BO02323.complete Sequence
2938 bp assembled on 2008-09-23
GenBank Submission: MN238601
> BO02323.complete
GAAGTTATCAGTCGACATGCTGCAGTACAAGAGTGCCGCCAGTGCGGCGA
CTAGTGCGCCACCCGCCACGCCTTTGGCGGCAGGCGGTTCCAGCAAGGCG
ACGATTCCACCAAATGGAGCTAGTGCAGCAGCTTCACAAACGCAGGTTCA
CGGTGCTCCCGGGACACCAACCATGCAGCAGATCATCAACATTCACCAAA
TGCCTCCTCAGTTTGCAGGCGGAGCGGTTGCCGGGAACGGACAGAACGCT
GGCATGCCCCAAAACATGTTCCAGATCGTACAGCCCATGCCCATGCAAAC
GGTGAACATTGATGGCCAGGAGGCCATCTTCATACCAAACCTCAATGCAC
AACTGGCCACCGCTCAGGCGGTCAACTTCAACGGGCAACAGGCCTTTATC
ACGCCCAACGGTCAAATTCTGCGGGCTCCCCAGATGGCAGCTAATCCGGC
AGCCTCTAACTGCATTCAGCTGCAACAGCTGAACGGCTTGGGCCAGGAGC
AAACCCAGCTGATCACCATACCCGGCACCAACATTCAAATACCCGTCACC
AATCTCATTCAGCAACAACAGCAGGCACAACAAGTGCACCAGGGTACAGT
GCAACAGCAGGCACAAGGAACAAATGCATCTGGAGCCAATGGATCGGGAG
TTACCAATAGTGGGACAGCGGGTCAGCTGCCGGGCAGCATCACCATACCG
GGCACAAACCTGCAGATACCAACCTCGGTAGCGGCGGCGAATGGATTGCT
GGGAAACATCTCCAATATCTCCAATTTACTAGGCGGCGGGCAATCTATAA
AGTTGGAGAACGGCCAATTGCAGATGCGGCCGCAACTGGTGCAGTTTCCG
GCGCCAGCCATGCCGCAGCAGCAACAAACGGTTGCTGTGCAGATTCCCGT
TCAGACTGCTAACGGACAGACCATCTACCAGACTGTACATGTGCCCGTCC
AGGCAGCGGCAACATCGAGCGGCGGACTGCAAAACCTGATGCAGGCGCAA
TCCCTGCAGATGCCCTCCGCCTCGCAGATGCAAATCATCCCGCAGTTCTC
ACAGATAGCCCAGATTGTTACGCCCAACGGTCAGATTCAGCAGGTGCAAC
TGGCAATGCCGTATCCTCAGCTGCCTCCGAATGCCAACATTATACATATC
CAGAATCCCCACCAGCAGCAGCAACAACAAGTACAACAACAACAACAGCA
GCAGCAGGCGCAACAGCAGCAGCAAGCGCAACAGCAACAGGCACAGCAGC
AGCAACAACAACAGGTCCAGGCGCAGCACCAGCAGCTCCTTCAGGCGATC
AGCGATGCCTCGGCGGGGGGACAACTGCCGCCCAATCAGCCCATCACCAT
TACCAATGCCCAGGGCCAACAGCTGACCGTGATTCCCGCCCAACTACGCC
CAAATGCGCCTACCGCACCCACTCCTGCTCCAGCTGGTGTGCCCACACCA
ATGCAGATGCCCAATCTTCAGGCTTTACCCATCCAGAACATCCCAGGCCT
GGGTCAAGTGCAAATCATTCACGCCAATCAGCTGCCTCCTAATCTGCCAG
CCAACTTCCAGCAAGTACTAACCCAACTACCCATGTCGCATCCTCAAGTG
CAAACTCAGGGCCAAGTTCAGGTGATGCCCAAGCAGGAGCCGCAGAGTCC
AACGCAAATGATCACCAGCATCAAGCAAGAGCCGCCGGATACCTTTGGAC
CCATTTCCGCAACTGGTAATCCTCCGGCACCTGCCTCTACTCCAAACACA
GCCTCACCGCAACAGCAGCAGATCAAGTTCCTGCATACGGAAAGCAATTC
CCTGTCCAGCCTGAGCATACCAGCCTCCATTCAGATCACAGCCCTGCCAC
AGCAAGCGACGAATACACCGAATACCCCAGCCACAACCCAACCAATTCCC
GTATCGTTACCTGCAAGAAGTAAGGTCAACGCTGTGACCACGTCAAGCAC
CCAGATTACAATTGCGCCGACTGGTGGCCAAGTGGTGTCCGTCACGACGC
AGGCTAGGGGAGCAACTGCCAGCATAAGGAGCACGAACACCAGCACGACG
ACTATAACAACGCCGTCACAAAGCCATCTCAATATGAACATAAGTGTGGC
CAGCGTCGGAGGTGCTGCAACTGGCGGCGGCGGTGGAACAGCGACTGGAG
AGCCCAAACCACGCTTAAAGCGAGTAGCCTGCACCTGTCCCAATTGTACA
GATGGCGAAAAACACTCGGACAAGAAGCGCCAGCATATATGCCATATAAC
CGGCTGCCATAAGGTATACGGGAAAACTTCCCATCTAAGGGCTCACCTGC
GTTGGCATACTGGCGAGCGACCATTTGTCTGCTCCTGGGCGTTTTGCGGC
AAGCGCTTCACCCGCTCCGATGAACTGCAGCGCCACCGACGAACGCACAC
GGGAGAGAAGCGTTTCCAGTGCCAGGAGTGCAACAAAAAGTTCATGCGCA
GCGATCACCTGTCGAAGCACATCAAGACGCACTTTAAGAGCCGCTCTGGC
GTGGAGCTAATTGAGCTGAGCATCAAGCAGGAGACCAAGGGTGGCAATGC
ACCGAAAAGCATTAGCACGGTGAACGGCATTGTGACGATTGAGATTCCGG
GCGGCGGTTCAGCGGCGGCGGGCAGTGGAGCCTCCAGTGTGGCGGCCACG
GTTGCAGGCTCAACTGTGACGCCGGGCGGGGCCACGATCGTTCAGCTGCC
GACTGTGGAGGCCAGCGGCGGGGGTGATAGTTTCGGCGATGATGAGGACG
ACGAGGAGGATGATGAATTGACCGAAGAGGACGACGAAGACGAGGAGCTC
GACGAGGACGATATGGATGATTGCGAGGATGAGGAGGATGACGAGGATCC
AGAACTAGACAGTGGCGATGAAGTGAAGATGACAATTGCGGTCAGTGAGC
CTGGCGACAATTCGTCCAACGCAAGCTTTCTAGACCAT
BO02323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spps-RB | 2958 | CG5669-PB | 1..2904 | 17..2920 | 14520 | 100 | Plus |
