BO02281.complete Sequence
1921 bp (1921 high quality bases) assembled on 2006-04-03
GenBank Submission: FJ629560
> BO02281.complete
GAAGTTATCAGTCGACATGATGGACGTAAGCAGCATGTACGGCAACCACC
CGCACCACCACCATCCACATGCCAATGCCTACGACGGCTACAGCACCACC
ACCGCGTCGGCGGCCAACGCCAGCAGCTACTTTGCTCCGCAGCAACACCA
GCCCCACCTGCAGCTGCAGCAGCAGCAACAGCATCAGCATTTGCAGCAGC
CCCAGCAGCACCTCACCTACAATGGCTACGAGAGCAGCTCCCCAGGCAAC
TACTATCCGCAGCAGCAGGCGCAGCTGACACCACCGCCCACCAGCAGCCA
CCAGGTGGTGCAGCAGCACCAGCAACAGCAGCAGGCGCAGCAGCAACAGC
TCTATCCGCATTCGCATCTCTTTAGTCCCAGTGCGGCGGAGTATGGCATC
ACCACGAGTACGACCACGGGAAATCCGGGCACGCCGCTCCATCCTAGTAG
CCACTCTCCTGCGGACTCCTACTACGAAAGTGACTCGGTGCACTCGTACT
ACGCTACCGCCGCAGTGGCCACAGTTGCTCCACCCAGCAATAGCTCACCT
ATTACCGCCGCCAATGCAAGTGCCACCAGCAACACACAACAACAGCAGCA
ACAGGCAGCAATCATCAGCTCCGAGAACGGGATGATGTACACCAACCTGG
ACTGCATGTATCCCACGGCCCAGGCTCAGGCTCCGGTTCACGGATATGCC
GGCCAGATCGAGGAGAAATACGCCGCCGTCCTGCACGCCAGCTATGCACC
CGGAATGGTGCTGGAGGATCAGGATCCAATGATGCAGCAGGCCACGCAGT
CGCAGATGTGGCACCACCAGCAACATCTGGCAGGCAGCTATGCCCTAGAT
GCCATGGACTCGCTAGGAATGCACGCCCACATGCATCACGGCCTGCCCCA
CGGACACCTGGGCAACTTGGCCAACAATCCGCATCAGCAACAGCCACAAG
TCCAGCAGCAACAGCAGCAGCCGCACCAGCAACCGCAACATCCGCAGAAC
CAATCCCCAGCGGCACACCAGCAGCACCACCAGAACTCCGTGTCGCCCAA
CGGTGGAATGAATCGCCAGCAGCGCGGGGGAGTGATCTCCCCGGGTAGCT
CCACTTCCTCCTCCACCTCCGCCTCGAATGGAGCACATCCTGCCAGCACG
CAATCAAAGTCGCCAAATCATTCCAGCAGCATCCCCACCTACAAGTGGAT
GCAACTCAAGAGGAATGTTCCAAAGCCTCAAGCACCGAAACTACCTGCCA
GTGGAATCGCCAGCATGCACGACTACCAGATGAATGGACAGCTGGACATG
TGCCGCGGTGGAGGAGGCGGGGGCAGCGGCGTCGGGAACGGTCCCGTGGG
CGTTGGGGGCAACGGATCCCCCGGGATCGGAGGCGTCCTTTCCGTGCAGA
ACTCCCTGATAATGGCGAACAGTGCGGCGGCGGCGGGAAGTGCCCATCCC
AACGGCATGGGCGTGGGTCTGGGCAGCGGATCCGGACTGAGCAGCTGCAG
CCTCTCCAGCAACACCAACAACTCCGGCCGGACGAACTTCACCAACAAGC
AGCTGACCGAGCTGGAAAAAGAGTTCCACTTCAATCGCTACTTGACGCGG
GCGCGCCGCATTGAAATCGCCAATACGTTGCAGCTTAATGAAACGCAGGT
CAAAATCTGGTTCCAGAACCGCCGCATGAAGCAGAAGAAGCGCGTGAAGG
AGGGCCTCATTCCGGCGGACATCCTGACGCAGCACTCCACGTCCGTGATC
AGCGAGAAGCCGCCGCAGCAGCAGCAGCCACAGCCGCCGGAGCTGCAGTT
GAAGTCGCAGGGCAGCGATCTGGGCGGGAATGAGCTGGCCACAGGAGCAC
CTTCGACACCCACGACAGCCATGACACTGACAGCACCCACGAGCAAGCAA
AGTGCAAGCTTTCTAGACCAT
BO02281.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 1890 | CG1264-PA | 1..1887 | 17..1903 | 9420 | 99.9 | Plus |
| lab-RB | 642 | CG1264-PB | 1..639 | 1265..1903 | 3195 | 100 | Plus |
| ftz-RA | 1233 | CG2047-PA | 802..933 | 1559..1690 | 210 | 77.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 2775 | CG1264-RA | 245..2131 | 17..1903 | 9420 | 99.9 | Plus |
| lab-RB | 1586 | CG1264-RB | 272..942 | 1233..1903 | 3355 | 100 | Plus |
| ftz-RA | 1774 | CG2047-RA | 872..1003 | 1559..1690 | 210 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6677131..6678346 | 1232..17 | 6065 | 99.9 | Minus |
| 3R | 32079331 | 3R | 6662569..6662988 | 1650..1231 | 2100 | 100 | Minus |
