Clone BO02323 Report

Search the DGRC for BO02323

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:23
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptSpps-RA
Protein status:BO02323.pep: Imported from assembly
Sequenced Size:2938

Clone Sequence Records

BO02323.complete Sequence

2938 bp assembled on 2008-09-23

GenBank Submission: MN238601

> BO02323.complete
GAAGTTATCAGTCGACATGCTGCAGTACAAGAGTGCCGCCAGTGCGGCGA
CTAGTGCGCCACCCGCCACGCCTTTGGCGGCAGGCGGTTCCAGCAAGGCG
ACGATTCCACCAAATGGAGCTAGTGCAGCAGCTTCACAAACGCAGGTTCA
CGGTGCTCCCGGGACACCAACCATGCAGCAGATCATCAACATTCACCAAA
TGCCTCCTCAGTTTGCAGGCGGAGCGGTTGCCGGGAACGGACAGAACGCT
GGCATGCCCCAAAACATGTTCCAGATCGTACAGCCCATGCCCATGCAAAC
GGTGAACATTGATGGCCAGGAGGCCATCTTCATACCAAACCTCAATGCAC
AACTGGCCACCGCTCAGGCGGTCAACTTCAACGGGCAACAGGCCTTTATC
ACGCCCAACGGTCAAATTCTGCGGGCTCCCCAGATGGCAGCTAATCCGGC
AGCCTCTAACTGCATTCAGCTGCAACAGCTGAACGGCTTGGGCCAGGAGC
AAACCCAGCTGATCACCATACCCGGCACCAACATTCAAATACCCGTCACC
AATCTCATTCAGCAACAACAGCAGGCACAACAAGTGCACCAGGGTACAGT
GCAACAGCAGGCACAAGGAACAAATGCATCTGGAGCCAATGGATCGGGAG
TTACCAATAGTGGGACAGCGGGTCAGCTGCCGGGCAGCATCACCATACCG
GGCACAAACCTGCAGATACCAACCTCGGTAGCGGCGGCGAATGGATTGCT
GGGAAACATCTCCAATATCTCCAATTTACTAGGCGGCGGGCAATCTATAA
AGTTGGAGAACGGCCAATTGCAGATGCGGCCGCAACTGGTGCAGTTTCCG
GCGCCAGCCATGCCGCAGCAGCAACAAACGGTTGCTGTGCAGATTCCCGT
TCAGACTGCTAACGGACAGACCATCTACCAGACTGTACATGTGCCCGTCC
AGGCAGCGGCAACATCGAGCGGCGGACTGCAAAACCTGATGCAGGCGCAA
TCCCTGCAGATGCCCTCCGCCTCGCAGATGCAAATCATCCCGCAGTTCTC
ACAGATAGCCCAGATTGTTACGCCCAACGGTCAGATTCAGCAGGTGCAAC
TGGCAATGCCGTATCCTCAGCTGCCTCCGAATGCCAACATTATACATATC
CAGAATCCCCACCAGCAGCAGCAACAACAAGTACAACAACAACAACAGCA
GCAGCAGGCGCAACAGCAGCAGCAAGCGCAACAGCAACAGGCACAGCAGC
AGCAACAACAACAGGTCCAGGCGCAGCACCAGCAGCTCCTTCAGGCGATC
AGCGATGCCTCGGCGGGGGGACAACTGCCGCCCAATCAGCCCATCACCAT
TACCAATGCCCAGGGCCAACAGCTGACCGTGATTCCCGCCCAACTACGCC
CAAATGCGCCTACCGCACCCACTCCTGCTCCAGCTGGTGTGCCCACACCA
ATGCAGATGCCCAATCTTCAGGCTTTACCCATCCAGAACATCCCAGGCCT
GGGTCAAGTGCAAATCATTCACGCCAATCAGCTGCCTCCTAATCTGCCAG
CCAACTTCCAGCAAGTACTAACCCAACTACCCATGTCGCATCCTCAAGTG
CAAACTCAGGGCCAAGTTCAGGTGATGCCCAAGCAGGAGCCGCAGAGTCC
AACGCAAATGATCACCAGCATCAAGCAAGAGCCGCCGGATACCTTTGGAC
CCATTTCCGCAACTGGTAATCCTCCGGCACCTGCCTCTACTCCAAACACA
GCCTCACCGCAACAGCAGCAGATCAAGTTCCTGCATACGGAAAGCAATTC
CCTGTCCAGCCTGAGCATACCAGCCTCCATTCAGATCACAGCCCTGCCAC
AGCAAGCGACGAATACACCGAATACCCCAGCCACAACCCAACCAATTCCC
GTATCGTTACCTGCAAGAAGTAAGGTCAACGCTGTGACCACGTCAAGCAC
CCAGATTACAATTGCGCCGACTGGTGGCCAAGTGGTGTCCGTCACGACGC
AGGCTAGGGGAGCAACTGCCAGCATAAGGAGCACGAACACCAGCACGACG
ACTATAACAACGCCGTCACAAAGCCATCTCAATATGAACATAAGTGTGGC
CAGCGTCGGAGGTGCTGCAACTGGCGGCGGCGGTGGAACAGCGACTGGAG
AGCCCAAACCACGCTTAAAGCGAGTAGCCTGCACCTGTCCCAATTGTACA
GATGGCGAAAAACACTCGGACAAGAAGCGCCAGCATATATGCCATATAAC
CGGCTGCCATAAGGTATACGGGAAAACTTCCCATCTAAGGGCTCACCTGC
GTTGGCATACTGGCGAGCGACCATTTGTCTGCTCCTGGGCGTTTTGCGGC
AAGCGCTTCACCCGCTCCGATGAACTGCAGCGCCACCGACGAACGCACAC
GGGAGAGAAGCGTTTCCAGTGCCAGGAGTGCAACAAAAAGTTCATGCGCA
GCGATCACCTGTCGAAGCACATCAAGACGCACTTTAAGAGCCGCTCTGGC
GTGGAGCTAATTGAGCTGAGCATCAAGCAGGAGACCAAGGGTGGCAATGC
ACCGAAAAGCATTAGCACGGTGAACGGCATTGTGACGATTGAGATTCCGG
GCGGCGGTTCAGCGGCGGCGGGCAGTGGAGCCTCCAGTGTGGCGGCCACG
GTTGCAGGCTCAACTGTGACGCCGGGCGGGGCCACGATCGTTCAGCTGCC
GACTGTGGAGGCCAGCGGCGGGGGTGATAGTTTCGGCGATGATGAGGACG
ACGAGGAGGATGATGAATTGACCGAAGAGGACGACGAAGACGAGGAGCTC
GACGAGGACGATATGGATGATTGCGAGGATGAGGAGGATGACGAGGATCC
AGAACTAGACAGTGGCGATGAAGTGAAGATGACAATTGCGGTCAGTGAGC
CTGGCGACAATTCGTCCAACGCAAGCTTTCTAGACCAT

