTCGCCG
CACAAGTGCCCCGTGTGCAATCGCTCCTTCAACCAGCGTTCCAATCTGAA
GACCCACCTGCTCACCCACACCGACATCAAGCCGTACAACTGCGCCTCCT
GCGGGAAAGTCTTCCGGCGGAACTGCGACTTGCGACGTCACAGCCTGACG
CATAACTTGTCCGCCGGAGTGGGCGGTGTGGTGGGTGGCAACCTAAGTGA
TCCATTTGGCTCCGGCTCCAGCTCCAGCTCGGAGTTGGGCTTGCCCACGG
GCTCCGCCAGTACTGCAGCATCCTCCAGAGATTTGGTGGCCGTCAGCGAT
GCAAGCTTTCTAGACCAT

BO02272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
sob-RA 1737 CG3242-PA 1..1734 17..1750 8670 100 Plus
bowl-RH 2235 CG10021-PH 696..1091 1183..1578 1065 84.6 Plus
bowl-RG 2235 CG10021-PG 696..1091 1183..1578 1065 84.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
sob-RA 2611 CG3242-RA 591..2324 17..1750 8670 100 Plus
bowl-RH 3435 CG10021-RH 1059..1454 1183..1578 1065 84.6 Plus
bowl-RG 3394 CG10021-RG 1018..1413 1183..1578 1065 84.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3578855..3580179 1341..17 6625 100 Minus
2L 23513712 2L 3578300..3578710 1750..1340 2055 100 Minus
2L 23513712 2L 3605205..3605524 1509..1190 820 83.8 Minus
2L 23513712 2L 3781905..3782140 1343..1578 625 84.3 Plus
2L 23513712 2L 3780421..3780576 1183..1338 450 85.9 Plus
Blast to na_te.dros performed 2014-11-27 00:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2750..2974 142..379 238 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6857 266..393 219 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1599 723..796 186 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..7019 329..610 165 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6875 719..798 164 69.9 Plus
roo 9092 roo DM_ROO 9092bp 1079..1154 723..795 164 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2361..2436 720..798 162 70.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6531..6889 560..926 162 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6923 719..795 158 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 98..224 702..824 155 63.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9128..9254 702..824 155 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6791 327..402 141 70.5 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 538..622 792..702 127 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1502..1560 741..798 121 69.5 Plus

BO02272.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:07 Download gff for BO02272.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 1..1737 17..1753 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:16 Download gff for BO02272.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 588..2328 17..1758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:40 Download gff for BO02272.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..2324 17..1752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:07 Download gff for BO02272.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 588..2328 17..1758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:16 Download gff for BO02272.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..2324 17..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:16 Download gff for BO02272.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3578855..3580179 17..1341 100   Minus
2L 3578297..3578708 1342..1752 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:40 Download gff for BO02272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3578297..3578708 1342..1752 99 <- Minus
arm_2L 3578855..3580179 17..1341 100   Minus

BO02272.pep Sequence

Translation from 16 to 1768

> BO02272.pep
MEAVKHLSAAAAAAAAAATCSDSPAKAAASPAASSDIAEALGELKASATA
AASSASKAATSKHHSNNNHKPSAAATATAAHKKSESCNSNGNKCTAATSP
IGSKTSNAAMAAATATAAAATNDLAAAAAVVLSLQGTMVSSLQQAALLPA
NSAAAAALNLQALESYLALQRLTGKSDVFRFSNSNTGSSNSNNATTCNSS
SSEADNNALPSLIDIANIELKSSCSSSSSGEPPLTAATASAAATSSPSSN
NSNSTSTPTTSKCVPLPSIGTVSAAVAAAAAAAAAAASQQAALDCATAAE
LAAECDLPLLDGEDALSFEAGDLDSSYGSFMFNPSAFSQAETDSALHSLQ
ATMYQDKMSVISGAAGGVGAGAVGGLEEAGSSAAAAAAQRSKKQFICKFC
NRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKP
FKCAECGKGFCQSRTLAVHKILHMEESPHKCPVCNRSFNQRSNLKTHLLT
HTDIKPYNCASCGKVFRRNCDLRRHSLTHNLSAGVGGVVGGNLSDPFGSG
SSSSSELGLPTGSASTAASSRDLVAVSDASFLDH

BO02272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
sob-PA 578 CG3242-PA 1..578 1..578 2900 100 Plus
bowl-PH 744 CG10021-PH 211..384 367..545 779 81 Plus
bowl-PG 744 CG10021-PG 211..384 367..545 779 81 Plus
bowl-PF 744 CG10021-PF 211..384 367..545 779 81 Plus
bowl-PA 744 CG10021-PA 211..384 367..545 779 81 Plus