| 3R | 32079331 | 3R | 6662071..6662329 | 1903..1645 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 6865342..6865473 | 1559..1690 | 210 | 77.3 | Plus |
Blast to na_te.dros performed 2014-11-28 08:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2539 | 912..1029 | 197 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2384 | 1748..1798 | 117 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6837..6927 | 1490..1578 | 117 | 60.4 | Plus |
BO02281.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:47:59 Download gff for
BO02281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 1..1890 | 17..1906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:01 Download gff for
BO02281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2131 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:31 Download gff for
BO02281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2131 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:47:59 Download gff for
BO02281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2144 | 17..1914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:53 Download gff for
BO02281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2131 | 17..1905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:53 Download gff for
BO02281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6662068..6662325 | 1649..1905 | 99 | <- | Minus |
| 3R | 6662571..6662986 | 1233..1648 | 100 | <- | Minus |
| 3R | 6677131..6678346 | 17..1232 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:31 Download gff for
BO02281.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2487790..2488047 | 1649..1905 | 99 | <- | Minus |
| arm_3R | 2488293..2488708 | 1233..1648 | 100 | <- | Minus |
| arm_3R | 2502853..2504068 | 17..1232 | 99 | | Minus |
BO02281.pep Sequence
Translation from 16 to 1921
> BO02281.pep
MMDVSSMYGNHPHHHHPHANAYDGYSTTTASAANASSYFAPQQHQPHLQL
QQQQQHQHLQQPQQHLTYNGYESSSPGNYYPQQQAQLTPPPTSSHQVVQQ
HQQQQQAQQQQLYPHSHLFSPSAAEYGITTSTTTGNPGTPLHPSSHSPAD
SYYESDSVHSYYATAAVATVAPPSNSSPITAANASATSNTQQQQQQAAII
SSENGMMYTNLDCMYPTAQAQAPVHGYAGQIEEKYAAVLHASYAPGMVLE
DQDPMMQQATQSQMWHHQQHLAGSYALDAMDSLGMHAHMHHGLPHGHLGN
LANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNR
QQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRN
VPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNG
SPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNT
NNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQ
NRRMKQKKRVKEGLIPADILTQHSTSVISEKPPQQQQPQPPELQLKSQGS
DLGGNELATGAPSTPTTAMTLTAPTSKQSASFLDH
BO02281.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-PA | 629 | CG1264-PA | 1..629 | 1..629 | 3348 | 100 | Plus |
| lab-PB | 213 | CG1264-PB | 1..213 | 417..629 | 1103 | 100 | Plus |
| Scr-PB | 417 | CG1030-PB | 85..384 | 288..561 | 307 | 34 | Plus |
| Scr-PA | 417 | CG1030-PA | 85..384 | 288..561 | 307 | 34 | Plus |
| abd-A-PB | 590 | CG10325-PB | 9..458 | 112..561 | 262 | 24.8 | Plus |