BO02323.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Spps-RB 2958 CG5669-PB 1..2904 17..2920 14520 100 Plus
Spps-RA 2907 CG5669-PA 1..2904 17..2920 14520 100 Plus
Sp1-RF 2181 CG1343-PF 1180..1401 2261..2482 300 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
Spps-RB 3490 CG5669-RB 279..3183 16..2920 14525 100 Plus
Spps-RA 3490 CG5669-RA 279..3183 16..2920 14525 100 Plus
Sp1-RF 3593 CG1343-RF 2096..2317 2261..2482 300 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24223752..24226656 2920..16 14525 100 Minus
X 23542271 X 9754301..9754522 2261..2482 300 75.7 Plus
Blast to na_te.dros performed 2014-11-27 07:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6859 493..638 145 60.5 Plus

BO02323.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:51:21 Download gff for BO02323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5669-RA 282..3194 16..2930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:47 Download gff for BO02323.complete
Subject Subject Range Query Range Percent Splice Strand
Spps-RA 280..3183 17..2922 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:47 Download gff for BO02323.complete
Subject Subject Range Query Range Percent Splice Strand
CG5669-RA 283..3186 17..2922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:22 Download gff for BO02323.complete
Subject Subject Range Query Range Percent Splice Strand
Spps-RA 280..3183 17..2922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:22 Download gff for BO02323.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24223748..24226655 17..2922 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:47 Download gff for BO02323.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20049470..20052377 17..2922 99   Minus

BO02323.pep Sequence

Translation from 16 to 2938

> BO02323.pep
MLQYKSAASAATSAPPATPLAAGGSSKATIPPNGASAAASQTQVHGAPGT
PTMQQIINIHQMPPQFAGGAVAGNGQNAGMPQNMFQIVQPMPMQTVNIDG
QEAIFIPNLNAQLATAQAVNFNGQQAFITPNGQILRAPQMAANPAASNCI
QLQQLNGLGQEQTQLITIPGTNIQIPVTNLIQQQQQAQQVHQGTVQQQAQ
GTNASGANGSGVTNSGTAGQLPGSITIPGTNLQIPTSVAAANGLLGNISN
ISNLLGGGQSIKLENGQLQMRPQLVQFPAPAMPQQQQTVAVQIPVQTANG
QTIYQTVHVPVQAAATSSGGLQNLMQAQSLQMPSASQMQIIPQFSQIAQI
VTPNGQIQQVQLAMPYPQLPPNANIIHIQNPHQQQQQQVQQQQQQQQAQQ
QQQAQQQQAQQQQQQQVQAQHQQLLQAISDASAGGQLPPNQPITITNAQG
QQLTVIPAQLRPNAPTAPTPAPAGVPTPMQMPNLQALPIQNIPGLGQVQI
IHANQLPPNLPANFQQVLTQLPMSHPQVQTQGQVQVMPKQEPQSPTQMIT
SIKQEPPDTFGPISATGNPPAPASTPNTASPQQQQIKFLHTESNSLSSLS
IPASIQITALPQQATNTPNTPATTQPIPVSLPARSKVNAVTTSSTQITIA
PTGGQVVSVTTQARGATASIRSTNTSTTTITTPSQSHLNMNISVASVGGA
ATGGGGGTATGEPKPRLKRVACTCPNCTDGEKHSDKKRQHICHITGCHKV
YGKTSHLRAHLRWHTGERPFVCSWAFCGKRFTRSDELQRHRRTHTGEKRF
QCQECNKKFMRSDHLSKHIKTHFKSRSGVELIELSIKQETKGGNAPKSIS
TVNGIVTIEIPGGGSAAAGSGASSVAATVAGSTVTPGGATIVQLPTVEAS
GGGDSFGDDEDDEEDDELTEEDDEDEELDEDDMDDCEDEEDDEDPELDSG
DEVKMTIAVSEPGDNSSNASFLDH

BO02323.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spps-PB 985 CG5669-PB 1..968 1..968 4987 100 Plus
Spps-PA 968 CG5669-PA 1..968 1..968 4987 100 Plus
Sp1-PB 520 CG1343-PB 124..351 681..889 501 46.5 Plus
Sp1-PD 715 CG1343-PD 319..546 681..889 501 46.5 Plus
Sp1-PE 720 CG1343-PE 324..551 681..889 501 46.5 Plus
Sp1-PB 520 CG1343-PB 405..485 360..440 165 45.7 Plus
Sp1-PD 715 CG1343-PD 600..680 360..440 165 45.7 Plus