BO02547.complete Sequence
1375 bp (1375 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629563
> BO02547.complete
GAAGTTATCAGTCGACATGCGGTCACACAGCGCAGGTCTAAAATTGTTTA
AAACTCATTTAATTGAAATTAGCCTTAATTTCCAGCCCCCTTGCAAAAAA
ACGCTAGCCAGGATGGCCAGCTTGCCAGTGATTCTGCAATGCAGGATCTG
CTTGGGCGATTTCGAAGAGAGCCAAATGATCTGCCTGTTTGGGGATAAAG
GCGAAAGTGACCTCAGGAAAAAGTTGGAGCTGTGCTGTAGGATTAGGGTT
CGCCAATCCCCGCAGCTGCCCGAGAAGGCCTGCAACAGCTGTTGCGAATT
CGTCCAAATGTGGTTCAACTTTCGCCAGATGTGCCTGAACTCGCAGGTCT
ACTGGGAAACAAGTTCCTCGGAGAGACCAGAGGCTCTTGCCCAGGCAAGC
GATGCCGAGTATATGTTGTATCTGTACGAGAACCTACATCTGAAACTAGG
CACAGAGAATCAGGAGAAGGAAGAGATCACCGCAATAGAGGAGGGGGATG
AACAGCAGGAGGATCAGTCCCAGGAAGTTCTCGATTTTAACGGATTTATC
ATAAACGAATCGATTGAGGAGGACGAAGAGCCTAATACGGAAAGTCCTGA
GCAGATTCTGATTTCCCACATGGACTCCTACGTTGATGATCAACAAATGG
AAGAACTCATTGATGATAAGGGTGAGCTTGTCGAGGAATTATCCAATGCA
AACACGTTTTATGAGGTTGAGTACGGGGACGAGGAACTTCTCATGTCAAG
CGCTCCTTCGCCACATCCCAGCTTCAAAATGGACAAACAAAAGCCGGGAA
GGCCTCGCAAACCGGACGCCGAACTGAAATTCAAACGCAAGGATATCAAC
GCCAAGGAAAGGGGGAACCAGCCAAAGTGCAAGGAAGAGGAGAAGTTCAT
GTGCATCCTGTGCGGAAACGTCTTTTACAAGAAATCTGTTTTCACGGCCC
ACATGATGACCCATTCAGAGTACAAGCCCCACCAATGCGAAATATGCAAT
AAATCTTTTCGACAAATGGGCGAATTGCGAGCACACATCCGTCGTCATAC
GGGCGACCGTCCATACAAGTGTATGTACTGCGACCGCCACTTCTACGATC
GCAGCGAACGGGTCCGCCATGAACGGGTCCACACCAACACGCGTCCTTAT
GCCTGCCAGGAGTGCGGGAAAACTTTTACGCACACAGCCATCCTCAAAAA
TCACATCCTTTCGCACTCCGCCCAAAAGAATTACAACTGTGGTATCTGTT
GCAAGTCATTCACTCTGCTGCACCAGCTGAAAGCTCACCTGCAAACGCTA
ACCCACCGCAACAAAATGGAGCAAACCATTCCCAGCTCTCCGGAAATGTT
AGAGAGCGCAAGCTTTCTAGACCAT
BO02547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14710-RB | 1248 | CG14710-PB | 1..1245 | 113..1357 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14710-RB | 1458 | CG14710-RB | 25..1365 | 17..1357 | 6705 | 100 | Plus |
| CG6808-RB | 1447 | CG6808-RB | 1278..1398 | 1357..1237 | 605 | 100 | Minus |
| CG6808-RA | 3138 | CG6808-RA | 2969..3089 | 1357..1237 | 605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11620402..11621145 | 247..990 | 3720 | 100 | Plus |
| 3R | 32079331 | 3R | 11621208..11621453 | 991..1236 | 1230 | 100 | Plus |
| 3R | 32079331 | 3R | 11620114..11620346 | 17..249 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 11621515..11621635 | 1237..1357 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:02 has no hits.
BO02547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:02 Download gff for
BO02547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 1..1248 | 113..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:37 Download gff for
BO02547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 14..1366 | 8..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:34 Download gff for
BO02547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 25..1365 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:02 Download gff for
BO02547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 14..1366 | 8..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:50 Download gff for
BO02547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14710-RB | 25..1365 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:50 Download gff for
BO02547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11620114..11620344 | 17..247 | 100 | -> | Plus |
| 3R | 11620403..11621145 | 248..990 | 100 | -> | Plus |
| 3R | 11621208..11621453 | 991..1236 | 100 | -> | Plus |
| 3R | 11621515..11621635 | 1237..1359 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:34 Download gff for
BO02547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7445836..7446066 | 17..247 | 100 | -> | Plus |
| arm_3R | 7446125..7446867 | 248..990 | 100 | -> | Plus |
| arm_3R | 7446930..7447175 | 991..1236 | 100 | -> | Plus |
| arm_3R | 7447237..7447357 | 1237..1359 | 98 | | Plus |
BO02547.pep Sequence
Translation from 16 to 1375
> BO02547.pep
MRSHSAGLKLFKTHLIEISLNFQPPCKKTLARMASLPVILQCRICLGDFE
ESQMICLFGDKGESDLRKKLELCCRIRVRQSPQLPEKACNSCCEFVQMWF
NFRQMCLNSQVYWETSSSERPEALAQASDAEYMLYLYENLHLKLGTENQE
KEEITAIEEGDEQQEDQSQEVLDFNGFIINESIEEDEEPNTESPEQILIS
HMDSYVDDQQMEELIDDKGELVEELSNANTFYEVEYGDEELLMSSAPSPH
PSFKMDKQKPGRPRKPDAELKFKRKDINAKERGNQPKCKEEEKFMCILCG
NVFYKKSVFTAHMMTHSEYKPHQCEICNKSFRQMGELRAHIRRHTGDRPY
KCMYCDRHFYDRSERVRHERVHTNTRPYACQECGKTFTHTAILKNHILSH
SAQKNYNCGICCKSFTLLHQLKAHLQTLTHRNKMEQTIPSSPEMLESASF
LDH
BO02547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14710-PB | 415 | CG14710-PB | 1..415 | 33..447 | 2245 | 100 | Plus |
| trem-PA | 439 | CG4413-PA | 12..434 | 42..452 | 486 | 27.9 | Plus |
| CG14711-PA | 377 | CG14711-PA | 1..363 | 36..431 | 471 | 29.3 | Plus |
| CG4854-PA | 319 | CG4854-PA | 10..308 | 40..424 | 418 | 27.5 | Plus |
| CG4424-PA | 345 | CG4424-PA | 188..325 | 295..432 | 414 | 49.3 | Plus |
| CG4854-PA | 319 | CG4854-PA | 180..285 | 324..429 | 193 | 31.1 | Plus |
