BO02274.complete Sequence
1784 bp assembled on 2011-06-28
> BO02274.complete
GAAGTTATCAGTCGACATGGTTGGGAGATCATCGGGAAAAATGGAAAGAT
CAGTGGACGCCAGCATGGGAAAGAACTGCCGAGCCTGCGCCGAACACTCA
TCCATACTGGTGGACCTTTTCTCCAAGGAGATCTCTGATCCCCCCATTTG
GGAAATGTTGAACTCAATTCTGCCGGAGATCTGTCGCGTGAAACGGGATG
AAATGCCACAAAAGATCTGTCCTACCTGCCTGGTGGCCGCTCAAAATGCC
TTTCACTTCCGTCACAAGTGTGAGCAGAGTTTTCAGTTCTTTTCCCAGCT
CCTCCAGCTCGATAAATCAAACTCAAATCTGAGTAGATCCCATTGCAGAA
GAGGTACTATGAACCCATTAATACCCTTCGAGATAGTTGGTTGCGAGGAT
CCATTGGACACAAATGTAACCAAATTGGACGCTAATCGGCCTGATGTAAA
AACTGATATCGATGAGCCAACCGATGGAAAGGCAACTAATGGTCAGGAGA
GTGAACCATTGCAAGAAGTTTTTGAAATAACAATGAACGATATTAAAACG
GAAGATGAAGTATCCATTCAGGAGACATTTGAAGATGCCTTTGATGAAGA
AAATGATAATAACAATACTGATAGCGAAAGGGAGGATTCAGACCAATGGA
CAGTGGGCTCGACTGAAGACCAAGATGAACCCTGGATTCCCGGCGGCGGA
GGGCGCCAAACGGTTGGCGGCAATAATCAATCGCTTCTGTGCACAGAGTG
TGGAGTGAGTTACTCGACTCAAAAGGCGTTGGCAAGGCACGTTGCCAAGC
ACAAGGAGCAAGGTGATACACAAAAGCCGCACCTCTGCGATTTCTGCGGT
CGGGGATTTCGTACCAATGCCCAGCTAACGACCCATAGACGCCGTCATAC
TGGAGAGCGTCCTTTTAAATGCCCCCTCTGCCCGAAAGCTTATACGCACG
GTCCGACTCTGAAGTCGCATATGCACACCCACGACGAGGAAAAGGGTCAC
AAATGTCCACAGTGCGACAAAACCTTTTACACGAGAGGCAATCTTAGGGC
CCATATACAGAGGCACACTGGCGAACGACCCTATAAGTGTCCCGACTGCC
CACAAACCTTTGCCAAAAACTCTGGCCTTAAGTTGCATAGCCGTCTGCAC
AAGGAAGAGCGACCCTTTAAATGTGAGCTCTGCGGCAAGGGATTCGTACA
GAACCAGCATTTGATTACCCATTTGCGGGTCCACAACGGGGATCGCCAGT
TCAAGTGCCCCGACTGCGACAAGTCGTTCTTCGAGAAATCGAACATGATG
AAACATCAGCGAACCCATTCGGGTATAAAGCCATTTAAATGTGAGGAGTG
CGGCCAAGCCTTTTCCCACAACCATCACCTTAAGAGTCATCTACGCATCC
ATACAGGCGAAAAGCCCTACAAGTGCGACCAGTGCGGCAAGGGTTTCAGT
GCGAATCAGTCACTGATGAAGCATACCCTTTGGCACGTGGACAATAATGA
TCGGCCATTTAAATGTTCTCAGTGTCCCAAAGCCTATGACACTCAGCAGA
GCTTACGGGGTCACGAGAAGACGCACAAAAACCCGGATGAGCCAAAAACG
CTGCACCAATGCCCGCACTGCGACGTCAGGTTTGCTTTAAAAAAGACCCT
GGATAAGCATATCACAAGCCACAAGATTCGACCCCACCCATGCCCGCAAT
GTCCAGAGGGATTTTTCTCCCAGAAGAGCTTAAAAAAGCACTTGCGACTT
CACAACCTAAAGAAATGCAAGCTTTCTAGACCAT
BO02274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1752 | CG8474-PA | 1..1750 | 17..1766 | 8750 | 100 | Plus |
| Meics-RB | 1716 | CG8474-PB | 476..1714 | 528..1766 | 6195 | 100 | Plus |
| Meics-RB | 1716 | CG8474-PB | 1..475 | 17..491 | 2375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1940 | CG8474-RA | 74..1823 | 17..1766 | 8750 | 100 | Plus |
| Meics-RB | 1904 | CG8474-RB | 549..1787 | 528..1766 | 6195 | 100 | Plus |
| Meics-RB | 1904 | CG8474-RB | 74..548 | 17..491 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13962775..13964013 | 1766..528 | 6195 | 100 | Minus |
| 3L | 28110227 | 3L | 13964119..13964629 | 527..17 | 2555 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 2978..3029 | 1445..1496 | 116 | 69.2 | Plus |