Spps-RA | 2907 | CG5669-PA | 1..2904 | 17..2920 | 14520 | 100 | Plus |
Sp1-RF | 2181 | CG1343-PF | 1180..1401 | 2261..2482 | 300 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spps-RB | 3490 | CG5669-RB | 279..3183 | 16..2920 | 14525 | 100 | Plus |
Spps-RA | 3490 | CG5669-RA | 279..3183 | 16..2920 | 14525 | 100 | Plus |
Sp1-RF | 3593 | CG1343-RF | 2096..2317 | 2261..2482 | 300 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24223752..24226656 | 2920..16 | 14525 | 100 | Minus |
X | 23542271 | X | 9754301..9754522 | 2261..2482 | 300 | 75.7 | Plus |
Blast to na_te.dros performed 2014-11-27 07:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6859 | 493..638 | 145 | 60.5 | Plus |
BO02323.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:51:21 Download gff for
BO02323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5669-RA | 282..3194 | 16..2930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:47 Download gff for
BO02323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spps-RA | 280..3183 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:47 Download gff for
BO02323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5669-RA | 283..3186 | 17..2922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:22 Download gff for
BO02323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spps-RA | 280..3183 | 17..2922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:22 Download gff for
BO02323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24223748..24226655 | 17..2922 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:47 Download gff for
BO02323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20049470..20052377 | 17..2922 | 99 | | Minus |
BO02323.pep Sequence
Translation from 16 to 2938
> BO02323.pep
MLQYKSAASAATSAPPATPLAAGGSSKATIPPNGASAAASQTQVHGAPGT
PTMQQIINIHQMPPQFAGGAVAGNGQNAGMPQNMFQIVQPMPMQTVNIDG
QEAIFIPNLNAQLATAQAVNFNGQQAFITPNGQILRAPQMAANPAASNCI
QLQQLNGLGQEQTQLITIPGTNIQIPVTNLIQQQQQAQQVHQGTVQQQAQ
GTNASGANGSGVTNSGTAGQLPGSITIPGTNLQIPTSVAAANGLLGNISN
ISNLLGGGQSIKLENGQLQMRPQLVQFPAPAMPQQQQTVAVQIPVQTANG
QTIYQTVHVPVQAAATSSGGLQNLMQAQSLQMPSASQMQIIPQFSQIAQI
VTPNGQIQQVQLAMPYPQLPPNANIIHIQNPHQQQQQQVQQQQQQQQAQQ
QQQAQQQQAQQQQQQQVQAQHQQLLQAISDASAGGQLPPNQPITITNAQG
QQLTVIPAQLRPNAPTAPTPAPAGVPTPMQMPNLQALPIQNIPGLGQVQI
IHANQLPPNLPANFQQVLTQLPMSHPQVQTQGQVQVMPKQEPQSPTQMIT
SIKQEPPDTFGPISATGNPPAPASTPNTASPQQQQIKFLHTESNSLSSLS
IPASIQITALPQQATNTPNTPATTQPIPVSLPARSKVNAVTTSSTQITIA
PTGGQVVSVTTQARGATASIRSTNTSTTTITTPSQSHLNMNISVASVGGA
ATGGGGGTATGEPKPRLKRVACTCPNCTDGEKHSDKKRQHICHITGCHKV
YGKTSHLRAHLRWHTGERPFVCSWAFCGKRFTRSDELQRHRRTHTGEKRF
QCQECNKKFMRSDHLSKHIKTHFKSRSGVELIELSIKQETKGGNAPKSIS
TVNGIVTIEIPGGGSAAAGSGASSVAATVAGSTVTPGGATIVQLPTVEAS
GGGDSFGDDEDDEEDDELTEEDDEDEELDEDDMDDCEDEEDDEDPELDSG
DEVKMTIAVSEPGDNSSNASFLDH
BO02323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spps-PB | 985 | CG5669-PB | 1..968 | 1..968 | 4987 | 100 | Plus |
Spps-PA | 968 | CG5669-PA | 1..968 | 1..968 | 4987 | 100 | Plus |
Sp1-PB | 520 | CG1343-PB | 124..351 | 681..889 | 501 | 46.5 | Plus |
Sp1-PD | 715 | CG1343-PD | 319..546 | 681..889 | 501 | 46.5 | Plus |
Sp1-PE | 720 | CG1343-PE | 324..551 | 681..889 | 501 | 46.5 | Plus |
Sp1-PB | 520 | CG1343-PB | 405..485 | 360..440 | 165 | 45.7 | Plus |
Sp1-PD | 715 | CG1343-PD | 600..680 | 360..440 | 165 | 45.7 | Plus |