BO02274.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:24 Download gff for
BO02274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 65..1814 | 17..1768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:59 Download gff for
BO02274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 74..1823 | 17..1768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:36 Download gff for
BO02274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 74..1823 | 17..1768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:36 Download gff for
BO02274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13962773..13964013 | 528..1768 | 99 | <- | Minus |
| 3L | 13964119..13964629 | 17..527 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:59 Download gff for
BO02274.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13955873..13957113 | 528..1768 | 99 | <- | Minus |
| arm_3L | 13957219..13957729 | 17..527 | 100 | | Minus |
BO02274.pep Sequence
Translation from 16 to 1783
> BO02274.pep
MVGRSSGKMERSVDASMGKNCRACAEHSSILVDLFSKEISDPPIWEMLNS
ILPEICRVKRDEMPQKICPTCLVAAQNAFHFRHKCEQSFQFFSQLLQLDK
SNSNLSRSHCRRGTMNPLIPFEIVGCEDPLDTNVTKLDANRPDVKTDIDE
PTDGKATNGQESEPLQEVFEITMNDIKTEDEVSIQETFEDAFDEENDNNN
TDSEREDSDQWTVGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYS
TQKALARHVAKHKEQGDTQKPHLCDFCGRGFRTNAQLTTHRRRHTGERPF
KCPLCPKAYTHGPTLKSHMHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRH
TGERPYKCPDCPQTFAKNSGLKLHSRLHKEERPFKCELCGKGFVQNQHLI
THLRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPFKCEECGQAFS
HNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWHVDNNDRPFKC
SQCPKAYDTQQSLRGHEKTHKNPDEPKTLHQCPHCDVRFALKKTLDKHIT
SHKIRPHPCPQCPEGFFSQKSLKKHLRLHNLKKCKLSRP
BO02274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-PA | 583 | CG8474-PA | 1..583 | 1..583 | 3258 | 100 | Plus |
| Meics-PB | 571 | CG8474-PB | 1..571 | 1..583 | 3173 | 97.8 | Plus |
| crol-PC | 756 | CG14938-PC | 166..519 | 228..580 | 661 | 34 | Plus |
| crol-PG | 878 | CG14938-PG | 268..641 | 229..580 | 658 | 32.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 139..492 | 242..577 | 639 | 33.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 112..470 | 242..583 | 631 | 33.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 84..438 | 242..579 | 620 | 33.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 76..380 | 263..581 | 606 | 39.1 | Plus |
| CG5245-PA | 501 | CG5245-PA | 83..330 | 329..583 | 551 | 41 | Plus |
| CG5245-PA | 501 | CG5245-PA | 59..270 | 355..579 | 421 | 36.9 | Plus |
| CG5245-PA | 501 | CG5245-PA | 82..252 | 412..588 | 317 | 34.8 | Plus |
| crol-PC | 756 | CG14938-PC | 325..527 | 242..415 | 296 | 31.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 390..493 | 242..349 | 184 | 30.6 | Plus |
